; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg09518 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg09518
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description30S ribosomal protein S17, chloroplastic-like
Genome locationCarg_Chr17:6628444..6628923
RNA-Seq ExpressionCarg09518
SyntenyCarg09518
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019979 - Ribosomal protein S17, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575529.1 Cytochrome c-type biogenesis CcmH-like mitochondrial protein, partial [Cucurbita argyrosperma subsp. sororia]4.7e-79100Show/hide
Query:  MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQA
        MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQA
Subjt:  MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQA

Query:  HDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQ
        HDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQ
Subjt:  HDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQ

XP_022953774.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita moschata]1.6e-79100Show/hide
Query:  MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQA
        MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQA
Subjt:  MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQA

Query:  HDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV
        HDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV
Subjt:  HDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV

XP_022992420.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita maxima]7.1e-7594.94Show/hide
Query:  SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
        + LS SSFLQIPPLQRLKNLS+STSFLHGSVPLSFLSKPSPSLSASQTPNFLPSI+AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
Subjt:  SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH

Query:  DPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV
        DPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAG GEL IPLESQ+QV
Subjt:  DPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV

XP_023513636.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo]3.5e-6686.08Show/hide
Query:  SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
        + L+PSS LQIPPLQR K LS+STSFLHGS PLSFLSKP+P  S  QT NFLPSI+AM+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
Subjt:  SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH

Query:  DPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV
        DPDN+FKVGDFVELEKCRPISKMKTFLAIPVPARNSK K AEA AG+LGIPLESQ+QV
Subjt:  DPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV

XP_023548191.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo]1.2e-7797.47Show/hide
Query:  SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
        + LSPSSFLQIPPLQRLKNLS+STSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
Subjt:  SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH

Query:  DPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV
        DPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQ+QV
Subjt:  DPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV

TrEMBL top hitse value%identityAlignment
A0A1S3CGC8 30S ribosomal protein S17, chloroplastic3.2e-6586.25Show/hide
Query:  SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKP--SPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ
        + L+ SS LQIPPLQ LK LSIS+SFLHGS PLSFLSKP  SPS  ASQTPNFLPSI+AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ
Subjt:  SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKP--SPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ

Query:  AHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAG-AGELGIPLESQEQ
        AHDPDN+FKVGDFVELEKCRPISKMKTFLAIPVPAR SK KAAE G  GELGIPLESQ++
Subjt:  AHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAG-AGELGIPLESQEQ

A0A6J1GQP3 30S ribosomal protein S17, chloroplastic-like7.9e-80100Show/hide
Query:  MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQA
        MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQA
Subjt:  MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQA

Query:  HDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV
        HDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV
Subjt:  HDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV

A0A6J1HJK0 30S ribosomal protein S17, chloroplastic1.7e-6686.08Show/hide
Query:  SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
        + L+PSS LQIPPLQR K LS+STSFLHGS PLSFLSKP+P  S  QT NFLPSI+AM+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
Subjt:  SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH

Query:  DPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV
        DPDN+FKVGDFVELEKCRPISKMKTFLAIPVPARNSK K AEA AG+LGIPLESQ+QV
Subjt:  DPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV

A0A6J1JVM9 30S ribosomal protein S17, chloroplastic-like3.4e-7594.94Show/hide
Query:  SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
        + LS SSFLQIPPLQRLKNLS+STSFLHGSVPLSFLSKPSPSLSASQTPNFLPSI+AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
Subjt:  SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH

Query:  DPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV
        DPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAG GEL IPLESQ+QV
Subjt:  DPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV

A0A6J1KMI9 30S ribosomal protein S17, chloroplastic1.7e-6686.08Show/hide
Query:  SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
        + L+PSS LQIPPLQR K LS+STSFLHGS PLSFLSKP+P  S  QT NFLPSI+AM+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
Subjt:  SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH

Query:  DPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV
        DPDN+FKVGDFVELEKCRPISKMKTFLAIPVPARNSK K AEA AG+LGIPLESQ+QV
Subjt:  DPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV

SwissProt top hitse value%identityAlignment
P16180 30S ribosomal protein S17, chloroplastic6.3e-4265.96Show/hide
Query:  LKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEK
        L+ L +S+ F HGS PLS LSKP+ S    + P  +P I+AM+++QGRVVCAT+DKTVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDN+FKVGD V LEK
Subjt:  LKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEK

Query:  CRPISKMKTFLAIPVPARNSKPKAAEAGAGE-LGIPLESQE
         RPISK K+F+A+PV AR +  + AEAG  E LG+PLESQ+
Subjt:  CRPISKMKTFLAIPVPARNSKPKAAEAGAGE-LGIPLESQE

P17092 30S ribosomal protein S17, chloroplastic (Fragment)6.3e-3456.72Show/hide
Query:  FLHGSVPLSFLSKP--SPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKM
        F    + L+  S P  SP           P+IKAM++++G+VVCA+ +KTVAVEV RLAPHPKY++RIR+KKKYQAHDP+N FKVGD V+L K RPISK 
Subjt:  FLHGSVPLSFLSKP--SPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKM

Query:  KTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQ
        KTFLA+P P+R SK   +   +GELGIPL+SQ++
Subjt:  KTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQ

P82137 30S ribosomal protein S17, chloroplastic2.5e-3859.51Show/hide
Query:  LSPSSFLQIPPLQRLKNLSISTSFLHGSV-------PLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKK
        +S S  L  PPL    + S    FLHG+          S LS  S   S+S T  F P IKAMRS+QG+V+CATNDKTV VEVVRLAPHPKYKRR+R KK
Subjt:  LSPSSFLQIPPLQRLKNLSISTSFLHGSV-------PLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKK

Query:  KYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNS---KPKAAEAGAGELGIPLESQ
        KYQAHDPDN+FKVGD+V+L+KCRPISK KTFLA+    R S   +PK  +A + ELGIPLESQ
Subjt:  KYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNS---KPKAAEAGAGELGIPLESQ

Q9TJN6 30S ribosomal protein S17, chloroplastic8.8e-2858.27Show/hide
Query:  SVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAI
        S P   +S P P LS+      L  I+A R L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDN+FKVGD VEL+  RPISK K FLAI
Subjt:  SVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAI

Query:  PVPARNSKPKAAEAGAGELGIPLESQE
        P+P R+++ K+      +L  PL+S +
Subjt:  PVPARNSKPKAAEAGAGELGIPLESQE

Q9ZST1 30S ribosomal protein S17, chloroplastic1.5e-2764.08Show/hide
Query:  IKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLES
        I+A + L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDN+FKVGD VEL + RPISK K FLA+P+P R+++ K+      +L  PL+S
Subjt:  IKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLES

Query:  QEQ
        Q Q
Subjt:  QEQ

Arabidopsis top hitse value%identityAlignment
AT1G79850.1 ribosomal protein S174.5e-4365.96Show/hide
Query:  LKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEK
        L+ L +S+ F HGS PLS LSKP+ S    + P  +P I+AM+++QGRVVCAT+DKTVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDN+FKVGD V LEK
Subjt:  LKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEK

Query:  CRPISKMKTFLAIPVPARNSKPKAAEAGAGE-LGIPLESQE
         RPISK K+F+A+PV AR +  + AEAG  E LG+PLESQ+
Subjt:  CRPISKMKTFLAIPVPARNSKPKAAEAGAGE-LGIPLESQE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCTCTGAGTCCCTCATCCTTTCTGCAAATTCCTCCATTACAGAGGCTGAAGAACCTCTCAATTTCCACTTCCTTCCTCCATGGCTCAGTTCCTCTGTCATTTCT
CTCTAAGCCTTCGCCCTCGCTATCGGCCTCCCAAACCCCCAATTTCCTCCCCTCGATTAAGGCCATGAGGTCGCTGCAAGGCCGTGTGGTCTGCGCTACCAACGACAAGA
CCGTCGCCGTCGAGGTCGTGCGATTGGCGCCTCATCCGAAATACAAACGGCGCATTAGAATCAAGAAGAAGTACCAGGCGCACGATCCGGATAACAAATTCAAGGTCGGA
GACTTTGTGGAGCTTGAAAAATGCCGGCCGATCAGCAAGATGAAGACGTTCCTGGCCATTCCAGTTCCGGCGAGGAATTCGAAGCCGAAAGCGGCGGAAGCCGGTGCTGG
AGAGCTCGGGATTCCATTGGAGTCGCAGGAACAGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGCTCTGAGTCCCTCATCCTTTCTGCAAATTCCTCCATTACAGAGGCTGAAGAACCTCTCAATTTCCACTTCCTTCCTCCATGGCTCAGTTCCTCTGTCATTTCT
CTCTAAGCCTTCGCCCTCGCTATCGGCCTCCCAAACCCCCAATTTCCTCCCCTCGATTAAGGCCATGAGGTCGCTGCAAGGCCGTGTGGTCTGCGCTACCAACGACAAGA
CCGTCGCCGTCGAGGTCGTGCGATTGGCGCCTCATCCGAAATACAAACGGCGCATTAGAATCAAGAAGAAGTACCAGGCGCACGATCCGGATAACAAATTCAAGGTCGGA
GACTTTGTGGAGCTTGAAAAATGCCGGCCGATCAGCAAGATGAAGACGTTCCTGGCCATTCCAGTTCCGGCGAGGAATTCGAAGCCGAAAGCGGCGGAAGCCGGTGCTGG
AGAGCTCGGGATTCCATTGGAGTCGCAGGAACAGGTTTAA
Protein sequenceShow/hide protein sequence
MSALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVG
DFVELEKCRPISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQV