; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg09572 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg09572
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionzinc finger CCCH domain-containing protein 39-like isoform X1
Genome locationCarg_Chr17:6914431..6916567
RNA-Seq ExpressionCarg09572
SyntenyCarg09572
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000571 - Zinc finger, CCCH-type
IPR036855 - Zinc finger, CCCH-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575584.1 Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma subsp. sororia]5.5e-12186.42Show/hide
Query:  MSVTYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQ
        MSVTYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQ
Subjt:  MSVTYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQ

Query:  RRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVDSGHVMDRRRGLNQLEEVRSKVQTEIVVR-----------------------------------
        RRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVDSGHVMDRRRGLNQLEEVRSKVQTEIVVR                                   
Subjt:  RRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVDSGHVMDRRRGLNQLEEVRSKVQTEIVVR-----------------------------------

Query:  -ELQKLEPFIASQRGSVSDASATTSAATQAEIGTVCKNEEPRMKQFFKSKKSKRLIAIYADWLED
         ELQKLEPFIASQRGSVSDASATTSAATQAEIGTVCKNEEPRMKQFFKSKKSKRLIAIYADWLED
Subjt:  -ELQKLEPFIASQRGSVSDASATTSAATQAEIGTVCKNEEPRMKQFFKSKKSKRLIAIYADWLED

KAG7014125.1 hypothetical protein SDJN02_24298, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-126100Show/hide
Query:  MSVTYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQ
        MSVTYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQ
Subjt:  MSVTYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQ

Query:  RRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVDSGHVMDRRRGLNQLEEVRSKVQTEIVVRELQKLEPFIASQRGSVSDASATTSAATQAEIGTVC
        RRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVDSGHVMDRRRGLNQLEEVRSKVQTEIVVRELQKLEPFIASQRGSVSDASATTSAATQAEIGTVC
Subjt:  RRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVDSGHVMDRRRGLNQLEEVRSKVQTEIVVRELQKLEPFIASQRGSVSDASATTSAATQAEIGTVC

Query:  KNEEPRMKQFFKSKKSKRLIAIYADWLED
        KNEEPRMKQFFKSKKSKRLIAIYADWLED
Subjt:  KNEEPRMKQFFKSKKSKRLIAIYADWLED

XP_022953289.1 zinc finger CCCH domain-containing protein 39-like isoform X1 [Cucurbita moschata]2.3e-9582.46Show/hide
Query:  MPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQRRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVD
        MPSKS IPPSNNRNIGYDHELGCM TPALNDTHRRLPSLRGIGFHEG LSGRSNEMKVCRQFQRRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVD
Subjt:  MPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQRRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVD

Query:  SGHVMDRRRGLNQLEEVRSKVQTEIVVR------------------------------------ELQKLEPFIASQRGSVSDASATTSAATQAEIGTVCK
        SGHVMDRRRGL+QLEEVRSKVQTEIVVR                                    ELQKLEPFIASQRGSVSDASATTSAATQAEIGTVCK
Subjt:  SGHVMDRRRGLNQLEEVRSKVQTEIVVR------------------------------------ELQKLEPFIASQRGSVSDASATTSAATQAEIGTVCK

Query:  NEEPRMKQFFKSKKSKRLIAIYADWLED
        NEEPRMKQFFKSKKSKRLIAIYADWLED
Subjt:  NEEPRMKQFFKSKKSKRLIAIYADWLED

XP_022992022.1 zinc finger CCCH domain-containing protein 39-like isoform X1 [Cucurbita maxima]9.8e-11080.83Show/hide
Query:  MSVTYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQ
        MS TYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKS IPPSNNRNIGYDHELGCM TPALNDTHRRLPSLRGI FHEG LSGRSNEMK CRQFQ
Subjt:  MSVTYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQ

Query:  RRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVDSGHVMDRRRGLNQLEEVRSKVQTEIVVR-----------------------------------
        RRRKCAYGDQCRYLHE PEKTR FGS+TQNYEVRIVDSGHVM+RRRGL+QLEEVRSKVQTEIVVR                                   
Subjt:  RRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVDSGHVMDRRRGLNQLEEVRSKVQTEIVVR-----------------------------------

Query:  -ELQKLEPFI-ASQRGSVSDASATTSAATQAEIGTVCKNEEPRMKQFFKSKKSKRLIAIYADWLED
         ELQKL PFI ASQRGSVSDASATTSAATQ EIG VCKNEEPRMKQFFKSKKSKRLIAIYADWLED
Subjt:  -ELQKLEPFI-ASQRGSVSDASATTSAATQAEIGTVCKNEEPRMKQFFKSKKSKRLIAIYADWLED

XP_023548693.1 zinc finger CCCH domain-containing protein 39-like isoform X1 [Cucurbita pepo subsp. pepo]3.1e-11683.77Show/hide
Query:  MSVTYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQ
        MS TYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKSGIPPSNNRNIGYDHELGCM TPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQ
Subjt:  MSVTYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQ

Query:  RRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVDSGHVMDRRRGLNQLEEVRSKVQTEIVV------------------------------------
        RRRKCAYGDQCRYLHE PEKTRAFGSSTQNYEVRIVDSGHVM+RRRGL+QLEEVRSKVQTEIVV                                    
Subjt:  RRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVDSGHVMDRRRGLNQLEEVRSKVQTEIVV------------------------------------

Query:  RELQKLEPFIASQRGSVSDASATTSAATQAEIGTVCKNEEPRMKQFFKSKKSKRLIAIYADWLED
         ELQKLEPFIASQRGSVSDASATTSAATQAE GTVCKNEEPRMKQFFKSKKSKRLIAIYADWLED
Subjt:  RELQKLEPFIASQRGSVSDASATTSAATQAEIGTVCKNEEPRMKQFFKSKKSKRLIAIYADWLED

TrEMBL top hitse value%identityAlignment
A0A6J1GP84 zinc finger CCCH domain-containing protein 39-like isoform X11.1e-9582.46Show/hide
Query:  MPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQRRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVD
        MPSKS IPPSNNRNIGYDHELGCM TPALNDTHRRLPSLRGIGFHEG LSGRSNEMKVCRQFQRRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVD
Subjt:  MPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQRRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVD

Query:  SGHVMDRRRGLNQLEEVRSKVQTEIVVR------------------------------------ELQKLEPFIASQRGSVSDASATTSAATQAEIGTVCK
        SGHVMDRRRGL+QLEEVRSKVQTEIVVR                                    ELQKLEPFIASQRGSVSDASATTSAATQAEIGTVCK
Subjt:  SGHVMDRRRGLNQLEEVRSKVQTEIVVR------------------------------------ELQKLEPFIASQRGSVSDASATTSAATQAEIGTVCK

Query:  NEEPRMKQFFKSKKSKRLIAIYADWLED
        NEEPRMKQFFKSKKSKRLIAIYADWLED
Subjt:  NEEPRMKQFFKSKKSKRLIAIYADWLED

A0A6J1JNJ8 zinc finger CCCH domain-containing protein 39-like isoform X14.7e-11080.83Show/hide
Query:  MSVTYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQ
        MS TYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKS IPPSNNRNIGYDHELGCM TPALNDTHRRLPSLRGI FHEG LSGRSNEMK CRQFQ
Subjt:  MSVTYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQ

Query:  RRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVDSGHVMDRRRGLNQLEEVRSKVQTEIVVR-----------------------------------
        RRRKCAYGDQCRYLHE PEKTR FGS+TQNYEVRIVDSGHVM+RRRGL+QLEEVRSKVQTEIVVR                                   
Subjt:  RRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVDSGHVMDRRRGLNQLEEVRSKVQTEIVVR-----------------------------------

Query:  -ELQKLEPFI-ASQRGSVSDASATTSAATQAEIGTVCKNEEPRMKQFFKSKKSKRLIAIYADWLED
         ELQKL PFI ASQRGSVSDASATTSAATQ EIG VCKNEEPRMKQFFKSKKSKRLIAIYADWLED
Subjt:  -ELQKLEPFI-ASQRGSVSDASATTSAATQAEIGTVCKNEEPRMKQFFKSKKSKRLIAIYADWLED

A0A6J1JNK4 zinc finger CCCH domain-containing protein 39-like isoform X33.0e-8878.17Show/hide
Query:  MPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQRRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVD
        MPSKS IPPSNNRNIGYDHELGCM TPALNDTHRRLPSLRGI FHEG LSGRSNEMK CRQFQRRRKCAYGDQCRYLHE PEKTR FGS+TQNYEVRIVD
Subjt:  MPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQRRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVD

Query:  SGHVMDRRRGLNQLEEVRSKVQTEIVVR------------------------------------ELQKLEPFI-ASQRGSVSDASATTSAATQAEIGTVC
        SGHVM+RRRGL+QLEEVRSKVQTEIVVR                                    ELQKL PFI ASQRGSVSDASATTSAATQ EIG VC
Subjt:  SGHVMDRRRGLNQLEEVRSKVQTEIVVR------------------------------------ELQKLEPFI-ASQRGSVSDASATTSAATQAEIGTVC

Query:  KNEEPRMKQFFKSKKSKRLIAIYADWLED
        KNEEPRMKQFFKSKKSKRLIAIYADWLED
Subjt:  KNEEPRMKQFFKSKKSKRLIAIYADWLED

A0A6J1JSF5 uncharacterized protein LOC111488499 isoform X21.4e-8293.33Show/hide
Query:  MSVTYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQ
        MS TYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKS IPPSNNRNIGYDHELGCM TPALNDTHRRLPSLRGI FHEG LSGRSNEMK CRQFQ
Subjt:  MSVTYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQ

Query:  RRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVDSGHVMDRRRGLNQLEEVRSKVQTEIVVR
        RRRKCAYGDQCRYLHE PEKTR FGS+TQNYEVRIVDSGHVM+RRRGL+QLEEVRSKVQTEIVVR
Subjt:  RRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVDSGHVMDRRRGLNQLEEVRSKVQTEIVVR

A0A6J1JXX2 uncharacterized protein LOC111488499 isoform X41.4e-8293.33Show/hide
Query:  MSVTYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQ
        MS TYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKS IPPSNNRNIGYDHELGCM TPALNDTHRRLPSLRGI FHEG LSGRSNEMK CRQFQ
Subjt:  MSVTYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQ

Query:  RRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVDSGHVMDRRRGLNQLEEVRSKVQTEIVVR
        RRRKCAYGDQCRYLHE PEKTR FGS+TQNYEVRIVDSGHVM+RRRGL+QLEEVRSKVQTEIVVR
Subjt:  RRRKCAYGDQCRYLHENPEKTRAFGSSTQNYEVRIVDSGHVMDRRRGLNQLEEVRSKVQTEIVVR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGTTACTTATCGTTTTAACGAAATTACTCCTCCGGTCCCAGAGGCCCGTGGCGATTCGTCGGCATTGCCTCCTCCACATTCGGATAGTGGACTCCAACAGCGTAC
GATGCCTTCAAAATCTGGGATTCCACCATCGAACAATCGGAACATTGGGTATGACCATGAGTTGGGGTGTATGTTTACACCTGCTTTGAATGATACTCATAGAAGGTTAC
CTTCCTTGCGAGGAATTGGATTTCATGAAGGTCCATTGTCAGGGCGTTCGAATGAAATGAAAGTATGCAGACAGTTCCAACGCCGGAGGAAATGTGCATATGGGGATCAG
TGTCGTTACCTTCATGAAAATCCTGAGAAAACTAGAGCTTTTGGCTCCTCCACCCAGAATTATGAGGTTAGAATAGTAGATTCTGGTCATGTTATGGATCGAAGACGTGG
GTTGAATCAATTGGAAGAAGTCAGATCAAAAGTACAAACAGAGATTGTTGTCCGCGAACTACAAAAGCTCGAGCCCTTCATTGCATCACAACGTGGGAGCGTATCTGATG
CCTCTGCAACAACTTCTGCCGCTACCCAAGCTGAAATTGGAACCGTCTGTAAGAACGAAGAGCCAAGAATGAAGCAATTCTTTAAATCAAAGAAGTCTAAGAGGTTGATT
GCCATTTACGCGGACTGGCTCGAAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGTTACTTATCGTTTTAACGAAATTACTCCTCCGGTCCCAGAGGCCCGTGGCGATTCGTCGGCATTGCCTCCTCCACATTCGGATAGTGGACTCCAACAGCGTAC
GATGCCTTCAAAATCTGGGATTCCACCATCGAACAATCGGAACATTGGGTATGACCATGAGTTGGGGTGTATGTTTACACCTGCTTTGAATGATACTCATAGAAGGTTAC
CTTCCTTGCGAGGAATTGGATTTCATGAAGGTCCATTGTCAGGGCGTTCGAATGAAATGAAAGTATGCAGACAGTTCCAACGCCGGAGGAAATGTGCATATGGGGATCAG
TGTCGTTACCTTCATGAAAATCCTGAGAAAACTAGAGCTTTTGGCTCCTCCACCCAGAATTATGAGGTTAGAATAGTAGATTCTGGTCATGTTATGGATCGAAGACGTGG
GTTGAATCAATTGGAAGAAGTCAGATCAAAAGTACAAACAGAGATTGTTGTCCGCGAACTACAAAAGCTCGAGCCCTTCATTGCATCACAACGTGGGAGCGTATCTGATG
CCTCTGCAACAACTTCTGCCGCTACCCAAGCTGAAATTGGAACCGTCTGTAAGAACGAAGAGCCAAGAATGAAGCAATTCTTTAAATCAAAGAAGTCTAAGAGGTTGATT
GCCATTTACGCGGACTGGCTCGAAGATTGAGTTACCCACAACAAAGATTTCACCAAATTCCGAGGCTTTTAAATGAAGGAAAACAAAGAATTGTGAGTGTGCCATTCCCA
TGAAACCTTGGGGATTCATCTGCGTTTGGACTTCTTCTTCCATGAAGGGTTGCC
Protein sequenceShow/hide protein sequence
MSVTYRFNEITPPVPEARGDSSALPPPHSDSGLQQRTMPSKSGIPPSNNRNIGYDHELGCMFTPALNDTHRRLPSLRGIGFHEGPLSGRSNEMKVCRQFQRRRKCAYGDQ
CRYLHENPEKTRAFGSSTQNYEVRIVDSGHVMDRRRGLNQLEEVRSKVQTEIVVRELQKLEPFIASQRGSVSDASATTSAATQAEIGTVCKNEEPRMKQFFKSKKSKRLI
AIYADWLED