CuGenDBv2

Gene ID	Carg10276
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	mediator of RNA polymerase II transcription subunit 30
Genome location	Carg_Chr10:193437..195193
RNA-Seq Expression	Carg10276
Synteny	Carg10276
Gene Ontology terms	GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR034568 - Mediator of RNA polymerase II transcription subunit 30

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004138044.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus]

1.8e-91

93.94

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Query:  MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG
        MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT TSGLTIASP+ PSSHS NGVVNGDASSEST+HHTD+S GG
Subjt:  MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV

XP_008464424.1 PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]

3.9e-91

93.94

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Query:  MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG
        MEEK T VL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT TSGLTIASPN PSSHS NGVVNGDASSEST+HHTD+SSGG
Subjt:  MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+ESGTS HASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV

XP_022134927.1 mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]

4.2e-85

87.88

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Query:  MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG
        ME+KPT++L+LPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTA   TS L+IASPN PS HSTNGVVNGDASSESTNHH DTSSGG
Subjt:  MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV
        G+GSGGALEEARVRY NSVLALRAILAAIP+SQ AKA+ESGTSGHASPADQSEIDKLEQHL NLRKEL+ KNLH+KLLIDQLR+LVAD+STWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV

XP_022921424.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata]

5.7e-98

100

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Query:  MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG
        MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG
Subjt:  MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV

XP_038879540.1 mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida]

3.1e-88

92.42

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Query:  MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG
        MEEKPTNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSST TT TSGL IASPN PSSHS NGVVNGDASSEST+HHTD+SSGG
Subjt:  MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKA A+ESGTSG  SPADQSEIDKLEQHLS+LRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LNW4 Uncharacterized protein

8.6e-92

93.94

Show/hide

Query:  MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG
        MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT TSGLTIASP+ PSSHS NGVVNGDASSEST+HHTD+S GG
Subjt:  MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV

A0A1S3CMZ7 mediator of RNA polymerase II transcription subunit 30

1.9e-91

93.94

Show/hide

Query:  MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG
        MEEK T VL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT TSGLTIASPN PSSHS NGVVNGDASSEST+HHTD+SSGG
Subjt:  MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+ESGTS HASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV

A0A5A7USU3 Mediator of RNA polymerase II transcription subunit 30

1.9e-91

93.94

Show/hide

Query:  MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG
        MEEK T VL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT TSGLTIASPN PSSHS NGVVNGDASSEST+HHTD+SSGG
Subjt:  MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+ESGTS HASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV

A0A6J1E0F5 mediator of RNA polymerase II transcription subunit 30

2.7e-98

100

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Query:  MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG
        MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG
Subjt:  MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV

A0A6J1JFZ2 mediator of RNA polymerase II transcription subunit 30

2.7e-98

100

Show/hide

Query:  MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG
        MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG
Subjt:  MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV

SwissProt top hits

e value

%identity

Alignment

Q9FMV4 Mediator of RNA polymerase II transcription subunit 30

1.1e-43

56.32

Show/hide

Query:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST--TSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASS-ESTNHHTDTSSGGGSGSGG--AL
        TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST  T S+A TTT              + + +V+ DA++ + T+HH++++ GGG G  G   L
Subjt:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST--TSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASS-ESTNHHTDTSSGGGSGSGG--AL

Query:  EEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV
        +EA +RYKNSV +LRA+LAAIPNSQKAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LREL+AD+STWQSPCSV
Subjt:  EEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV

Arabidopsis top hits

e value

%identity

Alignment

AT5G63480.1 unknown protein

7.8e-45

56.32

Show/hide

Query:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST--TSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASS-ESTNHHTDTSSGGGSGSGG--AL
        TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST  T S+A TTT              + + +V+ DA++ + T+HH++++ GGG G  G   L
Subjt:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST--TSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASS-ESTNHHTDTSSGGGSGSGG--AL

Query:  EEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV
        +EA +RYKNSV +LRA+LAAIPNSQKAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LREL+AD+STWQSPCSV
Subjt:  EEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAAGAGAAACCCACTAATGTTTTGTCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAGGAAACGATAGAATCCGCATTCCAGATCCT
ATACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACAACGACTACTTCTGGTTTAACAATTGCCAGCCCAAATGCTCCATCTT
CGCATTCCACTAATGGAGTTGTAAACGGCGATGCAAGTTCGGAAAGCACAAACCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAG
GCCCGTGTTCGCTACAAGAATTCAGTACTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAAGCACATGAATCGGGTACAAGCGGTCATGCATC
GCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTATGGTTAAGAACTTGCATATAAAGCTTCTGATAGATCAACTACGAG
AACTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGA

mRNA sequence

Show/hide mRNA sequence

TGTGAACATCAGAAGTGTGATTGAAAGTCGGAATTGGGATTTTGGTTGATTCCGAAGGCTCTCTCTACGAATTCGGTGGATTTTCGGTTGGCGTAGCAGCACAAAAGCTT
CTGTTTTTTGTTCTGGAAAATTTTGATGGAAGAGAAACCCACTAATGTTTTGTCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAGGAAA
CGATAGAATCCGCATTCCAGATCCTATACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACAACGACTACTTCTGGTTTAACA
ATTGCCAGCCCAAATGCTCCATCTTCGCATTCCACTAATGGAGTTGTAAACGGCGATGCAAGTTCGGAAAGCACAAACCATCACACCGACACCAGCAGTGGCGGAGGCAG
CGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAAGAATTCAGTACTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAAGCACATG
AATCGGGTACAAGCGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTATGGTTAAGAACTTGCATATA
AAGCTTCTGATAGATCAACTACGAGAACTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGAAAAACACGACTAGCCTTGAGTCTCCTCACTAATCTAGC
GGTCGTAATTTGAGAATGTCTTGCTCTGTTTCTTTATAAGATGAGCTGTTATTAGAACGTTTCTTTATATATCTCTTCAATGAAACTGGGATTATAAATCTGCCATTGGC
ACTAGATTGTTAATATAACTTAAGGCTCTGAGATAAATCAAGTACCGGGAATAAAAGGTTCAATATTTCCATG

Protein sequence

Show/hide protein sequence

MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEE
ARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV

Carg10276 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome