; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg10280 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg10280
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein indeterminate-domain 16-like
Genome locationCarg_Chr10:211520..212008
RNA-Seq ExpressionCarg10280
SyntenyCarg10280
Gene Ontology termsGO:0009630 - gravitropism (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR039288 - Zinc finger protein SHOOT GRAVITROPISM 5-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589384.1 Zinc finger protein SHOOT GRAVITROPISM 5, partial [Cucurbita argyrosperma subsp. sororia]4.4e-80100Show/hide
Query:  MEDEDQKELQLLPTPHTIASSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERV
        MEDEDQKELQLLPTPHTIASSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERV
Subjt:  MEDEDQKELQLLPTPHTIASSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERV

Query:  RELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
        RELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Subjt:  RELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

XP_022921773.1 protein indeterminate-domain 16-like [Cucurbita moschata]4.5e-7795.27Show/hide
Query:  MEDEDQKELQLLPTPHTIAS-------SSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAME
        MEDEDQKELQLLPTPHTIAS       SSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAME
Subjt:  MEDEDQKELQLLPTPHTIAS-------SSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAME

Query:  KAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
        KAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR S
Subjt:  KAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

XP_022987095.1 protein indeterminate-domain 16-like [Cucurbita maxima]2.5e-7592.94Show/hide
Query:  MEDEDQKELQLLPTPHTIAS--------SSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAM
        MEDEDQKELQLLPTPHTI S        SSRPSASSMRFRSDPYE GPGSLDLQLSISVRPIRPTAECVFKYE+VMKPEAASCVEALKWQAAEQIRLAAM
Subjt:  MEDEDQKELQLLPTPHTIAS--------SSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAM

Query:  EKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
        EKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR S
Subjt:  EKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

XP_023516632.1 protein indeterminate-domain 16-like isoform X1 [Cucurbita pepo subsp. pepo]4.5e-7795.24Show/hide
Query:  MEDEDQKELQLLPTPHTIAS-------SSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAME
        MEDEDQKELQLLPTPHTIAS       SSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAA CVEALKWQAAEQIRLAAME
Subjt:  MEDEDQKELQLLPTPHTIAS-------SSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAME

Query:  KAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP
        KAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP
Subjt:  KAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP

XP_023516633.1 protein indeterminate-domain 16-like isoform X2 [Cucurbita pepo subsp. pepo]1.2e-7496.27Show/hide
Query:  MEDEDQKELQLLPTPHTIASSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERV
        MEDEDQKELQLLPTPHTIASS     SSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAA CVEALKWQAAEQIRLAAMEKAYAERV
Subjt:  MEDEDQKELQLLPTPHTIASSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERV

Query:  RELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP
        RELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP
Subjt:  RELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP

TrEMBL top hitse value%identityAlignment
A0A1S3CN02 protein indeterminate-domain 167.5e-7088.3Show/hide
Query:  MEDEDQKELQLLPTPHTIAS-----SSRPSASSMRFRSDPYEAGP-GSLDLQLSISVRPIRPT---AECVFKYEEVMKPEAASCVEALKWQAAEQIRLAA
        MEDEDQKELQLLPTPH+IAS     SSRPS SS+RFRSDP+EAG  GS+DLQLSIS+RPIRP     EC+FKYEEVMKPEAASCVEALKWQAAEQIRLAA
Subjt:  MEDEDQKELQLLPTPHTIAS-----SSRPSASSMRFRSDPYEAGP-GSLDLQLSISVRPIRPT---AECVFKYEEVMKPEAASCVEALKWQAAEQIRLAA

Query:  MEKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
        MEKAYAERVRELTKREIELAQTEF RARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Subjt:  MEKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

A0A5A7UWD1 Protein indeterminate-domain 162.2e-6987.72Show/hide
Query:  MEDEDQKELQLLPTPHTIAS-----SSRPSASSMRFRSDPYEAGP-GSLDLQLSISVRPIRPT---AECVFKYEEVMKPEAASCVEALKWQAAEQIRLAA
        MEDEDQKELQLLPTPH+IAS     SSRPS SS+RFRSDP+EAG  GS+DLQLSIS+RPIRP     EC+FKYEEVMKPEAASCVEALKWQAAEQIRLAA
Subjt:  MEDEDQKELQLLPTPHTIAS-----SSRPSASSMRFRSDPYEAGP-GSLDLQLSISVRPIRPT---AECVFKYEEVMKPEAASCVEALKWQAAEQIRLAA

Query:  MEKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
        +EKAYAERVRELTKREIELAQTEF RARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Subjt:  MEKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

A0A5D3BFD1 Protein indeterminate-domain 167.5e-7088.3Show/hide
Query:  MEDEDQKELQLLPTPHTIAS-----SSRPSASSMRFRSDPYEAGP-GSLDLQLSISVRPIRPT---AECVFKYEEVMKPEAASCVEALKWQAAEQIRLAA
        MEDEDQKELQLLPTPH+IAS     SSRPS SS+RFRSDP+EAG  GS+DLQLSIS+RPIRP     EC+FKYEEVMKPEAASCVEALKWQAAEQIRLAA
Subjt:  MEDEDQKELQLLPTPHTIAS-----SSRPSASSMRFRSDPYEAGP-GSLDLQLSISVRPIRPT---AECVFKYEEVMKPEAASCVEALKWQAAEQIRLAA

Query:  MEKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
        MEKAYAERVRELTKREIELAQTEF RARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Subjt:  MEKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

A0A6J1E4S8 protein indeterminate-domain 16-like2.2e-7795.27Show/hide
Query:  MEDEDQKELQLLPTPHTIAS-------SSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAME
        MEDEDQKELQLLPTPHTIAS       SSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAME
Subjt:  MEDEDQKELQLLPTPHTIAS-------SSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAME

Query:  KAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
        KAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR S
Subjt:  KAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

A0A6J1JFV3 protein indeterminate-domain 16-like1.2e-7592.94Show/hide
Query:  MEDEDQKELQLLPTPHTIAS--------SSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAM
        MEDEDQKELQLLPTPHTI S        SSRPSASSMRFRSDPYE GPGSLDLQLSISVRPIRPTAECVFKYE+VMKPEAASCVEALKWQAAEQIRLAAM
Subjt:  MEDEDQKELQLLPTPHTIAS--------SSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAM

Query:  EKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
        EKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR S
Subjt:  EKAYAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

SwissProt top hitse value%identityAlignment
F4IPE3 Zinc finger protein SHOOT GRAVITROPISM 53.5e-0829.22Show/hide
Query:  ELQLLPTPHTIASSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQI-RLAAMEKAYAERVRELTKR
        ELQLLP       +       ++  S  +     + +L LSI+            + +E+M              A+EQI ++A  EKAYAE  +   KR
Subjt:  ELQLLPTPHTIASSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQI-RLAAMEKAYAERVRELTKR

Query:  EIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR
        + E+A+ EF  A+++ ++A+ E+E+A+ +KE++ +++ ST M++TCQ+C+ +F+
Subjt:  EIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR

Q9C9X7 Protein indeterminate-domain 142.5e-0642.86Show/hide
Query:  ERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR
        E  R  TKR+IE+A+ EF  A+++ + AR E+ KA   +E A+R++ +T M+ITC +C+Q F+
Subjt:  ERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR

Q9FRH4 Protein indeterminate-domain 161.3e-0732.89Show/hide
Query:  LQLLPTPHTIASSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREI
        L LL  P      S   A      S P+E    SL+LQLSI +      A    K E  +  E A+                  E   AE  R+  KR+I
Subjt:  LQLLPTPHTIASSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREI

Query:  ELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR
        E+A+ +F +A+++ E A+ E+EKA  ++E A +++++T MEITC SC+Q F+
Subjt:  ELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR

Arabidopsis top hitse value%identityAlignment
AT1G25250.1 indeterminate(ID)-domain 169.6e-0932.89Show/hide
Query:  LQLLPTPHTIASSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREI
        L LL  P      S   A      S P+E    SL+LQLSI +      A    K E  +  E A+                  E   AE  R+  KR+I
Subjt:  LQLLPTPHTIASSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREI

Query:  ELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR
        E+A+ +F +A+++ E A+ E+EKA  ++E A +++++T MEITC SC+Q F+
Subjt:  ELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR

AT2G01940.1 C2H2-like zinc finger protein2.5e-0929.22Show/hide
Query:  ELQLLPTPHTIASSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQI-RLAAMEKAYAERVRELTKR
        ELQLLP       +       ++  S  +     + +L LSI+            + +E+M              A+EQI ++A  EKAYAE  +   KR
Subjt:  ELQLLPTPHTIASSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQI-RLAAMEKAYAERVRELTKR

Query:  EIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR
        + E+A+ EF  A+++ ++A+ E+E+A+ +KE++ +++ ST M++TCQ+C+ +F+
Subjt:  EIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR

AT2G01940.2 C2H2-like zinc finger protein2.5e-0929.22Show/hide
Query:  ELQLLPTPHTIASSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQI-RLAAMEKAYAERVRELTKR
        ELQLLP       +       ++  S  +     + +L LSI+            + +E+M              A+EQI ++A  EKAYAE  +   KR
Subjt:  ELQLLPTPHTIASSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQI-RLAAMEKAYAERVRELTKR

Query:  EIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR
        + E+A+ EF  A+++ ++A+ E+E+A+ +KE++ +++ ST M++TCQ+C+ +F+
Subjt:  EIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR

AT2G01940.3 C2H2-like zinc finger protein2.5e-0929.22Show/hide
Query:  ELQLLPTPHTIASSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQI-RLAAMEKAYAERVRELTKR
        ELQLLP       +       ++  S  +     + +L LSI+            + +E+M              A+EQI ++A  EKAYAE  +   KR
Subjt:  ELQLLPTPHTIASSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQI-RLAAMEKAYAERVRELTKR

Query:  EIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR
        + E+A+ EF  A+++ ++A+ E+E+A+ +KE++ +++ ST M++TCQ+C+ +F+
Subjt:  EIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR

AT3G48550.1 BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3)1.1e-3352.41Show/hide
Query:  EDEDQKELQLLPTPHTIAS---SSRPSASSMRFRSDPYEAGP---GSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKA
        + +  KELQLLP+P +  S     RP+  +    ++ + +       LDL+LSIS+  I    E          P     VEALKWQAAEQIRLAA+EKA
Subjt:  EDEDQKELQLLPTPHTIAS---SSRPSASSMRFRSDPYEAGP---GSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKA

Query:  YAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP
        YAERVRELT+RE+E+AQ+EF RAR MW++AREEVE+AER+KER+  ++D+ C+EITC SCRQRFRP
Subjt:  YAERVRELTKREIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGATGAAGATCAGAAGGAGTTGCAGCTCCTTCCGACGCCTCACACCATAGCGTCGTCGTCCCGCCCGTCCGCGTCGTCGATGAGGTTCCGGTCGGATCCGTATGA
AGCGGGTCCAGGATCGCTGGACCTGCAGCTATCGATAAGCGTGAGGCCAATCCGGCCTACGGCGGAGTGCGTGTTCAAGTACGAGGAGGTGATGAAGCCGGAGGCGGCGA
GCTGCGTGGAGGCGCTGAAGTGGCAGGCGGCGGAGCAAATAAGGCTGGCGGCGATGGAAAAGGCGTACGCGGAGAGAGTGAGAGAACTGACGAAGAGGGAGATAGAATTG
GCGCAGACGGAATTCGGAAGGGCTCGACAGATGTGGGAGAGGGCGCGAGAAGAAGTGGAGAAGGCGGAGCGTATGAAAGAGAGAGCCACTCGGCAAATGGACTCTACGTG
CATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGATGAAGATCAGAAGGAGTTGCAGCTCCTTCCGACGCCTCACACCATAGCGTCGTCGTCCCGCCCGTCCGCGTCGTCGATGAGGTTCCGGTCGGATCCGTATGA
AGCGGGTCCAGGATCGCTGGACCTGCAGCTATCGATAAGCGTGAGGCCAATCCGGCCTACGGCGGAGTGCGTGTTCAAGTACGAGGAGGTGATGAAGCCGGAGGCGGCGA
GCTGCGTGGAGGCGCTGAAGTGGCAGGCGGCGGAGCAAATAAGGCTGGCGGCGATGGAAAAGGCGTACGCGGAGAGAGTGAGAGAACTGACGAAGAGGGAGATAGAATTG
GCGCAGACGGAATTCGGAAGGGCTCGACAGATGTGGGAGAGGGCGCGAGAAGAAGTGGAGAAGGCGGAGCGTATGAAAGAGAGAGCCACTCGGCAAATGGACTCTACGTG
CATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTCTTAA
Protein sequenceShow/hide protein sequence
MEDEDQKELQLLPTPHTIASSSRPSASSMRFRSDPYEAGPGSLDLQLSISVRPIRPTAECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIEL
AQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS