CuGenDBv2

Gene ID	Carg10220
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	LysM domain-containing protein
Genome location	Carg_Chr17:55611..55865
RNA-Seq Expression	Carg10220
Synteny	Carg10220
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR018392 - LysM domain IPR036779 - LysM domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6574776.1 hypothetical protein SDJN03_25415, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-37

98.81

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Query:  MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR
        MASSTSCCSVFI MALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR
Subjt:  MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR

KAG7013356.1 hypothetical protein SDJN02_23520, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.8e-38

100

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Query:  MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR
        MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR
Subjt:  MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR

KGN46208.1 hypothetical protein Csa_005039 [Cucumis sativus]

2.0e-20

75.32

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Query:  SVFI-FMALML-LASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSL-NSRKLL
        SVF+  MAL++ +ASA+S PCDDIY+V+EGE+LH+ISAKC DPFIVD NP IQDSDDVFPGLLI+ITP+L NSRKLL
Subjt:  SVFI-FMALML-LASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSL-NSRKLL

XP_022959284.1 uncharacterized protein LOC111460313 [Cucurbita moschata]

2.8e-38

100

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Query:  MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR
        MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR
Subjt:  MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR

XP_023006696.1 uncharacterized protein LOC111499354 [Cucurbita maxima]

7.6e-36

96.43

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Query:  MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR
        MASS SC SVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKL FR
Subjt:  MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K9P3 LysM domain-containing protein

9.8e-21

75.32

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Query:  SVFI-FMALML-LASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSL-NSRKLL
        SVF+  MAL++ +ASA+S PCDDIY+V+EGE+LH+ISAKC DPFIVD NP IQDSDDVFPGLLI+ITP+L NSRKLL
Subjt:  SVFI-FMALML-LASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSL-NSRKLL

A0A2I4FG64 uncharacterized protein LOC108998528

9.5e-16

73.68

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Query:  PCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLL
        PCD+IY+VREGE+LH+IS KCDDPFIV+ NP I D DDVFPGL+IKI    NSRKLL
Subjt:  PCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLL

A0A5D3DLK6 Uncharacterized protein

1.7e-20

76.62

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Query:  SVFI-FMAL-MLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSL-NSRKLL
        SVFI  MAL M++ASA+S PC+DIY+V+EGE+LH+ISAKC DPFIVD NP IQDSDDVFPGLLI+ITP+L NSRKLL
Subjt:  SVFI-FMAL-MLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSL-NSRKLL

A0A6J1H7L7 uncharacterized protein LOC111460313

1.4e-38

100

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Query:  MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR
        MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR
Subjt:  MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR

A0A6J1KYG6 uncharacterized protein LOC111499354

3.7e-36

96.43

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Query:  MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR
        MASS SC SVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKL FR
Subjt:  MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G52790.1 peptidoglycan-binding LysM domain-containing protein

7.9e-15

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Query:  CDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSL
        CD+IY V+EGE+L +IS KC DP+IV+ NP I D DD+FPGLLI+ITPSL
Subjt:  CDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSL

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein

1.8e-14

68.09

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Query:  PCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKI
        PC+++Y+V EG++LHSIS KC DPFIV+ NP I D DDVFPGLLIK+
Subjt:  PCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein

1.4e-16

46.59

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Query:  CSVFIFMALMLLASAQSG--------------PCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKL
        CS  + ++L+LL S +                PC++IY+V EGE+LH+I  KC DPFIV+ NP I D DDVFPGL++KI P   +RKL
Subjt:  CSVFIFMALMLLASAQSG--------------PCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKL

Sequences

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CDS sequence

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ATGGCTTCCTCAACATCCTGCTGCTCTGTTTTCATTTTCATGGCGCTCATGCTCCTCGCCTCTGCGCAATCCGGTCCCTGCGACGACATCTACCTCGTCAGAGAAGGCGA
GTCGCTGCACTCTATCAGCGCCAAGTGCGACGATCCTTTCATAGTCGACTACAATCCGCAGATTCAGGATTCCGATGATGTCTTTCCAGGACTACTTATCAAAATTACGC
CATCTCTTAACTCCAGGAAGCTCTTATTCAGGTAG

mRNA sequence

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Protein sequence

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MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR

Carg10220 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome