; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg10006 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg10006
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCarg_Chr10:2116028..2116645
RNA-Seq ExpressionCarg10006
SyntenyCarg10006
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7023434.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-62100Show/hide
Query:  MRKSKGSGEIRSSRERRRRIQMICTNTTTSGNTMPQVLRPWGRSPPASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLE
        MRKSKGSGEIRSSRERRRRIQMICTNTTTSGNTMPQVLRPWGRSPPASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLE
Subjt:  MRKSKGSGEIRSSRERRRRIQMICTNTTTSGNTMPQVLRPWGRSPPASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLE

Query:  RDTVLWNTENPMSIEVKLKHKDKSVKR
        RDTVLWNTENPMSIEVKLKHKDKSVKR
Subjt:  RDTVLWNTENPMSIEVKLKHKDKSVKR

XP_004152852.1 pentatricopeptide repeat-containing protein At4g30700 [Cucumis sativus]9.8e-1983.87Show/hide
Query:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT
        ASR EDER+GVLL AHSIV G ASNLFVG  IVDLY KFTRAELARKVFDV+ ERDTVLWNT
Subjt:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT

XP_016902152.1 PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Cucumis melo]9.8e-1983.87Show/hide
Query:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT
        ASR EDER+GVLL AHSIV G ASNLFVG  IVDLY KFTRAELARKVFDV+ ERDTVLWNT
Subjt:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT

XP_038889951.1 pentatricopeptide repeat-containing protein At4g30700-like isoform X1 [Benincasa hispida]2.0e-1985.48Show/hide
Query:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT
        ASRFEDER+GVLL AHSIV G ASNLFVG  IVDLY KFTRAELARKVFDV+ ERDTVLWNT
Subjt:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT

XP_038889958.1 pentatricopeptide repeat-containing protein At4g30700-like isoform X2 [Benincasa hispida]2.0e-1985.48Show/hide
Query:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT
        ASRFEDER+GVLL AHSIV G ASNLFVG  IVDLY KFTRAELARKVFDV+ ERDTVLWNT
Subjt:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT

TrEMBL top hitse value%identityAlignment
A0A0A0LMK7 DYW_deaminase domain-containing protein4.7e-1983.87Show/hide
Query:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT
        ASR EDER+GVLL AHSIV G ASNLFVG  IVDLY KFTRAELARKVFDV+ ERDTVLWNT
Subjt:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT

A0A1S4E1Q1 pentatricopeptide repeat-containing protein At4g307004.7e-1983.87Show/hide
Query:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT
        ASR EDER+GVLL AHSIV G ASNLFVG  IVDLY KFTRAELARKVFDV+ ERDTVLWNT
Subjt:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT

A0A5A7U078 Pentatricopeptide repeat-containing protein4.7e-1983.87Show/hide
Query:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT
        ASR EDER+GVLL AHSIV G ASNLFVG  IVDLY KFTRAELARKVFDV+ ERDTVLWNT
Subjt:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT

A0A6J1C0W7 pentatricopeptide repeat-containing protein At4g307001.1e-1882.26Show/hide
Query:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT
        ASRFEDERIG LL AHSIV G ASNLFVG   VDLY KFTRA+LARKVFDV+ ERDTVLWNT
Subjt:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT

A0A6J1EDA0 pentatricopeptide repeat-containing protein At4g307001.8e-1880.65Show/hide
Query:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT
        AS+FEDER+GVLL AHSIV G ASNLFVG  IVDLY KFTRA+LARKVFD + ERDTVLWNT
Subjt:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT

SwissProt top hitse value%identityAlignment
O81767 Pentatricopeptide repeat-containing protein At4g339904.2e-0441.51Show/hide
Query:  GVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT
        GV + ++SI  G  S LFV   ++DLY +F R    +KVFD +  RD + WN+
Subjt:  GVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT

Q9LR72 Putative pentatricopeptide repeat-containing protein At1g035107.1e-0439.62Show/hide
Query:  IGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWN
        +G  + AHS+     SN FVG  ++D+Y K      ARK+FD + +R+ V+WN
Subjt:  IGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWN

Q9SCT2 Pentatricopeptide repeat-containing protein At3g504205.4e-0444.83Show/hide
Query:  EDERI--GVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLW
        E ER   G LL       G   ++FVG  ++ +Y K   AE A+KVFDV+ ERD VLW
Subjt:  EDERI--GVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLW

Q9SS83 Pentatricopeptide repeat-containing protein At3g09040, mitochondrial2.4e-0439.62Show/hide
Query:  IGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWN
        +G+++ A +I  G ASN++VG  +V +Y K  + E A KVF+ + E++ V WN
Subjt:  IGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWN

Q9SUH6 Pentatricopeptide repeat-containing protein At4g307001.5e-0950Show/hide
Query:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT
        AS F D+R G ++   ++V G  S L +G  IV +Y KF R E ARKVFD + E+DT+LWNT
Subjt:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT

Arabidopsis top hitse value%identityAlignment
AT1G03510.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.0e-0539.62Show/hide
Query:  IGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWN
        +G  + AHS+     SN FVG  ++D+Y K      ARK+FD + +R+ V+WN
Subjt:  IGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWN

AT3G09040.1 Pentatricopeptide repeat (PPR) superfamily protein1.7e-0539.62Show/hide
Query:  IGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWN
        +G+++ A +I  G ASN++VG  +V +Y K  + E A KVF+ + E++ V WN
Subjt:  IGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWN

AT3G50420.1 Pentatricopeptide repeat (PPR) superfamily protein3.9e-0544.83Show/hide
Query:  EDERI--GVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLW
        E ER   G LL       G   ++FVG  ++ +Y K   AE A+KVFDV+ ERD VLW
Subjt:  EDERI--GVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLW

AT4G30700.1 Pentatricopeptide repeat (PPR) superfamily protein1.0e-1050Show/hide
Query:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT
        AS F D+R G ++   ++V G  S L +G  IV +Y KF R E ARKVFD + E+DT+LWNT
Subjt:  ASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT

AT4G33990.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.0e-0541.51Show/hide
Query:  GVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT
        GV + ++SI  G  S LFV   ++DLY +F R    +KVFD +  RD + WN+
Subjt:  GVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAAATCGAAGGGAAGCGGCGAGATTAGAAGCTCCCGGGAGCGCCGTAGACGCATACAGATGATATGCACAAACACGACCACGTCTGGAAATACGATGCCACAAGT
TCTTCGACCTTGGGGCCGTTCGCCACCTGCTTCGAGGTTTGAGGATGAGAGGATTGGCGTCTTGTTGCAAGCGCATTCCATTGTTGGTGGGGCGGCGTCAAATTTGTTTG
TTGGGTATGTAATCGTTGATTTGTACATCAAATTTACGCGCGCCGAGTTGGCGCGCAAGGTGTTTGATGTTGTGCTTGAGAGGGATACGGTTCTTTGGAACACAGAGAAC
CCGATGTCTATTGAAGTCAAGCTGAAGCACAAGGACAAGAGTGTCAAAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGAAATCGAAGGGAAGCGGCGAGATTAGAAGCTCCCGGGAGCGCCGTAGACGCATACAGATGATATGCACAAACACGACCACGTCTGGAAATACGATGCCACAAGT
TCTTCGACCTTGGGGCCGTTCGCCACCTGCTTCGAGGTTTGAGGATGAGAGGATTGGCGTCTTGTTGCAAGCGCATTCCATTGTTGGTGGGGCGGCGTCAAATTTGTTTG
TTGGGTATGTAATCGTTGATTTGTACATCAAATTTACGCGCGCCGAGTTGGCGCGCAAGGTGTTTGATGTTGTGCTTGAGAGGGATACGGTTCTTTGGAACACAGAGAAC
CCGATGTCTATTGAAGTCAAGCTGAAGCACAAGGACAAGAGTGTCAAAAGATAGGCTTGATAAGAGCCAAATAGGGCCTCGGGACTTAACCTCAAAAGTCGGAGTTTCAG
TCTGAATTTTGGCGTATGATCTTGGC
Protein sequenceShow/hide protein sequence
MRKSKGSGEIRSSRERRRRIQMICTNTTTSGNTMPQVLRPWGRSPPASRFEDERIGVLLQAHSIVGGAASNLFVGYVIVDLYIKFTRAELARKVFDVVLERDTVLWNTEN
PMSIEVKLKHKDKSVKR