; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg09661 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg09661
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionYrdC-like domain-containing protein
Genome locationCarg_Chr14:3642860..3645577
RNA-Seq ExpressionCarg09661
SyntenyCarg09661
Gene Ontology termsGO:0003725 - double-stranded RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581099.1 putative protein YciO, partial [Cucurbita argyrosperma subsp. sororia]1.5e-4898.15Show/hide
Query:  MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAVG
        MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKY APRFTKEGSLLYVKAESEEDAWKLE IVDLLKEGAVG
Subjt:  MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAVG

Query:  VIPTDTVY
        VIPTDTVY
Subjt:  VIPTDTVY
KAG7017829.1 hypothetical protein SDJN02_19695 [Cucurbita argyrosperma subsp. argyrosperma]2.3e-60100Show/hide
Query:  MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAVG
        MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAVG
Subjt:  MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAVG

Query:  VIPTDTVYFSLTSYVSHLLRFLYC
        VIPTDTVYFSLTSYVSHLLRFLYC
Subjt:  VIPTDTVYFSLTSYVSHLLRFLYC
XP_022935670.1 uncharacterized protein LOC111442458 [Cucurbita moschata]1.5e-4898.15Show/hide
Query:  MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAVG
        MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKY APRFTKEGSLLYVKAESEEDAWKLE IVDLLKEGAVG
Subjt:  MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAVG

Query:  VIPTDTVY
        VIPTDTVY
Subjt:  VIPTDTVY
XP_022984138.1 uncharacterized protein LOC111482522 [Cucurbita maxima]9.5e-4390.83Show/hide
Query:  MIANVKSSGYPSAA-SSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAV
        MI NVKSSGYPSAA SSLSSVRS APIRFPS PR VRFDGS TSRRLQVLAMAVKRSPKRLKY APRFTK+GSLLYVKAES EDAWKLE IVDLLKEGAV
Subjt:  MIANVKSSGYPSAA-SSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAV

Query:  GVIPTDTVY
        GVIPTDTVY
Subjt:  GVIPTDTVY
XP_023527501.1 uncharacterized protein LOC111790710 [Cucurbita pepo subsp. pepo]1.6e-4594.44Show/hide
Query:  MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAVG
        MIANVKSS YPSAASSLSSVRS APIRFPS PRTVRFDGSGTSRRLQVLAMAVKRSPKRLKY APRFTKEGSLLYVKAES EDAWKLE IVDLLKEGAVG
Subjt:  MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAVG

Query:  VIPTDTVY
        VIPTDTVY
Subjt:  VIPTDTVY
TrEMBL top hitse value%identityAlignment
A0A0A0LBV9 YrdC-like domain-containing protein1.2e-3577.78Show/hide
Query:  MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAVG
        MI NVK   +PS ASSLSS R+ APIRFPS P    FDG  TSRRLQVLAM VKRSPKRLKY APRFTKEGSL+YVKAES ED WKL+ IV+LLKEGAVG
Subjt:  MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAVG

Query:  VIPTDTVY
        VIPTDTVY
Subjt:  VIPTDTVY
A0A1S3BMX4 uncharacterized protein YciO isoform X12.9e-3779.63Show/hide
Query:  MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAVG
        MI NV+S+ +PS ASSLSS+RS APIRFPS P   RFDG  TSRRLQVLAM VKRSPKRLKY APRFTKEGSL+YVKAES ED WKL+ IV+LLKEGAVG
Subjt:  MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAVG

Query:  VIPTDTVY
        VIPTDTVY
Subjt:  VIPTDTVY
A0A1S4DY13 yrdC domain-containing protein, mitochondrial isoform X22.9e-3779.63Show/hide
Query:  MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAVG
        MI NV+S+ +PS ASSLSS+RS APIRFPS P   RFDG  TSRRLQVLAM VKRSPKRLKY APRFTKEGSL+YVKAES ED WKL+ IV+LLKEGAVG
Subjt:  MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAVG

Query:  VIPTDTVY
        VIPTDTVY
Subjt:  VIPTDTVY
A0A6J1FBB1 uncharacterized protein LOC1114424587.3e-4998.15Show/hide
Query:  MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAVG
        MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKY APRFTKEGSLLYVKAESEEDAWKLE IVDLLKEGAVG
Subjt:  MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAVG

Query:  VIPTDTVY
        VIPTDTVY
Subjt:  VIPTDTVY
A0A6J1J9P6 uncharacterized protein LOC1114825224.6e-4390.83Show/hide
Query:  MIANVKSSGYPSAA-SSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAV
        MI NVKSSGYPSAA SSLSSVRS APIRFPS PR VRFDGS TSRRLQVLAMAVKRSPKRLKY APRFTK+GSLLYVKAES EDAWKLE IVDLLKEGAV
Subjt:  MIANVKSSGYPSAA-SSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAV

Query:  GVIPTDTVY
        GVIPTDTVY
Subjt:  GVIPTDTVY
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G01920.1 DHBP synthase RibB-like alpha/beta domain3.0e-1850.46Show/hide
Query:  IANVKSSGYPSAASSLSSVRSLAPIRFPS-LPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAE-SEEDAWKLEHIVDLLKEGAV
        +A  K  G   AA  L  + S    R PS LP T     +  S R  ++A+A KRSPKRLKY  PRFTKEG L+Y++ +    D+WKL+ ++DLLK+GAV
Subjt:  IANVKSSGYPSAASSLSSVRSLAPIRFPS-LPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAE-SEEDAWKLEHIVDLLKEGAV

Query:  GVIPTDTVY
        GVIPTDTVY
Subjt:  GVIPTDTVY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGCCAATGTCAAATCCAGCGGATATCCGTCTGCTGCTTCTTCTCTCTCTTCCGTTCGATCCTTAGCGCCAATACGGTTCCCTTCGCTACCGCGTACCGTTCGTTT
CGACGGTTCTGGAACTTCACGGCGGCTCCAGGTCCTCGCCATGGCTGTGAAGCGGAGTCCTAAGCGCCTCAAGTACTGTGCTCCACGCTTCACCAAGGAAGGGAGCTTGC
TATATGTCAAAGCTGAATCAGAAGAGGATGCTTGGAAATTAGAACACATAGTAGATCTTCTAAAAGAAGGCGCAGTTGGGGTTATTCCTACGGATACAGTGTATTTCTCT
CTAACTTCATATGTCTCTCACCTTTTGAGATTTCTTTATTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATTTTGTATATATAAAAGTTAAAAGGGGTAATTTGTAATTTAATATATTTTAAATTAAAAAAAAAAATCCAATTGAGTTGTAATTGGAATGTGACGTGGCATCCAGGTGG
GATATTCTCTATCCATGATGTGCTTCGTCTCCGATCGCAGCTTCTGGATTCTTTTACTCGCAGTTCTTAATTCCGGCGATGCTGTGACAGGGATTCTCCAATCTTCAAAA
TGATTGCCAATGTCAAATCCAGCGGATATCCGTCTGCTGCTTCTTCTCTCTCTTCCGTTCGATCCTTAGCGCCAATACGGTTCCCTTCGCTACCGCGTACCGTTCGTTTC
GACGGTTCTGGAACTTCACGGCGGCTCCAGGTCCTCGCCATGGCTGTGAAGCGGAGTCCTAAGCGCCTCAAGTACTGTGCTCCACGCTTCACCAAGGAAGGGAGCTTGCT
ATATGTCAAAGCTGAATCAGAAGAGGATGCTTGGAAATTAGAACACATAGTAGATCTTCTAAAAGAAGGCGCAGTTGGGGTTATTCCTACGGATACAGTGTATTTCTCTC
TAACTTCATATGTCTCTCACCTTTTGAGATTTCTTTATTGCTAACATGGCTGACTCTTAAGATGAAATTGGACGCTTGAACGAGTAAATTTGTTCACAGTTTGTAAGAAT
CATACTTGCACTCTCTGTGTCATGCCACCCAGATTTTAGGCTGTCTTAACTCTGTTGAGAACGAGCTTCAAACTTCTACAGTGAATTTTTGGTTTCCCATGAGTATACTT
TAGTCGGAATATTATTGGTTCGTTCAAATTGATTGTATTTGTATGGATATTCTACTTGTGATGATAAGAGTTCTGGAGGAGATGTAGAAGATTTGAGTTTGTGAATTTAA
ATTTACAGTGACAAGGATTGCAAAAGGAAATTTGTTCAAGTTTCTTATGCTTTTGATGGACCATCTCGTGAATTTTGATTTCACAGCATTTTTGTTCCATTTCATAGATC
TTTGTTTGTCTCTTCCTTTCATGTGTAACGGGGTGCGTGTGCTTATATTTTTCAAGGTATGCAATAGTTTGTGATTTGAAGAACCCCTCAGCCATTGAACGAATGCGAAG
GTCGAAGTTGTTAATTTGTTATGCTATACTAGATGATATATTTGATTAGTTACTTCAGTTTCTCTCCCCTGATGCTAAAGTTTATTGTGCTGTTTAATGCAGGATCAAGA
ATATAGAACCTTCCAAGGTGTGCTTATTCTTAACAATCTCTGTAGTGTGCTTTAAATAATGCTCATGTGGCCCTTCAAACTCTTGAACCACAACTACAATGCTCAAATGA
TGCTGGACAAGATAATTTAATCTACTTATTATCGTTCATGTCTGTCTATCTACAGCCTACCTTTCCATTTTTTCATTATGTTCCTTAATTTTCACTTATAATCAACTATG
CAGCCTCTAAGTATTTTGTGCCACTCTTTCCGGGACATCGATAAATATACTACAGGGTTTCCCTGTGGTGACGGCCAAGGCCATTCAAATATATTTCGCATGGTTAAGCA
TTGCCTACCTGGACCATATACCTTCATCTTAACTGCAAGCAAAGAACTGCCTAAACAGTACATAGGGTACGGCACAACCACTGCAAAACATGCATCAAGGAAGAATGTCG
GTGTGCGCATTCCCGATGATGCAATATGTCAAGCAGTACTGGAAAAGATGGATGCTCCATTGATATCCACTAGGTTAGTACAATCAATACTCTTCTAGTTCTCTCTCCCT
TCCTCTCAACGCGTCTCTTGATTGGTTTCGAGAACTGAAAAGACCTTCTGTACAAGCTGTTTAACAATTGCTCTCCATATCTGTTTGCCTATTTCTCATGCAGCTATTCG
ACCCCATAACGCAGAGTTTTATTTTGGTTTAATTGACTATCAATGTTTTAACAGGATTCTTTCCATTCCTTCCTATCCATTTCTGGATTGATCATTGGAAGGGGAGACTA
TTTGTATTAGTTGATTTAAGATTGTTTTAAACGATCGAATCCTAAAAATAGTGAAAGGAAATAAGTATTTCAGAAGTGATGATTTGTTCAAACTATATGTTTGTAACGGC
TCAAGCCCACCGCCAGCAGATATTGTCCTCTTTGGGCTT
Protein sequenceShow/hide protein sequence
MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYCAPRFTKEGSLLYVKAESEEDAWKLEHIVDLLKEGAVGVIPTDTVYFS
LTSYVSHLLRFLYC