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Carg09968 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg09968
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-type domain-containing protein
Genome locationCarg_Chr10:2306792..2307916
RNA-Seq ExpressionCarg09968
SyntenyCarg09968
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589799.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]2.1e-60100Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
        MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN

Query:  WTKLNWTGVEQDKCRQC
        WTKLNWTGVEQDKCRQC
Subjt:  WTKLNWTGVEQDKCRQC

KAG7023470.1 hypothetical protein SDJN02_14495 [Cucurbita argyrosperma subsp. argyrosperma]1.5e-61100Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
        MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN

Query:  WTKLNWTGVEQDKCRQCW
        WTKLNWTGVEQDKCRQCW
Subjt:  WTKLNWTGVEQDKCRQCW

XP_022921934.1 uncharacterized protein LOC111430042 isoform X1 [Cucurbita moschata]1.8e-5998.31Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
        MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHET LASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN

Query:  WTKLNWTGVEQDKCRQCW
        WTKLNWTGVEQDKC QCW
Subjt:  WTKLNWTGVEQDKCRQCW

XP_022921935.1 uncharacterized protein LOC111430042 isoform X2 [Cucurbita moschata]6.7e-5494.07Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
        MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHET LASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSR     KLN
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN

Query:  WTKLNWTGVEQDKCRQCW
        WTKLNWTGVEQDKC QCW
Subjt:  WTKLNWTGVEQDKCRQCW

XP_023515554.1 uncharacterized protein LOC111779678 [Cucurbita pepo subsp. pepo]3.3e-5391.53Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
        MAGMLPGVECARRRRCHQNKVWSDSPH+AAQALTRRSVLCLYTSNHET LASNPSLERSLL+EADEDDKLDGSAREAKRRLDERLRTQRKSRKF     N
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN

Query:  WTKLNWTGVEQDKCRQCW
        WTKLNWT VEQDKC QCW
Subjt:  WTKLNWTGVEQDKCRQCW

TrEMBL top hitse value%identityAlignment
A0A1S3B9W3 uncharacterized protein LOC103487385 isoform X12.4e-4173.17Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERL-RTQRKS----RKFN
        MAGMLPGVECARRRRCHQNK+WSDSP + AQ LTRRSVLCLYTSNHE  L SNPS++R LL+EA  +D+LDG AREAKRRLDERL RTQRKS    R+  
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERL-RTQRKS----RKFN

Query:  WTKLNWTKLNWTGVEQDKCRQCW
          K +W KLNW GVE+DKC QCW
Subjt:  WTKLNWTKLNWTGVEQDKCRQCW

A0A6J1C2J4 uncharacterized protein LOC1110068552.0e-4082.14Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSR--------
        MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRSVLCLYTSNHET LASNPSL+RSLL   DEDDKLD  AREAKRRLDERLRTQRKS         
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSR--------

Query:  -KFNWTKLNWTK
         KF W+KLNWTK
Subjt:  -KFNWTKLNWTK

A0A6J1E1Y4 uncharacterized protein LOC111430042 isoform X18.8e-6098.31Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
        MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHET LASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN

Query:  WTKLNWTGVEQDKCRQCW
        WTKLNWTGVEQDKC QCW
Subjt:  WTKLNWTGVEQDKCRQCW

A0A6J1E765 uncharacterized protein LOC111430042 isoform X23.2e-5494.07Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
        MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHET LASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSR     KLN
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN

Query:  WTKLNWTGVEQDKCRQCW
        WTKLNWTGVEQDKC QCW
Subjt:  WTKLNWTGVEQDKCRQCW

A0A6J1JME7 uncharacterized protein LOC111485711 isoform X13.0e-5291.53Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN
        MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHET LASNPSLERSLLIEADEDDKL GSAREAKRRLDERLRTQ KSRKF     N
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLN

Query:  WTKLNWTGVEQDKCRQCW
        WTK NWTGVEQDKC QCW
Subjt:  WTKLNWTGVEQDKCRQCW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G15580.1 RING/U-box superfamily protein6.5e-1548.04Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQAL------TRRSVLCLYTSNHETHLASNPSLERSLLIEA---DEDDKLDGSAREAKRRLDERLRTQRKS
        MAGMLPGVECARRRR H      +S + A+ A       TRR    LYT+NHE+H A     ERS+  ++   D D+KLDG+A+EAK+RL++RLR   ++
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQAL------TRRSVLCLYTSNHETHLASNPSLERSLLIEA---DEDDKLDGSAREAKRRLDERLRTQRKS

Query:  RK
        R+
Subjt:  RK

AT2G15580.2 RING/U-box superfamily protein2.9e-1547.83Show/hide
Query:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQAL------TRRSVLCLYTSNHETHLASNPSLERSLLIEA---DEDDKLDGSAREAKRRLDERLR--TQR
        MAGMLPGVECARRRR H      +S + A+ A       TRR    LYT+NHE+H A     ERS+  ++   D D+KLDG+A+EAK+RL++RLR   + 
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPHIAAQAL------TRRSVLCLYTSNHETHLASNPSLERSLLIEA---DEDDKLDGSAREAKRRLDERLR--TQR

Query:  KSRKFNWTK-LNWTK
         S K   TK +NW+K
Subjt:  KSRKFNWTK-LNWTK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGGAATGCTTCCTGGTGTAGAGTGTGCTCGAAGAAGACGATGTCATCAAAACAAAGTATGGTCAGATTCACCGCACATCGCCGCTCAGGCCTTAACCAGGAGATC
TGTTCTCTGCTTGTACACCAGCAACCACGAAACGCACCTCGCTTCAAATCCATCTCTGGAAAGAAGCCTGTTAATTGAGGCGGATGAAGACGATAAACTGGATGGAAGTG
CGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGAACGCAGAGGAAATCCAGAAAGTTCAATTGGACAAAGTTGAATTGGACAAAGTTGAATTGGACAGGCGTGGAG
CAAGACAAGTGCCGCCAGTGCTGGTGA
mRNA sequenceShow/hide mRNA sequence
TCCTTCCAGTGCCGATGGAGTCAATGCAATAAATCTGTACTTAATCACTTCTCTCTCCGCCTGCTCAGCCAGAAAAGCCCTAGATCCGTGCAGAAATTTCAACTTTCAAG
GTTTCCAAAGTTTGTCCAATGGCTGGAATGCTTCCTGGTGTAGAGTGTGCTCGAAGAAGACGATGTCATCAAAACAAAGTATGGTCAGATTCACCGCACATCGCCGCTCA
GGCCTTAACCAGGAGATCTGTTCTCTGCTTGTACACCAGCAACCACGAAACGCACCTCGCTTCAAATCCATCTCTGGAAAGAAGCCTGTTAATTGAGGCGGATGAAGACG
ATAAACTGGATGGAAGTGCGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGAACGCAGAGGAAATCCAGAAAGTTCAATTGGACAAAGTTGAATTGGACAAAGTTG
AATTGGACAGGCGTGGAGCAAGACAAGTGCCGCCAGTGCTGGTGAAGAAGACGACTTCATTTCAGTGGATCTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATG
GTGCTTTGTTTTTTCTACACCGATGCCGGTTCGGATTATGTATATTTCAAATTACATCTCATAAACACGGCTTAAAATTCATAAAAACTCAAACTGTTCATGTTTGGATT
CATTAATTATTTATGAATCTATCAATTGTACCTTGGATGATGAAATGGATGATGAAACCCGCTAATTTAGAGAATGATCTCAAAGAATACTCTCTCAATTGGTGTGAGAC
TTTTTGGGGAACCCAAAGCAAAGTCATGAAAGCTTATGCTCGCTTGGACAATATCATACCATTGTGGAGAGTCGTGTTTATCTAACATGACAATATCATACCATTGTGGA
GAGTCGTGTTCATCTAACATGACAATATCATACCATTGTGGAG
Protein sequenceShow/hide protein sequence
MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETHLASNPSLERSLLIEADEDDKLDGSAREAKRRLDERLRTQRKSRKFNWTKLNWTKLNWTGVE
QDKCRQCW