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Carg10283 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg10283
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSnurportin-1
Genome locationCarg_Chr10:232324..234198
RNA-Seq ExpressionCarg10283
SyntenyCarg10283
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589387.1 hypothetical protein SDJN03_14810, partial [Cucurbita argyrosperma subsp. sororia]1.5e-5383.69Show/hide
Query:  LSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEAYLLSRMIYYFTS-----------------IPITSQVPHLHWSGRMRIAVDM
        LSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEAYLLSRMIYYFT+                 IPITSQVPHLHWSGRMRIAVDM
Subjt:  LSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEAYLLSRMIYYFTS-----------------IPITSQVPHLHWSGRMRIAVDM

Query:  LLTQIKWTSSKPTAGDGKGATLDDPSVDIGCLDGNLFRFII
        LLTQIKWTSSKPTAGDGKGATLDDPSVDIGCLDG+L   +I
Subjt:  LLTQIKWTSSKPTAGDGKGATLDDPSVDIGCLDGNLFRFII

KAG7023065.1 hypothetical protein SDJN02_14089, partial [Cucurbita argyrosperma subsp. argyrosperma]3.6e-79100Show/hide
Query:  MITQLSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEAYLLSRMIYYFTSIPITSQVPHLHWSGRMRIAVDMLLTQIKWTSSKPT
        MITQLSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEAYLLSRMIYYFTSIPITSQVPHLHWSGRMRIAVDMLLTQIKWTSSKPT
Subjt:  MITQLSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEAYLLSRMIYYFTSIPITSQVPHLHWSGRMRIAVDMLLTQIKWTSSKPT

Query:  AGDGKGATLDDPSVDIGCLDGNLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRARG
        AGDGKGATLDDPSVDIGCLDGNLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRARG
Subjt:  AGDGKGATLDDPSVDIGCLDGNLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRARG

XP_022135463.1 snurportin-1 [Momordica charantia]1.9e-1164.62Show/hide
Query:  GDGKGATLDDPSVDIGCLDG-----------NLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRAR
        GDGK  T DDP V+ GCLDG           NL RF I DGGLTIVDGRIQ  DLHY GKVNRAR
Subjt:  GDGKGATLDDPSVDIGCLDG-----------NLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRAR

XP_022921813.1 uncharacterized protein LOC111429956 [Cucurbita moschata]3.5e-4293.33Show/hide
Query:  QLSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEAYLLSRMIYYFTSIPITSQVPHLHWSGRMRIAVDMLLTQIKWTSSKPTAGD
        +LSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQE YLLSRMIYYFT IPITSQV HLHWSGRMRIAVDMLLTQIKWTSSKPTA  
Subjt:  QLSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEAYLLSRMIYYFTSIPITSQVPHLHWSGRMRIAVDMLLTQIKWTSSKPTAGD

Query:  GKGAT
        G GAT
Subjt:  GKGAT

XP_038879771.1 snurportin-1 [Benincasa hispida]1.4e-1166.15Show/hide
Query:  GDGKGATLDDPSVDIGCLD-----------GNLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRAR
        GDG  AT DDP VD GCLD           GNL RF I DGGLTIVDGRIQ  DL YTGKVNRAR
Subjt:  GDGKGATLDDPSVDIGCLD-----------GNLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRAR

TrEMBL top hitse value%identityAlignment
A0A0A0LNL4 Snurportin-12.9e-1064.06Show/hide
Query:  DGKGATLDDPSVDIGCLD-----------GNLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRAR
        DGK AT DDP V  GCLD           GNL RF I DGGLTIVDGRIQ  DL Y+GKVNRAR
Subjt:  DGKGATLDDPSVDIGCLD-----------GNLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRAR

A0A5A7URL4 Snurportin-18.4e-1062.5Show/hide
Query:  DGKGATLDDPSVDIGCLD-----------GNLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRAR
        DGK AT DDP V  GCLD           GNL RF I DGGLTIVDG+IQ  DL Y GKVNRAR
Subjt:  DGKGATLDDPSVDIGCLD-----------GNLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRAR

A0A6J1C4W1 Snurportin-19.0e-1264.62Show/hide
Query:  GDGKGATLDDPSVDIGCLDG-----------NLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRAR
        GDGK  T DDP V+ GCLDG           NL RF I DGGLTIVDGRIQ  DLHY GKVNRAR
Subjt:  GDGKGATLDDPSVDIGCLDG-----------NLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRAR

A0A6J1E4W0 uncharacterized protein LOC1114299561.7e-4293.33Show/hide
Query:  QLSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEAYLLSRMIYYFTSIPITSQVPHLHWSGRMRIAVDMLLTQIKWTSSKPTAGD
        +LSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQE YLLSRMIYYFT IPITSQV HLHWSGRMRIAVDMLLTQIKWTSSKPTA  
Subjt:  QLSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEAYLLSRMIYYFTSIPITSQVPHLHWSGRMRIAVDMLLTQIKWTSSKPTAGD

Query:  GKGAT
        G GAT
Subjt:  GKGAT

A0A6J1KQC3 Snurportin-16.5e-1062.5Show/hide
Query:  DGKGATLDDPSVDIGCLD-----------GNLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRAR
        DGK  T DDP VD GCLD           GNL RF I DGGLTIVDGRIQ  DL Y GKVN AR
Subjt:  DGKGATLDDPSVDIGCLD-----------GNLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G24880.1 unknown protein6.0e-0846.88Show/hide
Query:  DGKGATLDDPSVDIGCLD-----------GNLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRAR
        +GK  T DDP V   CL+           G+L RF I DGGL  VDGR ++ DL Y G  NRAR
Subjt:  DGKGATLDDPSVDIGCLD-----------GNLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTACACAGCTGAGTTTTGCTTCTTCTGGCTCAATTCCAAGCTTGTTGAAACTGGTGCTTGTGAGCCACCTTCATAGTATCACGAATATAAATTCAGCTCGATACCT
GTATATACATGCCATCAAAATAGTCTCTATGTCGCTTATACAGGAGGCATACCTTTTGTCAAGGATGATCTATTATTTTACAAGCATTCCCATTACCAGCCAGGTACCCC
ACTTGCATTGGTCTGGAAGGATGAGAATTGCAGTCGATATGTTATTGACACAGATAAAATGGACAAGTTCCAAGCCAACAGCAGGTGATGGAAAGGGTGCTACATTAGAT
GATCCTTCTGTGGACATTGGTTGCTTAGATGGTAATCTATTTCGATTTATCATTGTTGATGGTGGGTTGACCATTGTGGATGGGAGGATTCAGAGGGTAGATTTACATTA
CACTGGCAAGGTCAATCGAGCTCGAGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGATTACACAGCTGAGTTTTGCTTCTTCTGGCTCAATTCCAAGCTTGTTGAAACTGGTGCTTGTGAGCCACCTTCATAGTATCACGAATATAAATTCAGCTCGATACCT
GTATATACATGCCATCAAAATAGTCTCTATGTCGCTTATACAGGAGGCATACCTTTTGTCAAGGATGATCTATTATTTTACAAGCATTCCCATTACCAGCCAGGTACCCC
ACTTGCATTGGTCTGGAAGGATGAGAATTGCAGTCGATATGTTATTGACACAGATAAAATGGACAAGTTCCAAGCCAACAGCAGGTGATGGAAAGGGTGCTACATTAGAT
GATCCTTCTGTGGACATTGGTTGCTTAGATGGTAATCTATTTCGATTTATCATTGTTGATGGTGGGTTGACCATTGTGGATGGGAGGATTCAGAGGGTAGATTTACATTA
CACTGGCAAGGTCAATCGAGCTCGAGGATAGTTACTCCAAGGTTTGTGCTAAATATCATACTTGTAGGGTCAAATCATATTCA
Protein sequenceShow/hide protein sequence
MITQLSFASSGSIPSLLKLVLVSHLHSITNINSARYLYIHAIKIVSMSLIQEAYLLSRMIYYFTSIPITSQVPHLHWSGRMRIAVDMLLTQIKWTSSKPTAGDGKGATLD
DPSVDIGCLDGNLFRFIIVDGGLTIVDGRIQRVDLHYTGKVNRARG