; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg10348 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg10348
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRibosomal RNA-processing protein 40
Genome locationCarg_Chr10:549655..552015
RNA-Seq ExpressionCarg10348
SyntenyCarg10348
Gene Ontology termsGO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0043928 - exonucleolytic catabolism of deadenylated mRNA (biological process)
GO:0071034 - CUT catabolic process (biological process)
GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process (biological process)
GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR004088 - K Homology domain, type 1
IPR012340 - Nucleic acid-binding, OB-fold
IPR026699 - Exosome complex RNA-binding protein 1/RRP40/RRP4
IPR036612 - K Homology domain, type 1 superfamily
IPR037319 - Rrp40, S1 domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589448.1 Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. sororia]1.6e-131100Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA
        MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV
        LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV

Query:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS

KAG7023129.1 putative exosome complex component rrp40, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-131100Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA
        MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV
        LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV

Query:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS

XP_022921727.1 putative exosome complex component rrp40 [Cucurbita moschata]2.8e-13199.59Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA
        MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANET+KLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV
        LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV

Query:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS

XP_022988424.1 putative exosome complex component rrp40 [Cucurbita maxima]6.9e-13098.35Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA
        MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRF+KPNKYWVESSQKRYVPCVEDCVLGIVVDSR+DNFLVDIKGPA
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV
        LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV

Query:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNA+LNSETLSGVQQRIMVD LLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS

XP_023515767.1 putative exosome complex component rrp40 [Cucurbita pepo subsp. pepo]1.4e-13099.18Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA
        MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSR+DNFLVDIKGPA
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV
        LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFG KLSFETAVGLNGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV

Query:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS

TrEMBL top hitse value%identityAlignment
A0A0A0LP58 Ribosomal RNA-processing protein 406.5e-12695.88Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA
        MVEK SSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQD DAISVSKVGKLRFSKPNKYWVESSQKRYVPC EDCVLGIV+DSRADNFLVDIKGP+
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV
        LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSP+CPVLES GKKLSFETAVGLNGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV

Query:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS
        WVNADSPST IVVSNAILNSETLSGVQQRIMVDKLL NLKLSS
Subjt:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS

A0A6J1E1A1 Ribosomal RNA-processing protein 401.4e-13199.59Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA
        MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANET+KLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV
        LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV

Query:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS

A0A6J1ECW1 Ribosomal RNA-processing protein 408.5e-12694.65Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA
        MVEKSSSSSS LVDQPVVPGDVVLDLSNM NETIKLGGGLRQDHDAISV+KVGKLRFSKPNKYWVESSQKRYVPC EDCVLGIVVDSR+DNFLVDIKGP+
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGY+F+CSTGLSRMLLSSPTCPVLES GKKLSFETAVG+NGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV

Query:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAI+NSETLSGVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS

A0A6J1I8H3 Ribosomal RNA-processing protein 402.2e-12695.06Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA
        MVEKSSSSSS LVDQPVVPGDVVLDLSNM NETIKLGGGLRQDHDAISV+KVGKLRFSKPNKYWVESSQKRYVPC EDCVLGIVVDSR+DNFLVDIKGP+
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV
        LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFG LKDGY+F+CSTGLSRMLLSSPTCPVLES GKKLSFETAVG+NGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV

Query:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAI+NSETLSGVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS

A0A6J1JLH7 Ribosomal RNA-processing protein 403.3e-13098.35Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA
        MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRF+KPNKYWVESSQKRYVPCVEDCVLGIVVDSR+DNFLVDIKGPA
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV
        LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV

Query:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNA+LNSETLSGVQQRIMVD LLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS

SwissProt top hitse value%identityAlignment
Q3T0E1 Exosome complex component RRP404.2e-3735.29Show/hide
Query:  SSSTLVDQPVVPGDVV--------------------LDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNK------YWVESSQKRYVPCVEDCVL
        ++ T++DQ V+PG+ +                    L+ +  +   +  G GLR+  D + V+K G+LR  +P        YWV+S QKRYVP   D V+
Subjt:  SSSTLVDQPVVPGDVV--------------------LDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNK------YWVESSQKRYVPCVEDCVL

Query:  GIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSSPTCPV
        GIV     D F VD+ G   A L  LAFEG T+RN P  ++G L+Y + V AN  M PE+ C D+ G+A G G++ +DG +F+ + GL R LL +P C +
Subjt:  GIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSSPTCPV

Query:  LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKL
        L+  GK    E   G+NGR+WV A +   T++++N +   E ++  Q++ +  +L
Subjt:  LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKL

Q7KWX9 Putative exosome complex component rrp403.4e-4745.18Show/hide
Query:  TLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNK-YWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAF
        TL DQ VVPGDV+  + ++    +++G GL Q  D +  +K G LR+SK ++ YW+E+ QKRYVP VED V+G +++  A++F VDI     A L   +F
Subjt:  TLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNK-YWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAF

Query:  EGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRVWVNADSPST
        EG T+ N P   +G L+Y RV  AN  M PE+ C     KA GFG L  GYM  CS GLS  LLS   C +L+  GK + +E AVG+NGRVW+N+ S   
Subjt:  EGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRVWVNADSPST

Query:  TIVVSNAILNSETLSGVQQRIMVDKLLN
        TIVVSN I NS+ +   Q    + K L+
Subjt:  TIVVSNAILNSETLSGVQQRIMVDKLLN

Q7TQK4 Exosome complex component RRP409.3e-3740Show/hide
Query:  GGGLRQDHDAISVSKVGKLRFSKPN-----KYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGALLYVRVV
        G GLR+  D + V+K G+LR  +P+      YWV+S QKRYVP   D V+GIV+    D F VD+ G   A L  LAFEG T+RN P  ++G L+Y + V
Subjt:  GGGLRQDHDAISVSKVGKLRFSKPN-----KYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGALLYVRVV

Query:  KANPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRI
         AN  M PE+ C D+ G+A G G++ +DG +F+ + GL R LL +P C +++  GK    E   G+NGR+WV A +   T++++N +   E ++  Q++ 
Subjt:  KANPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRI

Query:  MVDKL
        +  +L
Subjt:  MVDKL

Q8IPX7 Exosome complex component RRP401.5e-3938.89Show/hide
Query:  SSSSTLVDQPVVPGDVVLDLSNMA-NETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLP
        S++ST+    V+PG+ +  +  +A ++ + LG GLR+  D +  SK G LR  +P  +WV++ Q+RY+P   D +LGIV     D + VDI     A + 
Subjt:  SSSSTLVDQPVVPGDVVLDLSNMA-NETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLP

Query:  VLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRVWVNAD
         LAFE  +++N P    G L+Y RV+ A+  + PEL C ++ GK+   G+L DG+ F+CS  L RMLL    CPVL +  ++L +E AVG+NGR+W+ A 
Subjt:  VLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRVWVNAD

Query:  SPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNL
        S   T+ ++NAI   E  SG  +   +DK+  NL
Subjt:  SPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNL

Q9NQT5 Exosome complex component RRP402.1e-3637.99Show/hide
Query:  PGDVV---LDLSNMANETIKL--GGGLRQDHDAISVSKVGKLRFSKPNK------YWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVL
        PG  V   L L+  A   +++  G GLR+  D + V+K G+LR  +P        YWV+S QKRYVP   D V+GIV     D F VD+ G   A L  L
Subjt:  PGDVV---LDLSNMANETIKL--GGGLRQDHDAISVSKVGKLRFSKPNK------YWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVL

Query:  AFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRVWVNADS
        +FEG T+RN P  ++G L+Y + V AN  M PE+ C D+ G+A G G++ +DG +F+ + GL R LL +P C +++  GK    E   G+NGR+WV A +
Subjt:  AFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRVWVNADS

Query:  PSTTIVVSNAILNSETLSGVQQRIMVDKL
           T++++N +   E ++  Q++ +  +L
Subjt:  PSTTIVVSNAILNSETLSGVQQRIMVDKL

Arabidopsis top hitse value%identityAlignment
AT2G25355.1 PNAS-3 related3.1e-9673.08Show/hide
Query:  SSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLP
        S+S ++L+DQ VVPGDVVLDLSNM N+TIKLG GLRQD++ ISV + GKLR+SKPNKYWVESS KRYVP  ED VLGIVVD + +N+ +DIKGP LA LP
Subjt:  SSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLP

Query:  VLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRVWVNAD
        VLAFEG  RRN PKFE+  LLY RVVK N GMNPEL+C D SGKAAGFG LKDG+MFE STGLSRMLLSSPTCPVLE+ GKKLSFETA GLNGR WV+A 
Subjt:  VLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRVWVNAD

Query:  SPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNL
        +P   I+V+NA++NSETLSG QQRIMV+KLL  +
Subjt:  SPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNL

AT2G25355.2 PNAS-3 related1.0e-8672.99Show/hide
Query:  MANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGALLYV
        M N+TIKLG GLRQD++ ISV + GKLR+SKPNKYWVESS KRYVP  ED VLGIVVD + +N+ +DIKGP LA LPVLAFEG  RRN PKFE+  LLY 
Subjt:  MANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGALLYV

Query:  RVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQ
        RVVK N GMNPEL+C D SGKAAGFG LKDG+MFE STGLSRMLLSSPTCPVLE+ GKKLSFETA GLNGR WV+A +P   I+V+NA++NSETLSG QQ
Subjt:  RVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQ

Query:  RIMVDKLLNNL
        RIMV+KLL  +
Subjt:  RIMVDKLLNNL

AT4G32175.1 PNAS-3 related2.4e-9674.58Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA
        M  K S S ++L++Q VVPGDVVLDLSNM N+TIKLG GL QD+DAIS  + GKL +SKPNKYW+ESS KRY+P  +D VLGIVVDSRADNF VDIKGP 
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPA

Query:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV
        LA LPVLAFEGGTRRNIPKFE+G LLY+RVVK N GMNPEL+CT+ASGKAA FG L+DG+MFE STGLSRMLL+SPT PV+E+ GKKLSFE AVGLNGRV
Subjt:  LAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRV

Query:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLL
        WVNA +P   I+V+NAI+NSE+LSG QQRIMV+KLL
Subjt:  WVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAAAAATCTTCTAGTTCGTCATCTACTCTCGTTGATCAGCCAGTTGTTCCAGGAGATGTGGTTCTCGACCTCTCAAACATGGCCAATGAGACCATCAAGCTTGG
AGGCGGTCTTCGACAGGACCACGATGCTATTTCTGTCTCCAAAGTTGGAAAGCTGAGGTTCTCGAAGCCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGC
CATGTGTGGAAGATTGTGTTCTTGGAATCGTGGTTGACTCTAGAGCCGATAATTTTCTTGTTGATATAAAAGGTCCGGCATTGGCCTTTCTTCCTGTTCTTGCATTTGAA
GGAGGAACCAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTATGTGAGGGTAGTGAAGGCAAACCCTGGTATGAATCCTGAGTTGGCATGCACTGATGCCAG
TGGGAAAGCAGCTGGATTTGGCCTCCTAAAAGATGGCTACATGTTTGAATGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCAACATGTCCAGTTCTTGAATCTT
TTGGGAAAAAGCTTTCATTCGAGACAGCAGTTGGTTTAAATGGCCGAGTTTGGGTGAATGCTGATTCTCCGTCCACAACCATTGTAGTTTCAAATGCAATATTGAACTCC
GAGACTCTGTCTGGGGTCCAACAGAGAATCATGGTGGACAAGCTCCTTAACAATTTAAAGCTGTCAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAAAAATCTTCTAGTTCGTCATCTACTCTCGTTGATCAGCCAGTTGTTCCAGGAGATGTGGTTCTCGACCTCTCAAACATGGCCAATGAGACCATCAAGCTTGG
AGGCGGTCTTCGACAGGACCACGATGCTATTTCTGTCTCCAAAGTTGGAAAGCTGAGGTTCTCGAAGCCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGC
CATGTGTGGAAGATTGTGTTCTTGGAATCGTGGTTGACTCTAGAGCCGATAATTTTCTTGTTGATATAAAAGGTCCGGCATTGGCCTTTCTTCCTGTTCTTGCATTTGAA
GGAGGAACCAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTATGTGAGGGTAGTGAAGGCAAACCCTGGTATGAATCCTGAGTTGGCATGCACTGATGCCAG
TGGGAAAGCAGCTGGATTTGGCCTCCTAAAAGATGGCTACATGTTTGAATGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCAACATGTCCAGTTCTTGAATCTT
TTGGGAAAAAGCTTTCATTCGAGACAGCAGTTGGTTTAAATGGCCGAGTTTGGGTGAATGCTGATTCTCCGTCCACAACCATTGTAGTTTCAAATGCAATATTGAACTCC
GAGACTCTGTCTGGGGTCCAACAGAGAATCATGGTGGACAAGCTCCTTAACAATTTAAAGCTGTCAAGTTAGTCTTGTAAACTTTAG
Protein sequenceShow/hide protein sequence
MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFE
GGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNS
ETLSGVQQRIMVDKLLNNLKLSS