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Carg09585 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg09585
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionmethyl-CpG-binding domain-containing protein 11-like
Genome locationCarg_Chr17:6965048..6966230
RNA-Seq ExpressionCarg09585
SyntenyCarg09585
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR016177 - DNA-binding domain superfamily
IPR039622 - Methyl-CpG-binding domain-containing protein 10/11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575596.1 Methyl-CpG-binding domain-containing protein 11, partial [Cucurbita argyrosperma subsp. sororia]1.1e-1697.87Show/hide
Query:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQLHHRKSLHGNE
        E YLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQLHHRKSLHGNE
Subjt:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQLHHRKSLHGNE
KAG7014138.1 Methyl-CpG-binding domain-containing protein 11 [Cucurbita argyrosperma subsp. argyrosperma]1.4e-30100Show/hide
Query:  MIKEDLQSPVEGAKHEVPFSSLEEMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQLHHRKSLHGNE
        MIKEDLQSPVEGAKHEVPFSSLEEMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQLHHRKSLHGNE
Subjt:  MIKEDLQSPVEGAKHEVPFSSLEEMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQLHHRKSLHGNE
XP_023004316.1 methyl-CpG-binding domain-containing protein 11-like isoform X1 [Cucurbita maxima]2.8e-0788.57Show/hide
Query:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
        E YLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Subjt:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
XP_023004320.1 methyl-CpG-binding domain-containing protein 11-like isoform X5 [Cucurbita maxima]2.8e-0788.57Show/hide
Query:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
        E YLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Subjt:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
XP_023514327.1 methyl-CpG-binding domain-containing protein 11-like isoform X1 [Cucurbita pepo subsp. pepo]2.8e-0788.57Show/hide
Query:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
        E YLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Subjt:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
TrEMBL top hitse value%identityAlignment
A0A6J1KQ36 methyl-CpG-binding domain-containing protein 11-like isoform X21.3e-0788.57Show/hide
Query:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
        E YLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Subjt:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
A0A6J1KRS8 methyl-CpG-binding domain-containing protein 11-like isoform X11.3e-0788.57Show/hide
Query:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
        E YLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Subjt:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
A0A6J1KU91 methyl-CpG-binding domain-containing protein 11-like isoform X51.3e-0788.57Show/hide
Query:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
        E YLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Subjt:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
A0A6J1KVX9 methyl-CpG-binding domain-containing protein 11-like isoform X41.3e-0788.57Show/hide
Query:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
        E YLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Subjt:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
A0A6J1KZ45 methyl-CpG-binding domain-containing protein 11-like isoform X31.3e-0788.57Show/hide
Query:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
        E YLKSHS DVA+SDFDWSTG TPRRSARISEKAK
Subjt:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
SwissProt top hitse value%identityAlignment
Q9LW00 Methyl-CpG-binding domain-containing protein 114.2e-0665.71Show/hide
Query:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
        E YLKSH  + A+++FDW+T  TPRRSARISEK K
Subjt:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
Q9XI36 Methyl-CpG-binding domain-containing protein 102.7e-0557.14Show/hide
Query:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
        E YLK+H  +  +S+F+W+TG TPRRS+RIS+K K
Subjt:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
Arabidopsis top hitse value%identityAlignment
AT1G15340.1 methyl-CPG-binding domain 101.9e-0657.14Show/hide
Query:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
        E YLK+H  +  +S+F+W+TG TPRRS+RIS+K K
Subjt:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
AT3G15790.1 methyl-CPG-binding domain 113.0e-0765.71Show/hide
Query:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK
        E YLKSH  + A+++FDW+T  TPRRSARISEK K
Subjt:  EMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTAAGGAAGATCTTCAAAGCCCAGTTGAAGGAGCTAAACATGAAGTACCTTTTTCAAGCTTGGAAGAAATGTACTTGAAATCGCATTCCGAAGACGTTGCAGTATC
GGATTTTGATTGGAGTACTGGTGTAACACCCAGGAGATCTGCTAGGATTAGTGAGAAGGCAAAGCAACTCCACCACAGGAAGAGCCTCCATGGAAACGAGTGA
mRNA sequenceShow/hide mRNA sequence
AGTTGTGGATGGATGATTATTTGACGATCGAAGGCGTTTACAAAGCGTACTGAAGACGAACGATTTCTTCGAGCGAGTGAAAGAAAGATGATTAAGGAAGATCTTCAAAG
CCCAGTTGAAGGAGCTAAACATGAAGTACCTTTTTCAAGCTTGGAAGAAATGTACTTGAAATCGCATTCCGAAGACGTTGCAGTATCGGATTTTGATTGGAGTACTGGTG
TAACACCCAGGAGATCTGCTAGGATTAGTGAGAAGGCAAAGCAACTCCACCACAGGAAGAGCCTCCATGGAAACGAGTGA
Protein sequenceShow/hide protein sequence
MIKEDLQSPVEGAKHEVPFSSLEEMYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQLHHRKSLHGNE