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Carg09437 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg09437
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-type E3 ubiquitin transferase
Genome locationCarg_Chr17:6089343..6089831
RNA-Seq ExpressionCarg09437
SyntenyCarg09437
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR044675 - E3 ubiquitin-protein ligase RING1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF41012.1 conserved hypothetical protein [Ricinus communis]9.6e-1940.48Show/hide
Query:  ICSGIAIICSLIISLTFFHLTILGWFNCCCHSPRTTESVENIKNEVSHI------MQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHV
        I  G+ +  ++ I+   + + +LGW     H   + + + N  +  S +          T  YKK  EN E  +E+EC++CLS FED E +RQLP C H 
Subjt:  ICSGIAIICSLIISLTFFHLTILGWFNCCCHSPRTTESVENIKNEVSHI------MQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHV

Query:  FHASCIDVWLSSHSECPLCRTPVHHV
        FHASCID+W+ SHS+CPLCRTP+H +
Subjt:  FHASCIDVWLSSHSECPLCRTPVHHV

KAA0059407.1 E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa]8.9e-4964.07Show/hide
Query:  MSVFFICSGIAIICSLIISLTFFHLTILGWFNCCCHSPRTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVF
        MSV FICSG+AI+CSL I+L FF+L +LGWFNCCC SP  T+ V+NIK E S++++I T+ YKKEN++EETN  SEC LCLSP EDGECIR+L +CNHVF
Subjt:  MSVFFICSGIAIICSLIISLTFFHLTILGWFNCCCHSPRTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVF

Query:  HASCIDVWLSSHSECPLCRTPVHHVACRTAE----AVICQVVDI-NSLQIELSPHVIRSKAWPENMV
        HASCIDVWL SHS CPLCRT + HVAC   E     V   VV I NSLQI LS H  R  +  ENMV
Subjt:  HASCIDVWLSSHSECPLCRTPVHHVACRTAE----AVICQVVDI-NSLQIELSPHVIRSKAWPENMV

KAE8646506.1 hypothetical protein Csa_015876 [Cucumis sativus]2.5e-5167.68Show/hide
Query:  MSVFFICSGIAIICSLIISLTFFHLT-ILGWFNCCCHSPRTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHV
        MSV FICSGIAIICSL I+L FF+LT ILGWFNCCC SP  T +V+NIK E S++M+I T+ YKKEN++EETN  SEC LCLSP+EDGECIR+L +CNHV
Subjt:  MSVFFICSGIAIICSLIISLTFFHLT-ILGWFNCCCHSPRTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHV

Query:  FHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVICQVVDI-NSLQIELSPHVIRSKAWPENMV
        FHASCID+WL SHS CPLCRTP+  VAC   E     VV I NSLQIE S H  + +A PENMV
Subjt:  FHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVICQVVDI-NSLQIELSPHVIRSKAWPENMV

KAG7013994.1 E3 ubiquitin-protein ligase ATL6, partial [Cucurbita argyrosperma subsp. argyrosperma]3.0e-89100Show/hide
Query:  MSVFFICSGIAIICSLIISLTFFHLTILGWFNCCCHSPRTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVF
        MSVFFICSGIAIICSLIISLTFFHLTILGWFNCCCHSPRTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVF
Subjt:  MSVFFICSGIAIICSLIISLTFFHLTILGWFNCCCHSPRTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVF

Query:  HASCIDVWLSSHSECPLCRTPVHHVACRTAEAVICQVVDINSLQIELSPHVIRSKAWPENMV
        HASCIDVWLSSHSECPLCRTPVHHVACRTAEAVICQVVDINSLQIELSPHVIRSKAWPENMV
Subjt:  HASCIDVWLSSHSECPLCRTPVHHVACRTAEAVICQVVDINSLQIELSPHVIRSKAWPENMV

XP_020219623.1 E3 ubiquitin-protein ligase RING1-like [Cajanus cajan]3.6e-1843.22Show/hide
Query:  GIAIICSLIISLTFFHLTILGWFNCCCHSPRTTESVENIKNEVSHIMQIPTVTYKKENENEETN-TESECVLCLSPFEDGECIRQLPSCNHVFHASCIDV
        GI II +L+IS TFF LT+LGW     H P    +  +  ++ S  M + + +   + +  E N  ++ECV+CL+PFE+ + +R+L +C H+FH SCID 
Subjt:  GIAIICSLIISLTFFHLTILGWFNCCCHSPRTTESVENIKNEVSHIMQIPTVTYKKENENEETN-TESECVLCLSPFEDGECIRQLPSCNHVFHASCIDV

Query:  WLSSHSECPLCRTPVHHV
        WL SHS CPLCRT +  V
Subjt:  WLSSHSECPLCRTPVHHV

TrEMBL top hitse value%identityAlignment
A0A0A0KAX6 RING-type E3 ubiquitin transferase1.2e-5167.68Show/hide
Query:  MSVFFICSGIAIICSLIISLTFFHLT-ILGWFNCCCHSPRTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHV
        MSV FICSGIAIICSL I+L FF+LT ILGWFNCCC SP  T +V+NIK E S++M+I T+ YKKEN++EETN  SEC LCLSP+EDGECIR+L +CNHV
Subjt:  MSVFFICSGIAIICSLIISLTFFHLT-ILGWFNCCCHSPRTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHV

Query:  FHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVICQVVDI-NSLQIELSPHVIRSKAWPENMV
        FHASCID+WL SHS CPLCRTP+  VAC   E     VV I NSLQIE S H  + +A PENMV
Subjt:  FHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVICQVVDI-NSLQIELSPHVIRSKAWPENMV

A0A2N9J1M7 RING-type E3 ubiquitin transferase7.2e-2043.75Show/hide
Query:  VFFICSGIAIICSLIISLTFFHLT--ILGWFNCCCHSPRTTESVENIKNEVSHI--MQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNH
        ++ I  GI +I S+II+L F++L   +L  +    H P T   V+    + S +  + + T  YKK  EN E  +E+ECV+CLS FED EC+ +LP C H
Subjt:  VFFICSGIAIICSLIISLTFFHLT--ILGWFNCCCHSPRTTESVENIKNEVSHI--MQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNH

Query:  VFHASCIDVWLSSHSECPLCRTPVHHVA
         FH  CID+WL SHS+CPLCRTP+  ++
Subjt:  VFHASCIDVWLSSHSECPLCRTPVHHVA

A0A2Z6MV30 RING-type E3 ubiquitin transferase3.0e-1840Show/hide
Query:  FICSGIAIICSLIISLTFFHLTILGWFNCCCHSPRTTESVENIKNEVSHIMQIP----TVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVF
        ++  GI II S++I+  FF LT+ GW N   H P    ++ +   + S  M +     T  YK+ +  ++   ++ECV+CL+ F++ E +R+L SC HVF
Subjt:  FICSGIAIICSLIISLTFFHLTILGWFNCCCHSPRTTESVENIKNEVSHIMQIP----TVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVF

Query:  HASCIDVWLSSHSECPLCRTPVHHV
        H SCID WL SHS CPLCR+ +  V
Subjt:  HASCIDVWLSSHSECPLCRTPVHHV

A0A5D3BXP3 RING-type E3 ubiquitin transferase4.3e-4964.07Show/hide
Query:  MSVFFICSGIAIICSLIISLTFFHLTILGWFNCCCHSPRTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVF
        MSV FICSG+AI+CSL I+L FF+L +LGWFNCCC SP  T+ V+NIK E S++++I T+ YKKEN++EETN  SEC LCLSP EDGECIR+L +CNHVF
Subjt:  MSVFFICSGIAIICSLIISLTFFHLTILGWFNCCCHSPRTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVF

Query:  HASCIDVWLSSHSECPLCRTPVHHVACRTAE----AVICQVVDI-NSLQIELSPHVIRSKAWPENMV
        HASCIDVWL SHS CPLCRT + HVAC   E     V   VV I NSLQI LS H  R  +  ENMV
Subjt:  HASCIDVWLSSHSECPLCRTPVHHVACRTAE----AVICQVVDI-NSLQIELSPHVIRSKAWPENMV

B9S5S5 RING-type E3 ubiquitin transferase4.6e-1940.48Show/hide
Query:  ICSGIAIICSLIISLTFFHLTILGWFNCCCHSPRTTESVENIKNEVSHI------MQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHV
        I  G+ +  ++ I+   + + +LGW     H   + + + N  +  S +          T  YKK  EN E  +E+EC++CLS FED E +RQLP C H 
Subjt:  ICSGIAIICSLIISLTFFHLTILGWFNCCCHSPRTTESVENIKNEVSHI------MQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHV

Query:  FHASCIDVWLSSHSECPLCRTPVHHV
        FHASCID+W+ SHS+CPLCRTP+H +
Subjt:  FHASCIDVWLSSHSECPLCRTPVHHV

SwissProt top hitse value%identityAlignment
P93823 RING-H2 finger protein ATL13.7e-1337.86Show/hide
Query:  SHIMQIPTVTYKKEN----ENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVICQVVDINSLQIEL
        S I  IP   +KK +    E +++    EC +CL+ F++ E +R +P+C HVFH  CID+WL  ++ CPLCRT V   A  T +     ++   S   E 
Subjt:  SHIMQIPTVTYKKEN----ENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVICQVVDINSLQIEL

Query:  SPH
        SPH
Subjt:  SPH

Q9LSW9 RING-H2 finger protein ATL161.6e-1343.33Show/hide
Query:  SHIMQIPTVTYKK-----------ENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTA
        S I  IP   +KK           E E EE     EC +CLS F+D E +R +P+C+H+FH  CIDVWL +++ CPLCRT    V+C T+
Subjt:  SHIMQIPTVTYKK-----------ENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTA

Q9LUZ9 RING-H2 finger protein ATL634.6e-1648.42Show/hide
Query:  LGWFNCCCHSPRTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPV
        LG F+    SP  T + ++   + S I  IP   Y +ENE EE + E ECV+CL  +E G+  R+L +C H FH  CID+WLSSHS CPLCR+PV
Subjt:  LGWFNCCCHSPRTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPV

Q9M0R5 Putative RING-H2 finger protein ATL365.6e-1439.81Show/hide
Query:  LGWFNCCCHSPRTTESVENIKNEVSH-----------IMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECP
        LG  +CC H     E +     +V H           I   PT  Y +    +      EC +CLS FED E +R +P C+H FHA+CIDVWLSS S CP
Subjt:  LGWFNCCCHSPRTTESVENIKNEVSH-----------IMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECP

Query:  LCR
        +CR
Subjt:  LCR

Q9SRQ8 RING-H2 finger protein ATL512.1e-1342.7Show/hide
Query:  IPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVICQVVDINSLQI
        I ++T  K  + +     S+C +CLS F++ E +R LP CNH FH  CID WL SHS CPLCR  +      T+ AV  ++VD+ + QI
Subjt:  IPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVICQVVDINSLQI

Arabidopsis top hitse value%identityAlignment
AT1G04360.1 RING/U-box superfamily protein2.6e-1437.86Show/hide
Query:  SHIMQIPTVTYKKEN----ENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVICQVVDINSLQIEL
        S I  IP   +KK +    E +++    EC +CL+ F++ E +R +P+C HVFH  CID+WL  ++ CPLCRT V   A  T +     ++   S   E 
Subjt:  SHIMQIPTVTYKKEN----ENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVICQVVDINSLQIEL

Query:  SPH
        SPH
Subjt:  SPH

AT3G03550.1 RING/U-box superfamily protein1.5e-1442.7Show/hide
Query:  IPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVICQVVDINSLQI
        I ++T  K  + +     S+C +CLS F++ E +R LP CNH FH  CID WL SHS CPLCR  +      T+ AV  ++VD+ + QI
Subjt:  IPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVICQVVDINSLQI

AT4G09120.1 RING/U-box superfamily protein4.0e-1539.81Show/hide
Query:  LGWFNCCCHSPRTTESVENIKNEVSH-----------IMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECP
        LG  +CC H     E +     +V H           I   PT  Y +    +      EC +CLS FED E +R +P C+H FHA+CIDVWLSS S CP
Subjt:  LGWFNCCCHSPRTTESVENIKNEVSH-----------IMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECP

Query:  LCR
        +CR
Subjt:  LCR

AT5G43420.1 RING/U-box superfamily protein1.2e-1443.33Show/hide
Query:  SHIMQIPTVTYKK-----------ENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTA
        S I  IP   +KK           E E EE     EC +CLS F+D E +R +P+C+H+FH  CIDVWL +++ CPLCRT    V+C T+
Subjt:  SHIMQIPTVTYKK-----------ENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTA

AT5G58580.1 TOXICOS EN LEVADURA 633.3e-1748.42Show/hide
Query:  LGWFNCCCHSPRTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPV
        LG F+    SP  T + ++   + S I  IP   Y +ENE EE + E ECV+CL  +E G+  R+L +C H FH  CID+WLSSHS CPLCR+PV
Subjt:  LGWFNCCCHSPRTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGTCTTCTTCATTTGCTCCGGCATTGCCATTATTTGCTCACTGATTATATCCCTCACATTCTTCCATCTCACAATACTAGGATGGTTCAATTGCTGCTGCCATTC
ACCCAGGACGACCGAGTCAGTTGAGAATATTAAGAATGAAGTATCACATATCATGCAGATCCCAACTGTCACGTACAAGAAAGAAAATGAGAATGAAGAAACTAATACTG
AAAGTGAGTGTGTTTTGTGCTTGTCACCTTTTGAAGATGGGGAATGCATACGGCAGCTTCCCAGCTGCAACCATGTCTTTCATGCTTCGTGCATCGACGTATGGCTCTCT
TCACATTCAGAGTGCCCACTCTGTCGGACTCCAGTCCACCATGTAGCTTGTCGGACTGCAGAGGCGGTGATTTGTCAGGTAGTAGACATTAACAGTCTCCAGATTGAGCT
TTCTCCTCATGTAATTAGGAGCAAGGCGTGGCCAGAAAACATGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCGTCTTCTTCATTTGCTCCGGCATTGCCATTATTTGCTCACTGATTATATCCCTCACATTCTTCCATCTCACAATACTAGGATGGTTCAATTGCTGCTGCCATTC
ACCCAGGACGACCGAGTCAGTTGAGAATATTAAGAATGAAGTATCACATATCATGCAGATCCCAACTGTCACGTACAAGAAAGAAAATGAGAATGAAGAAACTAATACTG
AAAGTGAGTGTGTTTTGTGCTTGTCACCTTTTGAAGATGGGGAATGCATACGGCAGCTTCCCAGCTGCAACCATGTCTTTCATGCTTCGTGCATCGACGTATGGCTCTCT
TCACATTCAGAGTGCCCACTCTGTCGGACTCCAGTCCACCATGTAGCTTGTCGGACTGCAGAGGCGGTGATTTGTCAGGTAGTAGACATTAACAGTCTCCAGATTGAGCT
TTCTCCTCATGTAATTAGGAGCAAGGCGTGGCCAGAAAACATGGTTTAA
Protein sequenceShow/hide protein sequence
MSVFFICSGIAIICSLIISLTFFHLTILGWFNCCCHSPRTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLS
SHSECPLCRTPVHHVACRTAEAVICQVVDINSLQIELSPHVIRSKAWPENMV