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Carg09800 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg09800
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionpentatricopeptide repeat-containing protein At1g61870, mitochondrial-like
Genome locationCarg_Chr14:2845893..2846264
RNA-Seq ExpressionCarg09800
SyntenyCarg09800
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6580947.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]6.1e-4986.99Show/hide
Query:  MVSKGVKPNSSSYDAIIHGYGN------------SMLEDGHVSPSSPIYYSLIRSMVKEGEFTCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEAKEVVE
        MVSKGVKPNSSSYDAIIHGYGN            SMLEDGHVSPSSPIY SLI+SMVKEGEFTCREIIKRRWVP FEAMEGLVRGLVG+SKVEEAKEVVE
Subjt:  MVSKGVKPNSSSYDAIIHGYGN------------SMLEDGHVSPSSPIYYSLIRSMVKEGEFTCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEAKEVVE

Query:  KMKKMLKGPAVDSWGKIEAALSL
        KMKKMLKGPAVDSWGKIEAALSL
Subjt:  KMKKMLKGPAVDSWGKIEAALSL

KAG7017691.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-54100Show/hide
Query:  MVSKGVKPNSSSYDAIIHGYGNSMLEDGHVSPSSPIYYSLIRSMVKEGEFTCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEAKEVVEKMKKMLKGPAVD
        MVSKGVKPNSSSYDAIIHGYGNSMLEDGHVSPSSPIYYSLIRSMVKEGEFTCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEAKEVVEKMKKMLKGPAVD
Subjt:  MVSKGVKPNSSSYDAIIHGYGNSMLEDGHVSPSSPIYYSLIRSMVKEGEFTCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEAKEVVEKMKKMLKGPAVD

Query:  SWGKIEAALSL
        SWGKIEAALSL
Subjt:  SWGKIEAALSL

XP_022934713.1 pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucurbita moschata]1.8e-4582.03Show/hide
Query:  MVSKGVKPNSSSYDAIIHGYGN------------SMLEDGHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEA
        MVSKGVKPNSSSYDAIIHGYGN            SMLEDGHVSPSS IYYSLIRSMVKEGEF     TCREIIKRRWVP FEAMEGLVRGLV +SKVEEA
Subjt:  MVSKGVKPNSSSYDAIIHGYGN------------SMLEDGHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEA

Query:  KEVVEKMKKMLKGPAVDSWGKIEAALSL
        KEVVEK KKMLKGPA+DSWGKIEAALSL
Subjt:  KEVVEKMKKMLKGPAVDSWGKIEAALSL

XP_022983789.1 pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isoform X1 [Cucurbita maxima]1.1e-4582.81Show/hide
Query:  MVSKGVKPNSSSYDAIIHGYGN------------SMLEDGHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEA
        MVSKGVKPNSSSYDAII+GYGN            SMLEDGHVS SS IYYSLIRSMVKEGEF     TCREIIKRRWVP FEAMEGLVRGLVG+SKVEEA
Subjt:  MVSKGVKPNSSSYDAIIHGYGN------------SMLEDGHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEA

Query:  KEVVEKMKKMLKGPAVDSWGKIEAALSL
        KEVVEKMKKMLKGPAVDSWGKIEAALSL
Subjt:  KEVVEKMKKMLKGPAVDSWGKIEAALSL

XP_022983790.1 pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isoform X2 [Cucurbita maxima]1.5e-4786.18Show/hide
Query:  MVSKGVKPNSSSYDAIIHGYGN------------SMLEDGHVSPSSPIYYSLIRSMVKEGEFTCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEAKEVVE
        MVSKGVKPNSSSYDAII+GYGN            SMLEDGHVS SS IYYSLIRSMVKEGEFTCREIIKRRWVP FEAMEGLVRGLVG+SKVEEAKEVVE
Subjt:  MVSKGVKPNSSSYDAIIHGYGN------------SMLEDGHVSPSSPIYYSLIRSMVKEGEFTCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEAKEVVE

Query:  KMKKMLKGPAVDSWGKIEAALSL
        KMKKMLKGPAVDSWGKIEAALSL
Subjt:  KMKKMLKGPAVDSWGKIEAALSL

TrEMBL top hitse value%identityAlignment
A0A0A0LF76 Uncharacterized protein3.3e-4074.22Show/hide
Query:  MVSKGVKPNSSSYDAIIHGYGN------------SMLEDGHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEA
        M+SKGVKPNSSSYD+IIHGY +             +LEDGHVSP+S IYY LIRSMVKEGEF     TCRE IKRRWVP FEAME LVRGLV MSKVEEA
Subjt:  MVSKGVKPNSSSYDAIIHGYGN------------SMLEDGHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEA

Query:  KEVVEKMKKMLKGPAVDSWGKIEAALSL
        KEVVEKMKK LKGPAVDSW KIEAAL L
Subjt:  KEVVEKMKKMLKGPAVDSWGKIEAALSL

A0A5A7UGZ0 Pentatricopeptide repeat-containing protein3.6e-3971.09Show/hide
Query:  MVSKGVKPNSSSYDAIIHGYGN------------SMLEDGHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEA
        M+SKGVKPNSSSYD+IIHGY +             MLEDGHVSP+S IY+ LIRSMVKEGEF     TCR+++KRRWVP FE ME LVRGLV MSKVEEA
Subjt:  MVSKGVKPNSSSYDAIIHGYGN------------SMLEDGHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEA

Query:  KEVVEKMKKMLKGPAVDSWGKIEAALSL
        KEVVEKMKK LKGPAVDSW KIEA L+L
Subjt:  KEVVEKMKKMLKGPAVDSWGKIEAALSL

A0A6J1F8F5 pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like8.9e-4682.03Show/hide
Query:  MVSKGVKPNSSSYDAIIHGYGN------------SMLEDGHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEA
        MVSKGVKPNSSSYDAIIHGYGN            SMLEDGHVSPSS IYYSLIRSMVKEGEF     TCREIIKRRWVP FEAMEGLVRGLV +SKVEEA
Subjt:  MVSKGVKPNSSSYDAIIHGYGN------------SMLEDGHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEA

Query:  KEVVEKMKKMLKGPAVDSWGKIEAALSL
        KEVVEK KKMLKGPA+DSWGKIEAALSL
Subjt:  KEVVEKMKKMLKGPAVDSWGKIEAALSL

A0A6J1J6X0 pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isoform X27.3e-4886.18Show/hide
Query:  MVSKGVKPNSSSYDAIIHGYGN------------SMLEDGHVSPSSPIYYSLIRSMVKEGEFTCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEAKEVVE
        MVSKGVKPNSSSYDAII+GYGN            SMLEDGHVS SS IYYSLIRSMVKEGEFTCREIIKRRWVP FEAMEGLVRGLVG+SKVEEAKEVVE
Subjt:  MVSKGVKPNSSSYDAIIHGYGN------------SMLEDGHVSPSSPIYYSLIRSMVKEGEFTCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEAKEVVE

Query:  KMKKMLKGPAVDSWGKIEAALSL
        KMKKMLKGPAVDSWGKIEAALSL
Subjt:  KMKKMLKGPAVDSWGKIEAALSL

A0A6J1J8H6 pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isoform X15.2e-4682.81Show/hide
Query:  MVSKGVKPNSSSYDAIIHGYGN------------SMLEDGHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEA
        MVSKGVKPNSSSYDAII+GYGN            SMLEDGHVS SS IYYSLIRSMVKEGEF     TCREIIKRRWVP FEAMEGLVRGLVG+SKVEEA
Subjt:  MVSKGVKPNSSSYDAIIHGYGN------------SMLEDGHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEA

Query:  KEVVEKMKKMLKGPAVDSWGKIEAALSL
        KEVVEKMKKMLKGPAVDSWGKIEAALSL
Subjt:  KEVVEKMKKMLKGPAVDSWGKIEAALSL

SwissProt top hitse value%identityAlignment
Q8GW57 Pentatricopeptide repeat-containing protein At1g80150, mitochondrial1.2e-0425.25Show/hide
Query:  VKPNSSSYDAIIHGYGNSMLED-----------GHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEAKEVVE
        V+P+S +Y+ +I G+  +   D               P+  IY ++I  + K G F      C++ ++++W P  + +E L++GLV   ++++AK ++E
Subjt:  VKPNSSSYDAIIHGYGNSMLED-----------GHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEAKEVVE

Q8LE47 Pentatricopeptide repeat-containing protein At1g61870, mitochondrial1.1e-1336Show/hide
Query:  MVSKGVKPNSSSYDAIIHGYGN-----------SMLEDGHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEAK
        M+S G+KPN+ +Y  +IHG+ N            ++ +    P S  Y++LI  + K G+F      C+E +++ WVP F  M+ LV GL   SKVEEAK
Subjt:  MVSKGVKPNSSSYDAIIHGYGN-----------SMLEDGHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEAK

Query:  EVVEKMKKMLKGPAVDSWGKIEAAL
        E++ ++K+      V+ W ++EAAL
Subjt:  EVVEKMKKMLKGPAVDSWGKIEAAL

Q9SAB4 Pentatricopeptide repeat-containing protein At1g11630, mitochondrial5.6e-1335.94Show/hide
Query:  MVSKGVKPNSSSYDAIIHGYGNS------------MLEDGHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEA
        ++S  ++PNS +Y  +IHG+ +             M+ +G+  P S  Y++LI  + K G+F      CRE +++ WVP F  M+ LV GL   SKV+EA
Subjt:  MVSKGVKPNSSSYDAIIHGYGNS------------MLEDGHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEA

Query:  KEVVEKMKKMLKGPAVDSWGKIEAALSL
        KE++  +K+      VD W ++EAAL L
Subjt:  KEVVEKMKKMLKGPAVDSWGKIEAALSL

Arabidopsis top hitse value%identityAlignment
AT1G11630.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.0e-1435.94Show/hide
Query:  MVSKGVKPNSSSYDAIIHGYGNS------------MLEDGHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEA
        ++S  ++PNS +Y  +IHG+ +             M+ +G+  P S  Y++LI  + K G+F      CRE +++ WVP F  M+ LV GL   SKV+EA
Subjt:  MVSKGVKPNSSSYDAIIHGYGNS------------MLEDGHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEA

Query:  KEVVEKMKKMLKGPAVDSWGKIEAALSL
        KE++  +K+      VD W ++EAAL L
Subjt:  KEVVEKMKKMLKGPAVDSWGKIEAALSL

AT1G61870.1 pentatricopeptide repeat 3368.0e-1536Show/hide
Query:  MVSKGVKPNSSSYDAIIHGYGN-----------SMLEDGHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEAK
        M+S G+KPN+ +Y  +IHG+ N            ++ +    P S  Y++LI  + K G+F      C+E +++ WVP F  M+ LV GL   SKVEEAK
Subjt:  MVSKGVKPNSSSYDAIIHGYGN-----------SMLEDGHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEAK

Query:  EVVEKMKKMLKGPAVDSWGKIEAAL
        E++ ++K+      V+ W ++EAAL
Subjt:  EVVEKMKKMLKGPAVDSWGKIEAAL

AT1G80150.1 Tetratricopeptide repeat (TPR)-like superfamily protein8.9e-0625.25Show/hide
Query:  VKPNSSSYDAIIHGYGNSMLED-----------GHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEAKEVVE
        V+P+S +Y+ +I G+  +   D               P+  IY ++I  + K G F      C++ ++++W P  + +E L++GLV   ++++AK ++E
Subjt:  VKPNSSSYDAIIHGYGNSMLED-----------GHVSPSSPIYYSLIRSMVKEGEF-----TCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEAKEVVE

AT4G01400.3 FUNCTIONS IN: molecular_function unknown9.8e-0531.09Show/hide
Query:  MVSKGVKPNSSSYDAIIHGYG------------NSMLEDGHVSPSSPIYYSLI-----RSMVKEGEFTCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEA
        M  KG  P+   Y+ +I G+             + ML +G  SP+S  Y +LI     + M  EG+    E+I + + P F     LV+G     KVEEA
Subjt:  MVSKGVKPNSSSYDAIIHGYG------------NSMLEDGHVSPSSPIYYSLI-----RSMVKEGEFTCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEA

Query:  KEVVEKMKKMLKGPAVDSW
         +VVE + K  +    D+W
Subjt:  KEVVEKMKKMLKGPAVDSW

AT4G36680.1 Tetratricopeptide repeat (TPR)-like superfamily protein9.8e-0524.41Show/hide
Query:  MVSKGVKPNSSSYDAIIHGYGN-----------SMLEDGHVSPSSPIYYSLI-----RSMVKEGEFTCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEAK
        M S G+KP++ SY+ ++  Y               LE  + +P++  + +LI       + ++G    ++ +    +P F  ++ LV GLV   K ++AK
Subjt:  MVSKGVKPNSSSYDAIIHGYGN-----------SMLEDGHVSPSSPIYYSLI-----RSMVKEGEFTCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEAK

Query:  EVVEKMKKMLKGPAVDSWGKIEAALSL
         ++  +KK      +++W K+E  L L
Subjt:  EVVEKMKKMLKGPAVDSWGKIEAALSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCAAAGGGTGTGAAGCCCAATTCTAGTAGCTATGATGCAATCATCCATGGCTACGGCAATAGTATGCTGGAGGATGGCCATGTCTCACCCAGTTCGCCAATCTA
TTATAGTTTGATTCGAAGCATGGTTAAGGAGGGGGAGTTTACATGTAGAGAGATCATAAAGAGAAGGTGGGTTCCTCAATTTGAGGCAATGGAGGGCCTGGTTCGTGGAT
TGGTGGGTATGTCAAAGGTTGAAGAGGCAAAAGAGGTTGTTGAAAAGATGAAGAAGATGCTCAAAGGACCTGCTGTGGATTCGTGGGGGAAAATTGAAGCTGCTCTTTCT
CTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCAAAGGGTGTGAAGCCCAATTCTAGTAGCTATGATGCAATCATCCATGGCTACGGCAATAGTATGCTGGAGGATGGCCATGTCTCACCCAGTTCGCCAATCTA
TTATAGTTTGATTCGAAGCATGGTTAAGGAGGGGGAGTTTACATGTAGAGAGATCATAAAGAGAAGGTGGGTTCCTCAATTTGAGGCAATGGAGGGCCTGGTTCGTGGAT
TGGTGGGTATGTCAAAGGTTGAAGAGGCAAAAGAGGTTGTTGAAAAGATGAAGAAGATGCTCAAAGGACCTGCTGTGGATTCGTGGGGGAAAATTGAAGCTGCTCTTTCT
CTGTAG
Protein sequenceShow/hide protein sequence
MVSKGVKPNSSSYDAIIHGYGNSMLEDGHVSPSSPIYYSLIRSMVKEGEFTCREIIKRRWVPQFEAMEGLVRGLVGMSKVEEAKEVVEKMKKMLKGPAVDSWGKIEAALS
L