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Carg10405 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg10405
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor PRE3-like
Genome locationCarg_Chr10:828138..828492
RNA-Seq ExpressionCarg10405
SyntenyCarg10405
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135424.1 transcription factor ILI6-like [Momordica charantia]1.6e-3491.21Show/hide
Query:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ
        MSSRRSRSRQSG SRITDDQINDLVSKLQQLLPEIRH QSDKVSAA +LQETCNYI++LHREVDDLSERLSELLA+SDTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ

XP_022921825.1 transcription factor PRE3-like [Cucurbita moschata]2.3e-38100Show/hide
Query:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ
        MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ
Subjt:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ

XP_022987208.1 transcription factor PRE3-like [Cucurbita maxima]1.2e-3798.9Show/hide
Query:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ
        MSSRRSRSRQSG SRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ
Subjt:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ

XP_023516930.1 transcription factor PRE3-like [Cucurbita pepo subsp. pepo]2.0e-3798.9Show/hide
Query:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ
        MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIR SQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ
Subjt:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ

XP_038880650.1 transcription factor PRE3-like [Benincasa hispida]6.3e-3693.41Show/hide
Query:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ
        MSSRRSRSRQSG SRITDDQINDLVSKLQQLLPEIRH+QSDKVSAAK+LQETCNYI+NLHREVDDLSERLSELLA+SDTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ

TrEMBL top hitse value%identityAlignment
A0A1S3BWE2 transcription factor PRE3-like1.3e-3492.39Show/hide
Query:  MSSRRSRSRQSGGSR-ITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ
        MSSRRSRSRQSG SR ITDDQINDLVSKLQQLLPEIRH QSDKVSAAK+LQETCNYI+NLHREVDDLSERLSELLA+SDTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQSGGSR-ITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ

A0A6J1C1E4 transcription factor ILI6-like7.5e-3591.21Show/hide
Query:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ
        MSSRRSRSRQSG SRITDDQINDLVSKLQQLLPEIRH QSDKVSAA +LQETCNYI++LHREVDDLSERLSELLA+SDTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ

A0A6J1E6W2 transcription factor PRE3-like1.1e-38100Show/hide
Query:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ
        MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ
Subjt:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ

A0A6J1JIT1 transcription factor PRE3-like5.6e-3898.9Show/hide
Query:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ
        MSSRRSRSRQSG SRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ
Subjt:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ

A0A7N2MQ69 BHLH domain-containing protein8.3e-3489.01Show/hide
Query:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ
        MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIR  +SDK SAA +LQETCNYI+NLHREVDDLSERLSELLA++DTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI61.3e-2875Show/hide
Query:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSD--TAQAAIIRNLLM
        MSSRRSRSRQSG SRITD+QI+DLVSKLQ LLPE R   +D+V ++++LQETCNYI++LH+EVDDLSERLSELLA+SD  +AQAAIIR+LLM
Subjt:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSD--TAQAAIIRNLLM

F4JCN9 Transcription factor PRE44.7e-2668.48Show/hide
Query:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHS-QSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ
        MSSR+SRSRQ+G S ITD+QINDLV +L +LLPE+ ++ +S KVSA+++LQETC+YI+NL +EVDDLSERLS+LL S+D+AQAA+IR+LLMQ
Subjt:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHS-QSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ

Q0DUR2 Transcription factor ILI61.3e-2875Show/hide
Query:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSD--TAQAAIIRNLLM
        MSSRRSRSRQSG SRITD+QI+DLVSKLQ LLPE R   +D+V ++++LQETCNYI++LH+EVDDLSERLSELLA+SD  +AQAAIIR+LLM
Subjt:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSD--TAQAAIIRNLLM

Q8GW32 Transcription factor PRE61.6e-2978.26Show/hide
Query:  MSSRR-SRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSD--TAQAAIIRNLL
        MSSRR SRSRQSG SRI+DDQI+DLVSKLQ L+PE+R  +SDKVSA+K+LQETCNYI+NLHREVDDLS+RLSELLAS+D  +A+AAIIR+LL
Subjt:  MSSRR-SRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSD--TAQAAIIRNLL

Q9CA64 Transcription factor PRE38.3e-3179.57Show/hide
Query:  MSSRRSRSRQSGG-SRITDDQINDLVSKLQQLLPEIRHS-QSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ
        MS RRSRSRQS G SRI++DQINDL+ KLQQLLPE+R S +SDKVSAA++LQ+TCNYI+NLHREVDDLSERLSELLA+SDTAQAA+IR+LL Q
Subjt:  MSSRRSRSRQSGG-SRITDDQINDLVSKLQQLLPEIRHS-QSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.1e-3078.26Show/hide
Query:  MSSRR-SRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSD--TAQAAIIRNLL
        MSSRR SRSRQSG SRI+DDQI+DLVSKLQ L+PE+R  +SDKVSA+K+LQETCNYI+NLHREVDDLS+RLSELLAS+D  +A+AAIIR+LL
Subjt:  MSSRR-SRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSD--TAQAAIIRNLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 15.9e-3279.57Show/hide
Query:  MSSRRSRSRQSGG-SRITDDQINDLVSKLQQLLPEIRHS-QSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ
        MS RRSRSRQS G SRI++DQINDL+ KLQQLLPE+R S +SDKVSAA++LQ+TCNYI+NLHREVDDLSERLSELLA+SDTAQAA+IR+LL Q
Subjt:  MSSRRSRSRQSGG-SRITDDQINDLVSKLQQLLPEIRHS-QSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein6.5e-2365.59Show/hide
Query:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEI-RHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLAS--SDTAQAAIIRNLLM
        MS+RRSR + S  SRI+DDQ+ DLVSKL+Q LPEI    +SDKVSA+K+LQETCNYI+ LHREVD+LS+RLS+LL S   D+ +AA+IR+LLM
Subjt:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEI-RHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLAS--SDTAQAAIIRNLLM

AT3G47710.1 BANQUO 33.4e-2768.48Show/hide
Query:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHS-QSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ
        MSSR+SRSRQ+G S ITD+QINDLV +L +LLPE+ ++ +S KVSA+++LQETC+YI+NL +EVDDLSERLS+LL S+D+AQAA+IR+LLMQ
Subjt:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHS-QSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein4.2e-2263.44Show/hide
Query:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEI-RHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLAS--SDTAQAAIIRNLLM
        MS+RRSR + S   RI+D+Q+ DLVSKL+Q+LPEI +  +SDK SA+K+LQETCNYI+NL+REVD+LSERLS+LL S   D+ +AA+IR+LLM
Subjt:  MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEI-RHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLAS--SDTAQAAIIRNLLM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGCAGAAGATCCAGATCTAGGCAATCAGGCGGTTCAAGGATCACCGATGACCAAATTAACGATCTCGTTTCCAAGTTGCAGCAACTTCTTCCCGAGATTCGCCA
CTCGCAATCCGATAAGGTTTCGGCAGCAAAAATATTGCAAGAGACGTGTAACTACATAAAGAACTTACACCGAGAAGTGGACGATCTAAGCGAGAGACTATCGGAGTTGT
TGGCGTCGTCGGATACTGCTCAAGCTGCCATCATTAGAAACTTACTGATGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGCAGAAGATCCAGATCTAGGCAATCAGGCGGTTCAAGGATCACCGATGACCAAATTAACGATCTCGTTTCCAAGTTGCAGCAACTTCTTCCCGAGATTCGCCA
CTCGCAATCCGATAAGGTTTCGGCAGCAAAAATATTGCAAGAGACGTGTAACTACATAAAGAACTTACACCGAGAAGTGGACGATCTAAGCGAGAGACTATCGGAGTTGT
TGGCGTCGTCGGATACTGCTCAAGCTGCCATCATTAGAAACTTACTGATGCAATAG
Protein sequenceShow/hide protein sequence
MSSRRSRSRQSGGSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLHREVDDLSERLSELLASSDTAQAAIIRNLLMQ