CuGenDBv2

Gene ID	Carg09985
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cytochrome c oxidase assembly factor 6
Genome location	Carg_Chr10:2219450..2219945
RNA-Seq Expression	Carg09985
Synteny	Carg09985
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0045277 - respiratory chain complex IV (cellular component)
InterPro domains	IPR003213 - Cytochrome c oxidase, subunit VIb

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7023454.1 hypothetical protein SDJN02_14479, partial [Cucurbita argyrosperma subsp. argyrosperma]

7.8e-48

100

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Query:  MEGSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLCRKFCQNSRVQRLLDDKDSRRGPLMLPQPNTFKPTD
        MEGSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLCRKFCQNSRVQRLLDDKDSRRGPLMLPQPNTFKPTD
Subjt:  MEGSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLCRKFCQNSRVQRLLDDKDSRRGPLMLPQPNTFKPTD

XP_008443871.1 PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo]

8.6e-39

80.95

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Query:  GSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNT
        GSDEVH+DVL+ESRQACYKARD+FYACVEKESDKK TEIASVGLIYPAECK LRA++VKLC         RKFCQNSRVQRLLDDKD RRGPL+LPQP T
Subjt:  GSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNT

Query:  FKPTD
        FKPT+
Subjt:  FKPTD

XP_022134674.1 uncharacterized protein LOC111006886 [Momordica charantia]

5.0e-39

84.62

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Query:  GSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNT
        G DEVHSDVLA SRQACYKARD+FYACVEKESDKK TEIASVGLIYPAECK LRAEFVKLC         RKFCQNSRVQRLLDDKDSRRGPL LPQP T
Subjt:  GSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNT

Query:  FKPT
        FKPT
Subjt:  FKPT

XP_023529846.1 cytochrome c oxidase assembly factor 6 [Cucurbita pepo subsp. pepo]

2.5e-38

81.73

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Query:  GSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNT
        GS+EVH+DVLAE RQACYKARD+FYACVEKESDKK TEIASVGL+YPAECK  RAEFVKLC         RKFCQNSRVQRLLDDKDSRRGPL+LPQP T
Subjt:  GSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNT

Query:  FKPT
        FKPT
Subjt:  FKPT

XP_038878579.1 uncharacterized protein LOC120070767 [Benincasa hispida]

2.3e-39

83.81

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Query:  GSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNT
        G DEVHSDVLAESRQACYKARD+FYACVEKESDKK TEIASVGLIYPAECK LRA FVKLC         RKFCQNSRVQRLLDDKDSRRGPL+LPQP T
Subjt:  GSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNT

Query:  FKPTD
        FKPT+
Subjt:  FKPTD

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B9T5 uncharacterized protein LOC103487365 isoform X1

4.2e-39

80.95

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Query:  GSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNT
        GSDEVH+DVL+ESRQACYKARD+FYACVEKESDKK TEIASVGLIYPAECK LRA++VKLC         RKFCQNSRVQRLLDDKD RRGPL+LPQP T
Subjt:  GSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNT

Query:  FKPTD
        FKPT+
Subjt:  FKPTD

A0A5A7SVN2 Cytochrome c oxidase assembly factor 6 isoform X3

4.2e-39

80.95

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Query:  GSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNT
        GSDEVH+DVL+ESRQACYKARD+FYACVEKESDKK TEIASVGLIYPAECK LRA++VKLC         RKFCQNSRVQRLLDDKD RRGPL+LPQP T
Subjt:  GSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNT

Query:  FKPTD
        FKPT+
Subjt:  FKPTD

A0A6J1BZF0 uncharacterized protein LOC111006886

2.4e-39

84.62

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Query:  GSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNT
        G DEVHSDVLA SRQACYKARD+FYACVEKESDKK TEIASVGLIYPAECK LRAEFVKLC         RKFCQNSRVQRLLDDKDSRRGPL LPQP T
Subjt:  GSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNT

Query:  FKPT
        FKPT
Subjt:  FKPT

A0A6J1EDW1 cytochrome c oxidase assembly factor 6

1.2e-38

81.73

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Query:  GSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNT
        GS+EVH+DVLAE RQACYKARD+FYACVEKESDKK TEIASVGL+YPAECK  RAEFVKLC         RKFCQNSRVQRLLDDKDSRRGPL+LPQP T
Subjt:  GSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNT

Query:  FKPT
        FKPT
Subjt:  FKPT

A0A6J1I7I2 cytochrome c oxidase assembly factor 6

1.2e-38

81.73

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Query:  GSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNT
        GS+EVH+DVLAE RQACYKARD+FYACVEKESDKK TEIASVGL+YPAECK  RAEFVKLC         RKFCQNSRVQRLLDDKDSRRGPL+LPQP T
Subjt:  GSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNT

Query:  FKPT
        FKPT
Subjt:  FKPT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G58005.1 Cytochrome c oxidase, subunit Vib family protein

6.0e-30

59.8

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Query:  DEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNTFK
        ++VH DVL ++R ACYKARD+FYAC+EKES KK TEIA+VGL+YP EC   R +FV  C         R++C+N RVQRLLDD D R+GP+ LPQP TFK
Subjt:  DEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNTFK

Query:  PT
        P+
Subjt:  PT

AT5G58005.2 Cytochrome c oxidase, subunit Vib family protein

6.0e-30

59.8

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Query:  DEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNTFK
        ++VH DVL ++R ACYKARD+FYAC+EKES KK TEIA+VGL+YP EC   R +FV  C         R++C+N RVQRLLDD D R+GP+ LPQP TFK
Subjt:  DEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLC---------RKFCQNSRVQRLLDDKDSRRGPLMLPQPNTFK

Query:  PT
        P+
Subjt:  PT

Sequences

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CDS sequence

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ATGGAGGGCTCAGATGAAGTTCATAGCGACGTTCTAGCGGAATCTAGACAAGCTTGCTACAAGGCTCGCGATAGTTTTTATGCATGTGTGGAGAAGGAATCGGACAAAAA
ATCCACTGAAATAGCTTCTGTTGGCCTAATTTACCCTGCCGAGTGTAAAATTTTGAGGGCCGAATTTGTCAAGCTTTGCAGGAAGTTTTGTCAGAACAGTAGGGTTCAAA
GACTCCTAGATGACAAAGATTCAAGGAGAGGTCCCTTGATGCTCCCGCAACCTAATACTTTTAAGCCTACTGATTAA

mRNA sequence

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Protein sequence

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MEGSDEVHSDVLAESRQACYKARDSFYACVEKESDKKSTEIASVGLIYPAECKILRAEFVKLCRKFCQNSRVQRLLDDKDSRRGPLMLPQPNTFKPTD

Carg09985 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome