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Carg10411 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg10411
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein EMBRYO DEFECTIVE 514-like
Genome locationCarg_Chr10:855335..857648
RNA-Seq ExpressionCarg10411
SyntenyCarg10411
Gene Ontology termsGO:0017126 - nucleologenesis (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR044673 - Protein DCL-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589507.1 Protein EMBRYO DEFECTIVE 514, partial [Cucurbita argyrosperma subsp. sororia]1.3e-5190.08Show/hide
Query:  MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAA---------KREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGPVT
        MAEETIPQPADNDQEVTNAEDMELENTEPGAE KGSNDEANEAA         KREREEESADGSVEEVKKQKMEKSVEEGRVEK + DGKGEEEPGPVT
Subjt:  MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAA---------KREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGPVT

Query:  IGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ
        IGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ
Subjt:  IGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ

KAG7023192.1 Protein EMBRYO DEFECTIVE, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-73100Show/hide
Query:  MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAAKREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGPVTIGPKSFRSS
        MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAAKREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGPVTIGPKSFRSS
Subjt:  MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAAKREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGPVTIGPKSFRSS

Query:  RELFDHFYKFLHHWPAYLNVNQGLLLWSPRVIRVECNVVYGFLVQHEG
        RELFDHFYKFLHHWPAYLNVNQGLLLWSPRVIRVECNVVYGFLVQHEG
Subjt:  RELFDHFYKFLHHWPAYLNVNQGLLLWSPRVIRVECNVVYGFLVQHEG

KAG7023193.1 Protein EMBRYO DEFECTIVE, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-5290.84Show/hide
Query:  MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAA---------KREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGPVT
        MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAA         KREREEESADGSVEEVKKQKMEKSVEEGRVEK + DGKGEEEPGPVT
Subjt:  MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAA---------KREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGPVT

Query:  IGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ
        IGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ
Subjt:  IGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ

XP_022987201.1 protein EMBRYO DEFECTIVE 514-like [Cucurbita maxima]3.9e-5188.55Show/hide
Query:  MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEA---------AKREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGPVT
        MAEETIPQPADN+QEVTNAEDMELENTEPGAEPKGSNDEANEA         +KREREEESADGSVEE KKQKMEKSVEEGRVEK + DGKGEEEPGPVT
Subjt:  MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEA---------AKREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGPVT

Query:  IGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ
        IGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ
Subjt:  IGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ

XP_023515551.1 protein EMBRYO DEFECTIVE 514-like [Cucurbita pepo subsp. pepo]5.1e-5187.79Show/hide
Query:  MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAA---------KREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGPVT
        MAEETIPQPADN+QEVTNAEDMELENTEPGAEPKGSNDEANEAA         KRER+EESADGSVEE KKQKMEKSVEEGR+EK + DGKGEEEPGPVT
Subjt:  MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAA---------KREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGPVT

Query:  IGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ
        IGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ
Subjt:  IGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ

TrEMBL top hitse value%identityAlignment
A0A6J1C0K4 protein EMBRYO DEFECTIVE 5148.2e-3164.44Show/hide
Query:  MAEETIPQPADNDQEVTNA--EDMELENTEPGAEPKGSN--DEANEAA---------KREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEP
        MAEET PQ A+ND EVTN+  EDMELE +EPGAEPKG N   EANEAA         KREREEE+AD ++ E KK K+EKSVEE R+EK + DGKG+E+ 
Subjt:  MAEETIPQPADNDQEVTNA--EDMELENTEPGAEPKGSN--DEANEAA---------KREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEP

Query:  GPVTIGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ
        GPV++GPKSF SS E+FD+FYKFLH+WPA LN+N+
Subjt:  GPVTIGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ

A0A6J1E069 protein EMBRYO DEFECTIVE 514-like9.3e-5188.55Show/hide
Query:  MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAA---------KREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGPVT
        MAEETIPQPA+N+QEVTNAEDMELENTEP AEPKGSNDEANEAA         KREREEESADGSVEEVKKQKMEKSVEEGRVEK + DGKGEEEPGPVT
Subjt:  MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAA---------KREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGPVT

Query:  IGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ
        IGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ
Subjt:  IGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ

A0A6J1F569 protein EMBRYO DEFECTIVE 514-like7.7e-2965.41Show/hide
Query:  MAEETIPQPADNDQEVTN--AEDMELENTEPGAEPKGSNDEANEAA---------KREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGP
        MAEETIPQ A+N  EVTN  AEDMELE+TEP  +  G + +ANEAA         KREREEE AD    E KK K+EKSVEE R+EK +RDGKGEEE GP
Subjt:  MAEETIPQPADNDQEVTN--AEDMELENTEPGAEPKGSNDEANEAA---------KREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGP

Query:  VTIGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ
        V++GPKSF SS ELFD+FY FLH+WPA LNVNQ
Subjt:  VTIGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ

A0A6J1IBL1 protein EMBRYO DEFECTIVE 514-like6.5e-2864.66Show/hide
Query:  MAEETIPQPADNDQEVTN--AEDMELENTEPGAEPKGSNDEANEAA---------KREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGP
        MAEETIPQ A+N  EVTN  AEDMELE+TEP  +  G + +ANEAA         KREREEE A   V E KK K+EKSVEE R+EK +RDGKGEEE GP
Subjt:  MAEETIPQPADNDQEVTN--AEDMELENTEPGAEPKGSNDEANEAA---------KREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGP

Query:  VTIGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ
        V++GPKSF SS ELF++FY FLH+WPA LNVNQ
Subjt:  VTIGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ

A0A6J1JDH2 protein EMBRYO DEFECTIVE 514-like1.9e-5188.55Show/hide
Query:  MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEA---------AKREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGPVT
        MAEETIPQPADN+QEVTNAEDMELENTEPGAEPKGSNDEANEA         +KREREEESADGSVEE KKQKMEKSVEEGRVEK + DGKGEEEPGPVT
Subjt:  MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEA---------AKREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGPVT

Query:  IGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ
        IGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ
Subjt:  IGPKSFRSSRELFDHFYKFLHHWPAYLNVNQ

SwissProt top hitse value%identityAlignment
Q8L557 Protein EMBRYO DEFECTIVE 5145.2e-0638.58Show/hide
Query:  MAEE-----TIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAAKREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGPVTIGPK
        MAEE     ++    + DQ+V    DME+E   P AE   + DE     KREREE   + +  E KKQK+ +                EE+ GPV +GPK
Subjt:  MAEE-----TIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAAKREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGPVTIGPK

Query:  SFRSSRELFDHFYKFLHHWPAYLNVNQ
         F +S  +FD+F KFLH WP  L+VN+
Subjt:  SFRSSRELFDHFYKFLHHWPAYLNVNQ

Arabidopsis top hitse value%identityAlignment
AT5G62440.1 Protein of unknown function (DUF3223)3.7e-0738.58Show/hide
Query:  MAEE-----TIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAAKREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGPVTIGPK
        MAEE     ++    + DQ+V    DME+E   P AE   + DE     KREREE   + +  E KKQK+ +                EE+ GPV +GPK
Subjt:  MAEE-----TIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAAKREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGPVTIGPK

Query:  SFRSSRELFDHFYKFLHHWPAYLNVNQ
         F +S  +FD+F KFLH WP  L+VN+
Subjt:  SFRSSRELFDHFYKFLHHWPAYLNVNQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAAGAAACAATCCCTCAACCGGCTGACAACGATCAGGAGGTGACCAACGCCGAAGACATGGAATTGGAGAACACAGAGCCCGGAGCAGAACCGAAAGGATCAAA
TGATGAAGCAAATGAGGCTGCAAAACGGGAGAGGGAGGAAGAAAGCGCCGATGGCAGCGTCGAAGAGGTGAAAAAGCAGAAGATGGAGAAGTCAGTTGAAGAGGGAAGGG
TTGAGAAGCGCAAGAGAGACGGGAAGGGAGAGGAGGAGCCTGGTCCTGTGACTATAGGCCCTAAGAGCTTTCGATCGTCGAGGGAATTGTTTGATCACTTCTATAAGTTC
CTCCACCACTGGCCTGCCTACTTGAACGTGAACCAGGGTCTGTTGTTGTGGTCTCCCCGAGTTATCAGAGTAGAGTGCAATGTGGTTTACGGATTTCTTGTGCAACATGA
AGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAAGAAACAATCCCTCAACCGGCTGACAACGATCAGGAGGTGACCAACGCCGAAGACATGGAATTGGAGAACACAGAGCCCGGAGCAGAACCGAAAGGATCAAA
TGATGAAGCAAATGAGGCTGCAAAACGGGAGAGGGAGGAAGAAAGCGCCGATGGCAGCGTCGAAGAGGTGAAAAAGCAGAAGATGGAGAAGTCAGTTGAAGAGGGAAGGG
TTGAGAAGCGCAAGAGAGACGGGAAGGGAGAGGAGGAGCCTGGTCCTGTGACTATAGGCCCTAAGAGCTTTCGATCGTCGAGGGAATTGTTTGATCACTTCTATAAGTTC
CTCCACCACTGGCCTGCCTACTTGAACGTGAACCAGGGTCTGTTGTTGTGGTCTCCCCGAGTTATCAGAGTAGAGTGCAATGTGGTTTACGGATTTCTTGTGCAACATGA
AGGCTAA
Protein sequenceShow/hide protein sequence
MAEETIPQPADNDQEVTNAEDMELENTEPGAEPKGSNDEANEAAKREREEESADGSVEEVKKQKMEKSVEEGRVEKRKRDGKGEEEPGPVTIGPKSFRSSRELFDHFYKF
LHHWPAYLNVNQGLLLWSPRVIRVECNVVYGFLVQHEG