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Carg10145 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg10145
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionsmall EDRK-rich factor 2-like
Genome locationCarg_Chr17:509794..512144
RNA-Seq ExpressionCarg10145
SyntenyCarg10145
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR007513 - Uncharacterised protein family SERF, N-terminal
IPR040211 - Small EDRK-rich factor 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033303.1 small EDRK-rich factor 2 [Cucumis melo var. makuwa]5.4e-2092.75Show/hide
Query:  KSLRGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
        +SLRGNQREKDRERAQAR GGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAAS GNSSGGK+S KK
Subjt:  KSLRGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
KAG7013429.1 hypothetical protein SDJN02_23595, partial [Cucurbita argyrosperma subsp. argyrosperma]5.2e-79100Show/hide
Query:  RRTGVSLGDGGGAGEVTGARGHSLALEEAVESVGGVGLDGVREEAESVRQKRSAVGAGGACVVEGGLKGFVAGLAAGHAPVRAVDGGGWEEEEEEEEEEG
        RRTGVSLGDGGGAGEVTGARGHSLALEEAVESVGGVGLDGVREEAESVRQKRSAVGAGGACVVEGGLKGFVAGLAAGHAPVRAVDGGGWEEEEEEEEEEG
Subjt:  RRTGVSLGDGGGAGEVTGARGHSLALEEAVESVGGVGLDGVREEAESVRQKRSAVGAGGACVVEGGLKGFVAGLAAGHAPVRAVDGGGWEEEEEEEEEEG

Query:  VGENKSLRGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
        VGENKSLRGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
Subjt:  VGENKSLRGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
TYK21602.1 small EDRK-rich factor 2 [Cucumis melo var. makuwa]9.2e-2094.12Show/hide
Query:  SLRGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
        SLRGNQREKDRERAQAR GGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAAS GNSSGGK+S KK
Subjt:  SLRGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
XP_008457241.1 PREDICTED: small EDRK-rich factor 2 [Cucumis melo]1.0e-1893.94Show/hide
Query:  RGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
        RGNQREKDRERAQAR GGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAAS GNSSGGK+S KK
Subjt:  RGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
XP_022959425.1 small EDRK-rich factor 2-like [Cucurbita moschata]6.4e-21100Show/hide
Query:  RGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
        RGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
Subjt:  RGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
TrEMBL top hitse value%identityAlignment
A0A1S3C551 small EDRK-rich factor 25.0e-1993.94Show/hide
Query:  RGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
        RGNQREKDRERAQAR GGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAAS GNSSGGK+S KK
Subjt:  RGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
A0A5A7SS85 Small EDRK-rich factor 22.6e-2092.75Show/hide
Query:  KSLRGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
        +SLRGNQREKDRERAQAR GGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAAS GNSSGGK+S KK
Subjt:  KSLRGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
A0A5D3DDD9 Small EDRK-rich factor 24.5e-2094.12Show/hide
Query:  SLRGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
        SLRGNQREKDRERAQAR GGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAAS GNSSGGK+S KK
Subjt:  SLRGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
A0A6J1H688 small EDRK-rich factor 2-like3.1e-21100Show/hide
Query:  RGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
        RGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
Subjt:  RGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
A0A6J1KZW7 small EDRK-rich factor 2-like3.1e-21100Show/hide
Query:  RGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
        RGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
Subjt:  RGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24100.1 Uncharacterised protein family SERF3.5e-1783.33Show/hide
Query:  RGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGG
        RG+QRE+DRERA ARTGGKGK KDDGLTPEQRRERDAKALQEK AKKAAQAA+  +S GG
Subjt:  RGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGG
AT4G13615.1 Uncharacterised protein family SERF6.6e-1676.47Show/hide
Query:  RGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQA--ASEGNSSGGKSSAKK
        RG+QRE+DRERA AR GGKGK  DDGLTPEQRRERD KALQEKAAKKAAQA  AS G ++GGK +A K
Subjt:  RGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQA--ASEGNSSGGKSSAKK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGACGGACTGGGGTCAGTCTGGGCGATGGTGGCGGAGCCGGCGAAGTCACAGGAGCCAGGGGCCATAGCCTTGCGCTGGAAGAAGCTGTTGAAAGCGTAGGAGGCGTGGG
CCTGGATGGTGTTCGGGAGGAAGCAGAGTCCGTTCGACAGAAGCGGAGTGCAGTCGGCGCCGGTGGCGCATGCGTAGTCGAGGGCGGTTTGAAGGGCTTCGTAGCTGGCC
TCGCTGCGGGCCACGCACCAGTACGCGCCGTCGACGGCGGAGGTTGGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAAGGAGTGGGAGAGAACAAATCTCTACGAGGAAAC
CAAAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGCACCGGCGGCAAGGGTAAAACCAAGGACGATGGTTTGACCCCCGAGCAGCGCCGCGAAAGAGATGCTAAGGCGCT
ACAAGAAAAGGCAGCAAAGAAGGCGGCTCAGGCGGCATCGGAAGGTAATTCATCCGGAGGTAAAAGTAGCGCTAAAAAGTAG
mRNA sequenceShow/hide mRNA sequence
AGACGGACTGGGGTCAGTCTGGGCGATGGTGGCGGAGCCGGCGAAGTCACAGGAGCCAGGGGCCATAGCCTTGCGCTGGAAGAAGCTGTTGAAAGCGTAGGAGGCGTGGG
CCTGGATGGTGTTCGGGAGGAAGCAGAGTCCGTTCGACAGAAGCGGAGTGCAGTCGGCGCCGGTGGCGCATGCGTAGTCGAGGGCGGTTTGAAGGGCTTCGTAGCTGGCC
TCGCTGCGGGCCACGCACCAGTACGCGCCGTCGACGGCGGAGGTTGGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAAGGAGTGGGAGAGAACAAATCTCTACGAGGAAAC
CAAAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGCACCGGCGGCAAGGGTAAAACCAAGGACGATGGTTTGACCCCCGAGCAGCGCCGCGAAAGAGATGCTAAGGCGCT
ACAAGAAAAGGCAGCAAAGAAGGCGGCTCAGGCGGCATCGGAAGGTAATTCATCCGGAGGTAAAAGTAGCGCTAAAAAGTAGATGGTCCTGGATTTAGAATCGTGAACAC
TATGATCTCGTGGTTCTTAGACTGTTTGATATTGGAGAAATAAATATTTGTATGTTTCAGTAATGTGAATGGATATATCTCTTATGCTGTCAACGTTAACTGTTGATGAT
TGTTTTCCATGATCTTAGTACTCTTGATATGTTGTGTTGAGGTAATTATGCTGTTAATGCGGATTTCGTGAAATTTGAATCTAGATGAAAAGTTCTTCTATTATGATCTG
AACACATAGCTCACCAGGAATTCATCTCATAGGGTCACATGCCAGTATTTGTCTAGGGATAATAGCAAATAGTTATTGTCCTATCATTGAGTAGGAAATTTCTATGGTCA
ACATTTTAGTTCTTGATCCACAAGAGGGAGCCATTAAAATGGGGCCAGAACTCACATTTCTTCCCAAGTTCAACACCTTTAAAAATCCTCTTGTTCCTTCCGAACTTTGT
GTACCACAAAATAGCCAAGAAAAAGACCAGCCATGTTACAACACTTCAGGTTCTAAAACCTATGTACATGTTCTTAGTGACCAAGATTCTATGCTCGTATTTACTACCAA
AATCCTATGCCACGTTGCTTTAGGTTCTTAAGGGGCACCTTCCTTCACAACTCATGAACCAGAGAGGACATAATGCTTGTGGGACAAATTTTCTATGCCCAACCTGCCAT
TCTCGCACATTTTCTGGAAGACCTCCCAATAAACCAAATGAGAACCACCCGTTTCGTCTACTCTTTTCG
Protein sequenceShow/hide protein sequence
RRTGVSLGDGGGAGEVTGARGHSLALEEAVESVGGVGLDGVREEAESVRQKRSAVGAGGACVVEGGLKGFVAGLAAGHAPVRAVDGGGWEEEEEEEEEEGVGENKSLRGN
QREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK