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Carg10365 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg10365
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description39S ribosomal protein L47, mitochondrial
Genome locationCarg_Chr10:626757..629674
RNA-Seq ExpressionCarg10365
SyntenyCarg10365
Gene Ontology termsGO:0032543 - mitochondrial translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR010729 - Ribosomal protein L47, mitochondrial
IPR038340 - MRP-L47 superfamily, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589462.1 39S ribosomal protein L47, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]6.7e-5299.07Show/hide
Query:  MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP
        MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP
Subjt:  MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP

Query:  NPERIPKL
        NPERIPK+
Subjt:  NPERIPKL

KAG7023146.1 39S ribosomal protein L47, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]2.9e-87100Show/hide
Query:  MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP
        MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP
Subjt:  MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP

Query:  NPERIPKLCDLRACDGAEVNVPNQASTYRESHRRTRSSEICRDEEDGKRSVISEFSTCMQWSLSSR
        NPERIPKLCDLRACDGAEVNVPNQASTYRESHRRTRSSEICRDEEDGKRSVISEFSTCMQWSLSSR
Subjt:  NPERIPKLCDLRACDGAEVNVPNQASTYRESHRRTRSSEICRDEEDGKRSVISEFSTCMQWSLSSR

XP_022921695.1 39S ribosomal protein L47, mitochondrial [Cucurbita moschata]6.7e-5299.07Show/hide
Query:  MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP
        MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP
Subjt:  MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP

Query:  NPERIPKL
        NPERIPK+
Subjt:  NPERIPKL

XP_022988417.1 39S ribosomal protein L47, mitochondrial [Cucurbita maxima]1.8e-4995.37Show/hide
Query:  MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP
        MFLTRVIGRRFLAAARSETSSA AAAST T GYNPLEEFFEADRSP+DDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP
Subjt:  MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP

Query:  NPERIPKL
        NPERIPK+
Subjt:  NPERIPKL

XP_038879389.1 39S ribosomal protein L47, mitochondrial [Benincasa hispida]3.8e-4792.66Show/hide
Query:  MFLTRVIGRRFLAAARSETSSAT-AAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
        MFLTRV GR FLAAARSETSSAT AAA+T  MGYNPLEEFFEADRSP+DDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
Subjt:  MFLTRVIGRRFLAAARSETSSAT-AAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF

Query:  PNPERIPKL
        PNPERIPK+
Subjt:  PNPERIPKL

TrEMBL top hitse value%identityAlignment
A0A0A0LS48 Uncharacterized protein1.0e-4589.91Show/hide
Query:  MFLTRVIGRRFLAAARSETSSATAAASTTT-MGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
        MFLTRV GR FLAAARSETSSATAAA+ T   GYNPLEEFFEADRSP+D KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVIGRRFLAAARSETSSATAAASTTT-MGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF

Query:  PNPERIPKL
        PNPERIPK+
Subjt:  PNPERIPKL

A0A6J1C2P6 39S ribosomal protein L47, mitochondrial1.7e-4589.81Show/hide
Query:  MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP
        MFLTRV GR  LAAARSETSSA AAAST   GYNPLEEFFEADRSP+DDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF 
Subjt:  MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP

Query:  NPERIPKL
        NPERIPK+
Subjt:  NPERIPKL

A0A6J1E238 39S ribosomal protein L47, mitochondrial3.3e-5299.07Show/hide
Query:  MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP
        MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP
Subjt:  MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP

Query:  NPERIPKL
        NPERIPK+
Subjt:  NPERIPKL

A0A6J1I0P6 39S ribosomal protein L47, mitochondrial-like3.9e-4588.99Show/hide
Query:  MFLTRVIGRRFLAAARSETSSATAAA-STTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
        M LTR+ GR FLAAARSETS+ATAAA ST   GYNPLEEFFEA RSP+DDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
Subjt:  MFLTRVIGRRFLAAARSETSSATAAA-STTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF

Query:  PNPERIPKL
        PNPERIPK+
Subjt:  PNPERIPKL

A0A6J1JCZ2 39S ribosomal protein L47, mitochondrial8.9e-5095.37Show/hide
Query:  MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP
        MFLTRVIGRRFLAAARSETSSA AAAST T GYNPLEEFFEADRSP+DDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP
Subjt:  MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP

Query:  NPERIPKL
        NPERIPK+
Subjt:  NPERIPKL

SwissProt top hitse value%identityAlignment
P87232 54S ribosomal protein L4, mitochondrial2.4e-0742.65Show/hide
Query:  NPLEEFFEADRS-PNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP
        +PL  FF   ++ P   +   +GR+W A ELR KS++DL+ LWY  L+EKN+L TQR  +    L  P
Subjt:  NPLEEFFEADRS-PNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP

Q08DT6 39S ribosomal protein L47, mitochondrial2.2e-1348.78Show/hide
Query:  TTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKLCD
        TT+    LEEFF+  ++  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ K+ D
Subjt:  TTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKLCD

Q2H080 54S ribosomal protein L4, mitochondrial5.2e-0742.86Show/hide
Query:  LEEFFEADRSPNDDKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPE
        L EFF+      +  P +  +GRSW A ELR KSWDDL++LW+V  KE+N + T     N   L F   E
Subjt:  LEEFFEADRSPNDDKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPE

Q8K2Y7 39S ribosomal protein L47, mitochondrial2.2e-1348.78Show/hide
Query:  TTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKLCD
        TT+    LEEFF+  ++  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ K+ D
Subjt:  TTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKLCD

Q9HD33 39S ribosomal protein L47, mitochondrial8.4e-1347.56Show/hide
Query:  TTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKLCD
        TT+    LEEFF+  ++   +K V  G +W   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ K+ D
Subjt:  TTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKLCD

Arabidopsis top hitse value%identityAlignment
AT1G07830.1 ribosomal protein L29 family protein1.0e-4279.09Show/hide
Query:  MFLTRVIGRRFLAA--ARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLR
        MFLTR +GRRFLAA  ARSE+++A AAAST     NPLEEFFE DRS ++DKPVVYGR WKASELRLKSWDDL KLWYVLLKEKNMLMTQRQML AQN++
Subjt:  MFLTRVIGRRFLAA--ARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLR

Query:  FPNPERIPKL
        FPNPERIPK+
Subjt:  FPNPERIPKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTTGACTCGAGTGATTGGGAGAAGATTTCTGGCTGCTGCTAGATCAGAAACTTCCTCTGCCACAGCTGCTGCTTCTACAACTACGATGGGCTACAACCCGCTTGA
GGAGTTTTTTGAGGCAGATAGAAGTCCAAATGACGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGATGATCTTAATAAGC
TATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACACAACGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGTTGTGTGAT
CTCAGGGCTTGTGATGGTGCGGAAGTCAATGTGCCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGG
TAAACGCTCTGTGATTAGCGAATTCAGCACTTGTATGCAGTGGAGCTTATCATCAAGGTGA
mRNA sequenceShow/hide mRNA sequence
AAATAACTCTTCTTCTTCTTTTCGCGCCGTCTCCTCCTCCGTTTCAGCAGCTCAGTGTTGCCGCCGCCGCCACCGTCGCTTTCTTTCTTTCGTGGCGCCGCAGCCTCCTT
CTTAGCGAGTTTGCTCTGATTTTCTTCTCCCTTGTAACTGCATTGGTGCAGCCATGTTTTTGACTCGAGTGATTGGGAGAAGATTTCTGGCTGCTGCTAGATCAGAAACT
TCCTCTGCCACAGCTGCTGCTTCTACAACTACGATGGGCTACAACCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAAATGACGACAAACCTGTTGTATATGGTCG
AAGTTGGAAGGCTTCAGAACTACGGCTCAAGTCTTGGGATGATCTTAATAAGCTATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACACAACGCCAGATGCTTA
ATGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGTTGTGTGATCTCAGGGCTTGTGATGGTGCGGAAGTCAATGTGCCGAATCAAGCAAGTACTTACCGA
GAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGGTAAACGCTCTGTGATTAGCGAATTCAGCACTTGTATGCAGTGGAGCTTATCATCAAG
GTGACAAAAGGAGGAAGTGTTAGCATGATAATGCACGTCCGATACAACGTCTTATCATTCTGTAATCGAGGAGATATCATTAGAAGAAGCCTCGAAAATTGTTCGATGAT
TTCTAATAATGTTTTATCAACACTAATCAAAGTTTTGAAGATGTTTTAAATTGTGGCAAAGATTAAACAAGGGCCAAGTTTATTATTCTAGAATGTGTGTGTGTACTGAT
GCATTGGCTTTGATGAGATTCTGTGCAGCGCCTGTCTTGCTTGCTTATTCCAATTCTATTCCCTACAAGAGGGGGCAGAGCCACATGATTGGATTAGACATGGCGCTGCT
TTTTTGATTAGCTTCTTGATCAAGACTGTTTATTCATGAGGGTGAACATAGACAGGGGACCCCCAACATCCTTTCTTTCTTTCTTATTGCTCAGAGTTAAAACGATGCTG
CCATGTGGCACGATCTTGTTGGAAGGAAAAAATTGATTAATGCTGTGTCACCCATTAAAATAGTAATGTGTGTTGGAAC
Protein sequenceShow/hide protein sequence
MFLTRVIGRRFLAAARSETSSATAAASTTTMGYNPLEEFFEADRSPNDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKLCD
LRACDGAEVNVPNQASTYRESHRRTRSSEICRDEEDGKRSVISEFSTCMQWSLSSR