CuGenDBv2

Gene ID	Carg10284
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Snurportin-1
Genome location	Carg_Chr10:234215..235284
RNA-Seq Expression	Carg10284
Synteny	Carg10284
Gene Ontology terms	GO:0061015 - snRNA import into nucleus (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component)
InterPro domains	IPR017336 - Snurportin-1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0057774.1 snurportin-1 [Cucumis melo var. makuwa]

4.3e-41

62.29

Show/hide

Query:  RRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPE------------
        RRDAQQQARSLASTLLSLSS+FNEP TSEP                       EFNEPA  +LDV QA KLK S ARKWFSKQLLLPE            
Subjt:  RRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPE------------

Query:  -CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC
          V ARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTK        +   +C      QTYYVIDMIC
Subjt:  -CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC

KAG7023066.1 hypothetical protein SDJN02_14090, partial [Cucurbita argyrosperma subsp. argyrosperma]

9.9e-70

100

Show/hide

Query:  KRRDAQQQARSLASTLLSLSSTFNEPITSEPDEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPECVLARPSGKRCFVVSSNGTTISRLRNGSILHRF
        KRRDAQQQARSLASTLLSLSSTFNEPITSEPDEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPECVLARPSGKRCFVVSSNGTTISRLRNGSILHRF
Subjt:  KRRDAQQQARSLASTLLSLSSTFNEPITSEPDEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPECVLARPSGKRCFVVSSNGTTISRLRNGSILHRF

Query:  PSALPNGAKTKKCLWIRFECPVDGQTYYVIDMIC
        PSALPNGAKTKKCLWIRFECPVDGQTYYVIDMIC
Subjt:  PSALPNGAKTKKCLWIRFECPVDGQTYYVIDMIC

KGN63485.1 hypothetical protein Csa_013248 [Cucumis sativus]

5.6e-41

61.71

Show/hide

Query:  RRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPE------------
        RRDAQQQARSLASTLLSLSS+F+EP TSEP                       EFNEPA  +LDV QA KLK S+ARKWFSKQLLLPE            
Subjt:  RRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPE------------

Query:  -CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC
          V ARPSGKRCFVVSSNGTTISRLRNGSILHRFPS+LPNGAKTKK       +   +C      QTYYVIDMIC
Subjt:  -CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC

XP_004138050.1 snurportin-1 [Cucumis sativus]

5.6e-41

61.71

Show/hide

Query:  RRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPE------------
        RRDAQQQARSLASTLLSLSS+F+EP TSEP                       EFNEPA  +LDV QA KLK S+ARKWFSKQLLLPE            
Subjt:  RRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPE------------

Query:  -CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC
          V ARPSGKRCFVVSSNGTTISRLRNGSILHRFPS+LPNGAKTKK       +   +C      QTYYVIDMIC
Subjt:  -CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC

XP_016903207.1 PREDICTED: snurportin-1 [Cucumis melo]

4.3e-41

62.29

Show/hide

Query:  RRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPE------------
        RRDAQQQARSLASTLLSLSS+FNEP TSEP                       EFNEPA  +LDV QA KLK S ARKWFSKQLLLPE            
Subjt:  RRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPE------------

Query:  -CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC
          V ARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTK        +   +C      QTYYVIDMIC
Subjt:  -CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LNL4 Snurportin-1

2.7e-41

61.71

Show/hide

Query:  RRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPE------------
        RRDAQQQARSLASTLLSLSS+F+EP TSEP                       EFNEPA  +LDV QA KLK S+ARKWFSKQLLLPE            
Subjt:  RRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPE------------

Query:  -CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC
          V ARPSGKRCFVVSSNGTTISRLRNGSILHRFPS+LPNGAKTKK       +   +C      QTYYVIDMIC
Subjt:  -CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC

A0A1S4E4Q9 Snurportin-1

2.1e-41

62.29

Show/hide

Query:  RRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPE------------
        RRDAQQQARSLASTLLSLSS+FNEP TSEP                       EFNEPA  +LDV QA KLK S ARKWFSKQLLLPE            
Subjt:  RRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPE------------

Query:  -CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC
          V ARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTK        +   +C      QTYYVIDMIC
Subjt:  -CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC

A0A5A7URL4 Snurportin-1

2.1e-41

62.29

Show/hide

Query:  RRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPE------------
        RRDAQQQARSLASTLLSLSS+FNEP TSEP                       EFNEPA  +LDV QA KLK S ARKWFSKQLLLPE            
Subjt:  RRDAQQQARSLASTLLSLSSTFNEPITSEP----------------------DEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPE------------

Query:  -CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC
          V ARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTK        +   +C      QTYYVIDMIC
Subjt:  -CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC

A0A6J1EJF9 Snurportin-1

2.6e-39

57.78

Show/hide

Query:  RRDAQQQARSLASTLLSLSSTFNEPITSE----------------------PDEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPE------------
        RRDAQQQARSLASTLLSLSSTFNEP TSE                        EFNEP+  + DV QA KLKGS+ARKWFS+QLLLPE            
Subjt:  RRDAQQQARSLASTLLSLSSTFNEPITSE----------------------PDEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPE------------

Query:  -CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTK------------KCLWIRFECPVDGQTYYVIDMIC
          V ARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGA+ +             C++   +     QTYYVIDMIC
Subjt:  -CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTK------------KCLWIRFECPVDGQTYYVIDMIC

A0A6J1KQC3 Snurportin-1

2.6e-39

57.78

Show/hide

Query:  RRDAQQQARSLASTLLSLSSTFNEPITSE----------------------PDEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPE------------
        RRDAQQQARSLASTLLSLSSTFNEP TSE                        EFNEP+  + DV QA KLKGS+ARKWFS+QLLLPE            
Subjt:  RRDAQQQARSLASTLLSLSSTFNEPITSE----------------------PDEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPE------------

Query:  -CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTK------------KCLWIRFECPVDGQTYYVIDMIC
          V ARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGA+ +             C++   +     QTYYVIDMIC
Subjt:  -CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTK------------KCLWIRFECPVDGQTYYVIDMIC

SwissProt top hits

e value

%identity

Alignment

O95149 Snurportin-1

6.8e-05

27.81

Show/hide

Query:  KRRDAQQQARSLASTLLSLSSTFNEPITSEPDEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPECVLARPS-------------GKRCFVVSSNGTT
        KR D    AR LA          ++    E +E N+    ++D+    KL      K ++ QL+L E ++  PS             GKR  +V+S G+T
Subjt:  KRRDAQQQARSLASTLLSLSSTFNEPITSEPDEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPECVLARPS-------------GKRCFVVSSNGTT

Query:  ISRLRNGSILHRFPSALPNGAKTKKCL--WIRFECPVD--GQTYYVIDMIC
         +  ++G  ++RF S LP G +       +   +C  +   QTYYV+D++C
Subjt:  ISRLRNGSILHRFPSALPNGAKTKKCL--WIRFECPVD--GQTYYVIDMIC

Q5ZI43 Snurportin-1

8.0e-06

30.69

Show/hide

Query:  GSQARKWFSKQLLLPE-------------CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAK---TKKCLWIRFECPVD--GQTYYVIDMI
        G +  K ++ QL+L E              V+  P GKR  VV+S G+T +  ++G  ++RFPS LP G +     + ++   +C  +   QTYY++D++
Subjt:  GSQARKWFSKQLLLPE-------------CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAK---TKKCLWIRFECPVD--GQTYYVIDMI

Query:  C
        C
Subjt:  C

Q68FP5 Snurportin-1

1.5e-04

26.97

Show/hide

Query:  KRRDAQQQARSLASTLLSLSSTFNEPITSEPDEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPECVLARPS-------------GKRCFVVSSNGTT
        KR D    AR LA         +    + E ++  +   +DLD ++ L        K ++ QL+L E ++  PS             GKR  +V+S G+T
Subjt:  KRRDAQQQARSLASTLLSLSSTFNEPITSEPDEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPECVLARPS-------------GKRCFVVSSNGTT

Query:  ISRLRNGSILHRFPSALPNGAKTKKCL---WIRFECPVD--GQTYYVIDMIC
         +  ++G  ++RF S LP G +        +   +C      QTYYV+D++C
Subjt:  ISRLRNGSILHRFPSALPNGAKTKKCL---WIRFECPVD--GQTYYVIDMIC

Q80W37 Snurportin-1

8.8e-05

28.1

Show/hide

Query:  DEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPECVLARPS-------------GKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKCL---W
        +E N+    ++D+  + KL      K ++ QL+L E ++  PS             GKR  +V+S G+T +  ++G  ++RF S LP G +        +
Subjt:  DEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPECVLARPS-------------GKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKCL---W

Query:  IRFECPVD--GQTYYVIDMIC
           +C      QTYYV+D++C
Subjt:  IRFECPVD--GQTYYVIDMIC

Arabidopsis top hits

e value

%identity

Alignment

AT4G24880.1 unknown protein

4.8e-30

48.15

Show/hide

Query:  RRDAQQQARSLASTLLSLSSTFNEPITSEPDEFNEPAP---------IDLDVLQALKLKGSQARKWFSKQLLLPE-------------CVLARPSGKRCF
        R DAQQ+AR+LAS+L+SL S+  +    +P+  +E  P            DV QA +L+G +ARKWF+KQL+LPE              VLARP+GKRCF
Subjt:  RRDAQQQARSLASTLLSLSSTFNEPITSEPDEFNEPAP---------IDLDVLQALKLKGSQARKWFSKQLLLPE-------------CVLARPSGKRCF

Query:  VVSSNGTTISRLRNGSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC
        VVSS+GTT+SR+RNGS LH FPSALP GA+ K        +   +C      QTYYVIDM+C
Subjt:  VVSSNGTTISRLRNGSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

AAGCGCCGCGACGCTCAGCAACAAGCCCGCTCCTTAGCCTCCACGCTCCTCTCCCTCTCATCCACATTTAACGAGCCTATTACCTCTGAGCCGGATGAGTTTAACGAGCC
TGCTCCGATAGATCTCGATGTGCTCCAGGCTTTGAAGCTCAAAGGTTCACAGGCTCGTAAGTGGTTTTCGAAGCAACTGTTGCTTCCTGAATGCGTACTTGCAAGGCCTT
CCGGTAAACGATGCTTTGTAGTTTCTTCAAACGGAACAACTATCAGCAGGCTACGAAATGGATCAATTCTGCATCGTTTTCCTTCTGCTCTACCTAACGGAGCAAAGACA
AAAAAATGCCTCTGGATCCGGTTTGAATGTCCTGTAGATGGACAAACGTACTACGTCATTGATATGATTTGTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

KRRDAQQQARSLASTLLSLSSTFNEPITSEPDEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPECVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKT
KKCLWIRFECPVDGQTYYVIDMIC

Carg10284 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome