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Carg09637 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg09637
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionShikimate kinase
Genome locationCarg_Chr14:3744120..3747235
RNA-Seq ExpressionCarg09637
SyntenyCarg09637
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060353.1 putative inactive shikimate kinase like 1 [Cucumis melo var. makuwa]2.2e-2039.13Show/hide
Query:  TDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRI---FAYHFCI----------LLLFGAA--------------DICQRIALFQTELHSVEILL
        TDLQFNIH PK EAMALNSS  LSLPSS+RRNH +PL I   F     I          L+  G +              ++ ++      EL    I L
Subjt:  TDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRI---FAYHFCI----------LLLFGAA--------------DICQRIALFQTELHSVEILL

Query:  ----------LRQGLIEVL--FFLASGIVLLPVANSEFSC--HKQMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLR-----ALLRHSITLWIYLPLQM
                  L + L +VL  ++  S  +++  +  E +   +KQ         E  V++ L +    V+    G ++     ALLRH ITLWI LPLQM
Subjt:  ----------LRQGLIEVL--FFLASGIVLLPVANSEFSC--HKQMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLR-----ALLRHSITLWIYLPLQM

Query:  IAEEFAEDQSQLP------------VLGQITSQNQKLQDGYATADAPISLQSM
        IAEEFAED+SQ P            VLGQITS  QK++DGYATADA ISLQ +
Subjt:  IAEEFAEDQSQLP------------VLGQITSQNQKLQDGYATADAPISLQSM

KAG6581120.1 hypothetical protein SDJN03_21122, partial [Cucurbita argyrosperma subsp. sororia]1.7e-5765.87Show/hide
Query:  MIPSLNQPTDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRIFAYHFCILLLFGAADICQRIALFQTELHSVEILLLRQGLIEVLFFLASGIVLL
        MIPSLNQPTDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRIFAYHFCILLLFGAADICQRIALFQTELHS                        
Subjt:  MIPSLNQPTDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRIFAYHFCILLLFGAADICQRIALFQTELHSVEILLLRQGLIEVLFFLASGIVLL

Query:  PVANSEFSCHK----QMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLRALLRHSITL-WIYLPLQMIAEEFAEDQSQLPVLGQITSQNQKLQDGYATAD
           +S+F+ H+      H VNVYLWELVVVRLLPNFRNEVMKM     R LL+      ++  P     E          VLGQITSQNQKLQDGYATAD
Subjt:  PVANSEFSCHK----QMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLRALLRHSITL-WIYLPLQMIAEEFAEDQSQLPVLGQITSQNQKLQDGYATAD

Query:  APISLQSM
        APISLQSM
Subjt:  APISLQSM

KAG7017853.1 hypothetical protein SDJN02_19719 [Cucurbita argyrosperma subsp. argyrosperma]4.0e-107100Show/hide
Query:  MIPSLNQPTDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRIFAYHFCILLLFGAADICQRIALFQTELHSVEILLLRQGLIEVLFFLASGIVLL
        MIPSLNQPTDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRIFAYHFCILLLFGAADICQRIALFQTELHSVEILLLRQGLIEVLFFLASGIVLL
Subjt:  MIPSLNQPTDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRIFAYHFCILLLFGAADICQRIALFQTELHSVEILLLRQGLIEVLFFLASGIVLL

Query:  PVANSEFSCHKQMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLRALLRHSITLWIYLPLQMIAEEFAEDQSQLPVLGQITSQNQKLQDGYATADAPISL
        PVANSEFSCHKQMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLRALLRHSITLWIYLPLQMIAEEFAEDQSQLPVLGQITSQNQKLQDGYATADAPISL
Subjt:  PVANSEFSCHKQMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLRALLRHSITLWIYLPLQMIAEEFAEDQSQLPVLGQITSQNQKLQDGYATADAPISL

Query:  QSM
        QSM
Subjt:  QSM

XP_008450164.1 PREDICTED: probable inactive shikimate kinase like 1, chloroplastic [Cucumis melo]2.2e-2039.13Show/hide
Query:  TDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRI---FAYHFCI----------LLLFGAA--------------DICQRIALFQTELHSVEILL
        TDLQFNIH PK EAMALNSS  LSLPSS+RRNH +PL I   F     I          L+  G +              ++ ++      EL    I L
Subjt:  TDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRI---FAYHFCI----------LLLFGAA--------------DICQRIALFQTELHSVEILL

Query:  ----------LRQGLIEVL--FFLASGIVLLPVANSEFSC--HKQMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLR-----ALLRHSITLWIYLPLQM
                  L + L +VL  ++  S  +++  +  E +   +KQ         E  V++ L +    V+    G ++     ALLRH ITLWI LPLQM
Subjt:  ----------LRQGLIEVL--FFLASGIVLLPVANSEFSC--HKQMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLR-----ALLRHSITLWIYLPLQM

Query:  IAEEFAEDQSQLP------------VLGQITSQNQKLQDGYATADAPISLQSM
        IAEEFAED+SQ P            VLGQITS  QK++DGYATADA ISLQ +
Subjt:  IAEEFAEDQSQLP------------VLGQITSQNQKLQDGYATADAPISLQSM

XP_023528923.1 uncharacterized protein LOC111791696 [Cucurbita pepo subsp. pepo]1.7e-2847.32Show/hide
Query:  TDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRIFAYHFCILLLFGAADICQRIALFQTELHSVEILLLRQGLIEVLFFLASGIVLLPVANSEFS
        TDLQFNIHF KVEAMALNSSCFLSLPS VRRNHRVPLRI     C+ LL  +A                                               
Subjt:  TDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRIFAYHFCILLLFGAADICQRIALFQTELHSVEILLLRQGLIEVLFFLASGIVLLPVANSEFS

Query:  CHKQMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLRALLRHSITLWIYLPLQMIAEEFAEDQSQLP------------VLGQITSQNQKLQDGYATADA
                         +R   + RN         L ALLRHSIT WIYLPLQMIAEEFA D+SQLP            VLGQITSQNQKL+DGYATADA
Subjt:  CHKQMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLRALLRHSITLWIYLPLQMIAEEFAEDQSQLP------------VLGQITSQNQKLQDGYATADA

Query:  PISLQ
        PISLQ
Subjt:  PISLQ

TrEMBL top hitse value%identityAlignment
A0A0A0LDF4 Uncharacterized protein5.3e-2038.74Show/hide
Query:  TDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRI---FAYHFCI----------LLLFGAA--------------DICQRIALFQTELHSVEILL
        TDLQFN H PK EA+ALNSS  LSLPSS+RRN+ +PL I   F     I          L   G A              ++ ++      EL    I L
Subjt:  TDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRI---FAYHFCI----------LLLFGAA--------------DICQRIALFQTELHSVEILL

Query:  ----------LRQGLIEVL--FFLASGIVLLPVANSEFSC--HKQMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLR-----ALLRHSITLWIYLPLQM
                  L + L +VL  ++  S  +++ V+  E +   +KQ        +E  V++ L +    V+    G ++     ALLRH ITLWI LPLQM
Subjt:  ----------LRQGLIEVL--FFLASGIVLLPVANSEFSC--HKQMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLR-----ALLRHSITLWIYLPLQM

Query:  IAEEFAEDQSQLP------------VLGQITSQNQKLQDGYATADAPISLQSM
        IAEEFAED+SQ P            VLGQITS  QK++DGYATADA ISLQ +
Subjt:  IAEEFAEDQSQLP------------VLGQITSQNQKLQDGYATADAPISLQSM

A0A1S3BNN4 probable inactive shikimate kinase like 1, chloroplastic1.1e-2039.13Show/hide
Query:  TDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRI---FAYHFCI----------LLLFGAA--------------DICQRIALFQTELHSVEILL
        TDLQFNIH PK EAMALNSS  LSLPSS+RRNH +PL I   F     I          L+  G +              ++ ++      EL    I L
Subjt:  TDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRI---FAYHFCI----------LLLFGAA--------------DICQRIALFQTELHSVEILL

Query:  ----------LRQGLIEVL--FFLASGIVLLPVANSEFSC--HKQMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLR-----ALLRHSITLWIYLPLQM
                  L + L +VL  ++  S  +++  +  E +   +KQ         E  V++ L +    V+    G ++     ALLRH ITLWI LPLQM
Subjt:  ----------LRQGLIEVL--FFLASGIVLLPVANSEFSC--HKQMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLR-----ALLRHSITLWIYLPLQM

Query:  IAEEFAEDQSQLP------------VLGQITSQNQKLQDGYATADAPISLQSM
        IAEEFAED+SQ P            VLGQITS  QK++DGYATADA ISLQ +
Subjt:  IAEEFAEDQSQLP------------VLGQITSQNQKLQDGYATADAPISLQSM

A0A5D3DET0 Putative inactive shikimate kinase like 11.1e-2039.13Show/hide
Query:  TDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRI---FAYHFCI----------LLLFGAA--------------DICQRIALFQTELHSVEILL
        TDLQFNIH PK EAMALNSS  LSLPSS+RRNH +PL I   F     I          L+  G +              ++ ++      EL    I L
Subjt:  TDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRI---FAYHFCI----------LLLFGAA--------------DICQRIALFQTELHSVEILL

Query:  ----------LRQGLIEVL--FFLASGIVLLPVANSEFSC--HKQMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLR-----ALLRHSITLWIYLPLQM
                  L + L +VL  ++  S  +++  +  E +   +KQ         E  V++ L +    V+    G ++     ALLRH ITLWI LPLQM
Subjt:  ----------LRQGLIEVL--FFLASGIVLLPVANSEFSC--HKQMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLR-----ALLRHSITLWIYLPLQM

Query:  IAEEFAEDQSQLP------------VLGQITSQNQKLQDGYATADAPISLQSM
        IAEEFAED+SQ P            VLGQITS  QK++DGYATADA ISLQ +
Subjt:  IAEEFAEDQSQLP------------VLGQITSQNQKLQDGYATADAPISLQSM

A0A6J1DV91 probable inactive shikimate kinase like 1, chloroplastic1.1e-1736.11Show/hide
Query:  DLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRI---FAYHFCI----------LLLFGAA---------------------DICQRI---ALFQT
        DLQF+I  PK+ AMALN SC L LPSSV R H +PL +   F +   I          L   GAA                     D+   +   ++F  
Subjt:  DLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRI---FAYHFCI----------LLLFGAA---------------------DICQRI---ALFQT

Query:  ELHSVEILLLRQGLIEVL--FFLASGIVLLPVANSEFSC--HKQMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLR-----ALLRHSITLWIYLPLQMI
         ++S +   L + L +VL  ++  S  +++  +    +   +K+         E  V++ L +    V+    G ++     ALLRH ITLWI LPLQMI
Subjt:  ELHSVEILLLRQGLIEVL--FFLASGIVLLPVANSEFSC--HKQMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLR-----ALLRHSITLWIYLPLQMI

Query:  AEEFAEDQSQLP------------VLGQITSQNQKLQDGYATADAPISLQSM
        AEEFAED SQLP            VLGQITS  Q+++DGYATADA ISLQ +
Subjt:  AEEFAEDQSQLP------------VLGQITSQNQKLQDGYATADAPISLQSM

A0A6J1JN35 probable inactive shikimate kinase like 1, chloroplastic isoform X25.1e-1533.99Show/hide
Query:  TDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPL---RIFAYHFCI----------LLLFGAA--------------DICQRIALFQTELHSVEILL
        TD QFNIH PK++ M+LNSS  L LP SVR N  +PL   R F +   I           +  G A              ++ ++      EL    I L
Subjt:  TDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPL---RIFAYHFCI----------LLLFGAA--------------DICQRIALFQTELHSVEILL

Query:  -------------LRQGLIEVLFFLASGIVLLPVAN-SEFSCHKQMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLR-----ALLRHSITLWIYLPLQM
                     L   ++   +F + G+V+      +    +K+         E  V++ L +    V+    G +R     ALLRH ITLWI +PLQ+
Subjt:  -------------LRQGLIEVLFFLASGIVLLPVAN-SEFSCHKQMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLR-----ALLRHSITLWIYLPLQM

Query:  IAEEFAEDQSQLP------------VLGQITSQNQKLQDGYATADAPISLQSM
        IAEEFAED+ QLP            VLGQITS  Q+++ GYATADA ISLQ +
Subjt:  IAEEFAEDQSQLP------------VLGQITSQNQKLQDGYATADAPISLQSM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCCCTCCCTAAATCAGCCGACTGATCTCCAATTCAATATACACTTTCCAAAAGTTGAAGCAATGGCCTTGAATTCGAGCTGCTTCTTGTCCCTGCCGTCCTCTGT
TCGTCGTAATCACAGAGTTCCACTTCGTATATTTGCTTACCACTTTTGCATTCTTCTGCTATTCGGCGCCGCAGATATTTGCCAACGAATTGCGTTGTTTCAGACGGAAC
TGCATTCTGTTGAGATACTATTACTTCGACAGGGACTCATAGAGGTACTTTTTTTCTTGGCGTCTGGTATTGTTCTCCTTCCTGTTGCTAATTCTGAATTTTCATGTCAT
AAACAAATGCATATAGTGAACGTTTACTTGTGGGAGCTAGTGGTGGTGAGGCTGCTGCCAAACTTTAGAAACGAAGTGATGAAAATGGTTTTCGGACATCTGAGGGCGCT
TTTGAGGCATAGCATAACGTTGTGGATTTATTTACCCCTGCAGATGATAGCAGAGGAATTTGCTGAAGATCAAAGCCAACTTCCAGTGCTTGGTCAAATAACTTCCCAGA
ACCAAAAATTACAAGATGGCTATGCCACGGCTGATGCTCCAATATCACTCCAAAGTATGTGA
mRNA sequenceShow/hide mRNA sequence
TTTTGGGAAGGGTCTCCGTTCCAATTGAGAGCATCGATGATTCCCTCCCTAAATCAGCCGACTGATCTCCAATTCAATATACACTTTCCAAAAGTTGAAGCAATGGCCTT
GAATTCGAGCTGCTTCTTGTCCCTGCCGTCCTCTGTTCGTCGTAATCACAGAGTTCCACTTCGTATATTTGCTTACCACTTTTGCATTCTTCTGCTATTCGGCGCCGCAG
ATATTTGCCAACGAATTGCGTTGTTTCAGACGGAACTGCATTCTGTTGAGATACTATTACTTCGACAGGGACTCATAGAGGTACTTTTTTTCTTGGCGTCTGGTATTGTT
CTCCTTCCTGTTGCTAATTCTGAATTTTCATGTCATAAACAAATGCATATAGTGAACGTTTACTTGTGGGAGCTAGTGGTGGTGAGGCTGCTGCCAAACTTTAGAAACGA
AGTGATGAAAATGGTTTTCGGACATCTGAGGGCGCTTTTGAGGCATAGCATAACGTTGTGGATTTATTTACCCCTGCAGATGATAGCAGAGGAATTTGCTGAAGATCAAA
GCCAACTTCCAGTGCTTGGTCAAATAACTTCCCAGAACCAAAAATTACAAGATGGCTATGCCACGGCTGATGCTCCAATATCACTCCAAAGTATGTGATCCTGATCCTTC
CCACACTTGCAATATTCGAGGTTTCCTGCATATTCTGGTTTCTAAAACCTCATGCCTCGAAGAACTAGCGAGTAATTTAGGATATGATGAACTTCAATGCTGTCGCAACC
GAAGACACGGCTTTGGAGGTATGTATCCTTACAATTCTTATAGTTGCCTGCGTCTCTAACTAGGGTGGAACCGTAAATTTATGGTTAAATTACAAATTTAGTTTGATTGT
GATGTCCTACATTGGTTGG
Protein sequenceShow/hide protein sequence
MIPSLNQPTDLQFNIHFPKVEAMALNSSCFLSLPSSVRRNHRVPLRIFAYHFCILLLFGAADICQRIALFQTELHSVEILLLRQGLIEVLFFLASGIVLLPVANSEFSCH
KQMHIVNVYLWELVVVRLLPNFRNEVMKMVFGHLRALLRHSITLWIYLPLQMIAEEFAEDQSQLPVLGQITSQNQKLQDGYATADAPISLQSM