CuGenDBv2

Gene ID	Carg09933
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Genome location	Carg_Chr10:2477318..2480965
RNA-Seq Expression	Carg09933
Synteny	Carg09933
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005689 - U12-type spliceosomal complex (cellular component)
InterPro domains	IPR039690 - U11/U12 small nuclear ribonucleoprotein 25kDa protein IPR040610 - SNRNP25, ubiquitin-like domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6589833.1 hypothetical protein SDJN03_15256, partial [Cucurbita argyrosperma subsp. sororia]

6.9e-29

96.88

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Query:  RTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKR
        +TATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDK+
Subjt:  RTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKR

KAG7023503.1 hypothetical protein SDJN02_14529 [Cucurbita argyrosperma subsp. argyrosperma]

3.0e-56

100

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Query:  MSRIEPYVSDSCSEQQFSLQEATAAASPPPPLRAKIGRLFFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEII
        MSRIEPYVSDSCSEQQFSLQEATAAASPPPPLRAKIGRLFFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEII
Subjt:  MSRIEPYVSDSCSEQQFSLQEATAAASPPPPLRAKIGRLFFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEII

Query:  DVDKRGFGD
        DVDKRGFGD
Subjt:  DVDKRGFGD

XP_008443964.1 PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo]

2.4e-21

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Query:  MSRIEPYVSDSCS-EQQFSLQEATAAAS----PPPPLRAKIGRL--------FFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKL
        MS+IEP V DSC    +F       +      PP  LR  + +L          RTATVAAVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL
Subjt:  MSRIEPYVSDSCS-EQQFSLQEATAAAS----PPPPLRAKIGRL--------FFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKL

Query:  IDDKSRIKQFEIIDVDKRGF
        +DDKSRI+ F I D D+  F
Subjt:  IDDKSRIKQFEIIDVDKRGF

XP_011655436.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus]

4.0e-21

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Query:  MSRIEPYVSDSCS-EQQFSLQEATAAAS----PPPPLRAKIGRL--------FFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKL
        MS IEP V DSC    +F       +      PP  LR  + +L          RTATVAAVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL
Subjt:  MSRIEPYVSDSCS-EQQFSLQEATAAAS----PPPPLRAKIGRL--------FFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKL

Query:  IDDKSRIKQFEIIDVDKRGF
        +DDKSRI+ F I D D+  F
Subjt:  IDDKSRIKQFEIIDVDKRGF

XP_038880358.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida]

4.6e-25

58.82

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Query:  MSRIEPYVSDSCS-----EQQFSLQEATAAASPPPPLRAKIGRL--------FFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKL
        MSRIEP V DSC            +       PP  +R  + +L          RTATVAAVRDAVESVFCGMSMNKEDDKISWPHV  HFCLCYKH+KL
Subjt:  MSRIEPYVSDSCS-----EQQFSLQEATAAASPPPPLRAKIGRL--------FFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKL

Query:  IDDKSRIKQFEIIDVDKRG
        IDDKSRIK F I D D+ G
Subjt:  IDDKSRIKQFEIIDVDKRG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LT94 Ubiquitin_4 domain-containing protein

2.0e-21

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Query:  MSRIEPYVSDSCS-EQQFSLQEATAAAS----PPPPLRAKIGRL--------FFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKL
        MS IEP V DSC    +F       +      PP  LR  + +L          RTATVAAVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL
Subjt:  MSRIEPYVSDSCS-EQQFSLQEATAAAS----PPPPLRAKIGRL--------FFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKL

Query:  IDDKSRIKQFEIIDVDKRGF
        +DDKSRI+ F I D D+  F
Subjt:  IDDKSRIKQFEIIDVDKRGF

A0A1S3B9C0 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1

2.0e-21

55.56

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Query:  MSRIEPYVSDSCS-EQQFSLQEATAAAS----PPPPLRAKIGRL--------FFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKL
        MS+IEP V DSC    +F       +      PP  LR  + +L          RTATVAAVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL
Subjt:  MSRIEPYVSDSCS-EQQFSLQEATAAAS----PPPPLRAKIGRL--------FFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKL

Query:  IDDKSRIKQFEIIDVDK
        +DDKSRI+ F I D D+
Subjt:  IDDKSRIKQFEIIDVDK

A0A1S3BA12 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2

1.1e-21

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Query:  MSRIEPYVSDSCS-EQQFSLQEATAAAS----PPPPLRAKIGRL--------FFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKL
        MS+IEP V DSC    +F       +      PP  LR  + +L          RTATVAAVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL
Subjt:  MSRIEPYVSDSCS-EQQFSLQEATAAAS----PPPPLRAKIGRL--------FFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKL

Query:  IDDKSRIKQFEIIDVDKRGF
        +DDKSRI+ F I D D+  F
Subjt:  IDDKSRIKQFEIIDVDKRGF

A0A5A7U4H4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2

1.1e-21

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Query:  MSRIEPYVSDSCS-EQQFSLQEATAAAS----PPPPLRAKIGRL--------FFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKL
        MS+IEP V DSC    +F       +      PP  LR  + +L          RTATVAAVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL
Subjt:  MSRIEPYVSDSCS-EQQFSLQEATAAAS----PPPPLRAKIGRL--------FFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKL

Query:  IDDKSRIKQFEIIDVDKRGF
        +DDKSRI+ F I D D+  F
Subjt:  IDDKSRIKQFEIIDVDKRGF

A0A6J1EHC7 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like

4.1e-19

50.86

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Query:  MSRIEPYVSDSCS-----EQQFSLQEATAAASPPPPLRAKIGRL--------FFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKL
        M RIEP + DSC            +       P   L   + +L          R A+VA +R+AVESVFCGMSMN+ED KISWPHV  HFCLCYKHYKL
Subjt:  MSRIEPYVSDSCS-----EQQFSLQEATAAASPPPPLRAKIGRL--------FFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKL

Query:  IDDKSRIKQFEIIDVD
        ID+KSRIK+F I D D
Subjt:  IDDKSRIKQFEIIDVD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G80060.1 Ubiquitin-like superfamily protein

6.0e-07

37.08

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Query:  PPPLRAKI------GRLF----FRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRGF
        PP  R K+      G LF     +  +VA ++ AVE VF  +S  +    ISW HV  HFCLCY+  +L++DK+ I+   + D D+  F
Subjt:  PPPLRAKI------GRLF----FRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRGF

AT5G25340.1 Ubiquitin-like superfamily protein

1.1e-05

34.09

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Query:  PPPPLRAKIGRL--------FFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRGF
        P  P+R  + +L           +ATV  ++ A+E+ F  +   K   KISW HV  HFCLC+   KLI D   I  + + D D+  F
Subjt:  PPPPLRAKIGRL--------FFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRGF

Sequences

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CDS sequence

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ATGTCTCGTATTGAGCCCTATGTTTCGGATTCTTGCTCGGAGCAACAGTTTTCGCTACAAGAGGCTACCGCCGCAGCTTCTCCTCCTCCTCCTCTCCGTGCTAAAATTGG
ACGGCTCTTCTTTCGGACGGCGACGGTGGCAGCAGTTAGAGACGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAAAGAAGATGACAAGATTTCTTGGCCACATG
TGCGGTGTCATTTTTGCTTATGCTATAAGCATTACAAGCTGATCGACGACAAATCACGTATCAAACAGTTTGAAATCATAGATGTTGATAAGAGAGGATTTGGAGATTGA

mRNA sequence

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AAATAATCGCTTCCCGCTTTCACAGCTAAACCAACGAACAAACCAGAATGTCCCTTCGCAATTTTTCGAAACCCTAGACCTCACTGAAAATTGCATTTGGATTTCCACGC
TCTGATCTTCAAAAATCAATACCTTCTTCGATTCGTAACTCCAATTCTCCATTATTCGTCTTTCTAGTGTCTGAAATTTTGAGTTCAGGTCGATTCATGTCTCGTATTGA
GCCCTATGTTTCGGATTCTTGCTCGGAGCAACAGTTTTCGCTACAAGAGGCTACCGCCGCAGCTTCTCCTCCTCCTCCTCTCCGTGCTAAAATTGGACGGCTCTTCTTTC
GGACGGCGACGGTGGCAGCAGTTAGAGACGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAAAGAAGATGACAAGATTTCTTGGCCACATGTGCGGTGTCATTTT
TGCTTATGCTATAAGCATTACAAGCTGATCGACGACAAATCACGTATCAAACAGTTTGAAATCATAGATGTTGATAAGAGAGGATTTGGAGATTGATCACCTTACATGCT
GCTTTCCGATGTTCAATGGAGAAGCTCTGAAGTTTTGGGAGTAGGTTAGGCCTTCAGGTTTCTTCTTGTACCTCCCTTGTGAAGAAGATAAGCGGCAGTGAGATGTTAGG
ATGGCAAAGTCGTTGAGATCTTGCAACGGAGTCAGGGTCTTCACAACTTCGTCCATGGTCGGACGTAGTTTCGGGTCCCTGCTCAGGCAACTGCAAGCAAGCTGGGAGAC
CTTCTGCACCCCTTTAATGGAATACTTGAATTCCAAGCGGGGATCCACTATATGATATAGCTTTCTTTTATCACCTAAATATGGCCGAGCCCATGACACAAGGTTTTGCT
CCCCACTCGGACGTTTCTTGTCCATGGATCTTCTCCCTGTTACAATCTCAAGAAGCACAACACCAAAGCTATAAACATCGTTCTTCGACGTCAGATGTCCTGTGATCAAA
TCAAGAAAAGTTGGAAGTTATGTCAGATATCAGTCATTACTTAAGATTCAATTCTCGGTTTCAACTAAAATTCCTCCACGAAGGCTCGCACAAACAATTTAGTATCGAGG
GGTGTCATGTAGTTAAAACATCTTCTACGGATATCAACCTGTCATTACATATTCAGGAGCAGCATAGCCATACGTCCCAATTACCCTGGTAGAAACATGTGTTTTGTCTC
CTTGAGGCCCTGCTTTCGCAAAGCCAAAATCTGAAAGCTTTGCATTGTATTCCTGTAAACAAATGTCATATGTATAATGAGATAAAGAAATTACTCGAAACATTTGGAGC
ATTGTCATTTGGAACCGATGGAACCGATGGAACCGACCGAATCAAGCAAGATATTGGATGTCTTAAAATCTCTATAGATAACAGGTACTGGGGCATTATGAAGAAAGGCC
AATCCTTTTGCCGCTTTGAGGGCAATCTTAATCCTATTGGACCATGGAAGAGGAATAATCCCTGCACCAATCATGAATATAAGCATCTGTACCCCAACACCTTGTCTGTA
ACTAAGAGATAGAGATTCTTACTTCTGAAAAGATGGTTTTCCAGACTTCCACGGCTCATGAACTCATAAACAAGCAAATGTTGATCATCTTCGTTACAGTAACCTATAAG
CTTCACAAGATTTGGATGGTGAAGTTGTCCAAGAAAGACAACCTCAGCCTCCCATTCTCTATGGCCTTGAAGACCATCAAGTTTCAAGCTCTTAACAGCTACTGTAATTC
CTGATCCGGGTTTTGCAGGGGCTGTCCCATTCTCTTCAATCCATCCTTTAAAGACAAATCCAAATCCACCTTCCCCAAGAATGCTATCAGGTCTAAAGTTTCCTGTTGCT
GCCTTCAGCTCATGAAAAGAGAACTGAAGTAGTTTGCTTGTTGATTTGTTGTCTGATGGTGATGGATTGGCATTATCAGAGGCTAGCTCAGCTTCATTCGAGGTAGAGAG
TTCTCTGTTGCTAGCATTTAAACACCGTGTTTCAGTAGCTGCAATCACAAAAGGTCAGTATCTTCTTAAGAACAATAAGCCTTCTTTTCACAGCCTACAAGCCATAGATG
AACATGAGAAGACAACCAAA

Protein sequence

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MSRIEPYVSDSCSEQQFSLQEATAAASPPPPLRAKIGRLFFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRGFGD

Carg09933 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome