| GenBank top hits | e value | %identity | Alignment |
|---|
| KAG7034557.1 RNA polymerase sigma factor sigF, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma] | 6.3e-290 | 100 | Show/hide |
Query: MFHEQATPRCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSNN
MFHEQATPRCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSNN
Subjt: MFHEQATPRCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSNN
Query: TGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHSRRKDTRRKTGENLDP
TGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHSRRKDTRRKTGENLDP
Subjt: TGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHSRRKDTRRKTGENLDP
Query: NDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGL
NDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGL
Subjt: NDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGL
Query: SLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQF
SLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQF
Subjt: SLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQF
Query: MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK
MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK
Subjt: MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK
Query: RCCNSQGLGAYTNLLI
RCCNSQGLGAYTNLLI
Subjt: RCCNSQGLGAYTNLLI
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| XP_022926086.1 RNA polymerase sigma factor sigF, chloroplastic-like [Cucurbita moschata] | 6.3e-290 | 100 | Show/hide |
Query: MFHEQATPRCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSNN
MFHEQATPRCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSNN
Subjt: MFHEQATPRCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSNN
Query: TGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHSRRKDTRRKTGENLDP
TGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHSRRKDTRRKTGENLDP
Subjt: TGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHSRRKDTRRKTGENLDP
Query: NDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGL
NDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGL
Subjt: NDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGL
Query: SLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQF
SLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQF
Subjt: SLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQF
Query: MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK
MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK
Subjt: MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK
Query: RCCNSQGLGAYTNLLI
RCCNSQGLGAYTNLLI
Subjt: RCCNSQGLGAYTNLLI
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| XP_022978801.1 RNA polymerase sigma factor sigF, chloroplastic [Cucurbita maxima] | 2.8e-282 | 97.48 | Show/hide |
Query: MFHEQATPRCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSNN
MFHEQ TPRCFSTSFLSQEQHHECRPQSQILKDDRT QMTLD+RL+ RSVSIDEG QIDHDRLVWELKHQAVEWPGL+SSWPS QMGENKIAAIEKQSNN
Subjt: MFHEQATPRCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSNN
Query: TGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHSRRKDTRRKTGENLDP
TGREMLVK+EVENVIALAKKALSVSKQAASLVGKSELVGTN+D SSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVT+IHENHSRRKDTRRKTGENLDP
Subjt: TGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHSRRKDTRRKTGENLDP
Query: NDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGL
NDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGL
Subjt: NDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGL
Query: SLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQF
SLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAA VGITVEKLDKLQF
Subjt: SLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQF
Query: MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK
MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK
Subjt: MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK
Query: RCCNSQGLGAYTNLLI
RCCNSQGLGAYTNLLI
Subjt: RCCNSQGLGAYTNLLI
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| XP_023543698.1 RNA polymerase sigma factor sigF, chloroplastic [Cucurbita pepo subsp. pepo] | 5.5e-286 | 99.03 | Show/hide |
Query: MFHEQATPRCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSNN
MFHEQ TPRCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSNN
Subjt: MFHEQATPRCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSNN
Query: TGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHE-NHSRRKDTRRKTGENLD
TGREMLVKDEVENVIALAKKALSVSKQAASLV KSELVGTNLDCSSPEDSL KEGITVKSTRLQDRRSKKRKVPKHVTMIHE N+SRRKDTRRKTGENLD
Subjt: TGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHE-NHSRRKDTRRKTGENLD
Query: PNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRG
PNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRG
Subjt: PNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRG
Query: LSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQ
LSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQ
Subjt: LSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQ
Query: FMSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKL
FMSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKL
Subjt: FMSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKL
Query: KRCCNSQGLGAYTNLLI
KRCCNSQGLGAYTNLLI
Subjt: KRCCNSQGLGAYTNLLI
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| XP_038882876.1 RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida] | 4.1e-249 | 87.23 | Show/hide |
Query: MFHEQATP-RCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSN
MFHEQA P R FSTSFLSQEQHHECRPQSQILKDDRTSQ TLDRRLI RSVSIDEGN+ DHD L+WE KHQAVEWPGL+SSWPSLQM E KI+++EKQS
Subjt: MFHEQATP-RCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSN
Query: NTGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHE-NHSRRKDTRRKTGENL
N G EMLVKDE ENVIALAKKALS SKQAASLV +SELVGTNLD +SP+DSLSKEG TV+STRLQDRRSKKRKVPKHVT IHE ++S+ KD+RRKT EN
Subjt: NTGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHE-NHSRRKDTRRKTGENL
Query: DPNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGR
DPNDPLRLFLWGPET KLLT EEE++LIVQ+QDLMILDNVK RLQSQFGREPTLVEWAEALGLTCQRLQSQL SFR+SREKLINANLRMVVHIAK+YQGR
Subjt: DPNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGR
Query: GLSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKL
GLSL DLLQ GSLGLMKSVEKFK QAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAA VGITVE+LDKL
Subjt: GLSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKL
Query: QFMSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYK
FMSRIP+SLQQ VW DQDTTFQEITADSE+DTPD+SVERELMRRHIRNLL++L+ KER+IIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLE+RALYK
Subjt: QFMSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYK
Query: LKRCCNSQGLGAYTNLL
LKRC NSQGLGAY +LL
Subjt: LKRCCNSQGLGAYTNLL
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A1S4E3S8 RNA polymerase sigma factor sigF, chloroplastic isoform X1 | 2.4e-242 | 84.91 | Show/hide |
Query: MFHEQATP-RCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSN
MF EQA+P R FSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLI RSV IDEG++ DHD L+WELKHQAVEWP L+SSWPSLQM E KI++ EK+S
Subjt: MFHEQATP-RCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSN
Query: NTGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHE-NHSRRKDTRRKTGENL
N EMLVKDE ENVIALAKKALS SKQAA LV +SELVGT+LD SS +DSLSKEG TV+STRLQDRRSKKRKVPKHVT IHE ++ R KD+RRKT E
Subjt: NTGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHE-NHSRRKDTRRKTGENL
Query: DPNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGR
DPNDPLRLFLWGPET KLLTA+EE+ LIVQ+QDLMILDNVK +LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAK+Y GR
Subjt: DPNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGR
Query: GLSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKL
GLSLHDLLQ GSLGLMKSVEKFK QAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELAAHVGITVE+LDKL
Subjt: GLSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKL
Query: QFMSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYK
FMSRIP+SLQQ VWADQDTT+QEITADSEVDTPD+SVERELMRRHIRNLL++L+ KER+IIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLE+RALYK
Subjt: QFMSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYK
Query: LKRCCNSQGLGAYTNLL
LKRCCNSQGLGAY +LL
Subjt: LKRCCNSQGLGAYTNLL
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| A0A1S4E4I4 RNA polymerase sigma factor sigF, chloroplastic isoform X2 | 2.4e-242 | 84.91 | Show/hide |
Query: MFHEQATP-RCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSN
MF EQA+P R FSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLI RSV IDEG++ DHD L+WELKHQAVEWP L+SSWPSLQM E KI++ EK+S
Subjt: MFHEQATP-RCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSN
Query: NTGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHE-NHSRRKDTRRKTGENL
N EMLVKDE ENVIALAKKALS SKQAA LV +SELVGT+LD SS +DSLSKEG TV+STRLQDRRSKKRKVPKHVT IHE ++ R KD+RRKT E
Subjt: NTGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHE-NHSRRKDTRRKTGENL
Query: DPNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGR
DPNDPLRLFLWGPET KLLTA+EE+ LIVQ+QDLMILDNVK +LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAK+Y GR
Subjt: DPNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGR
Query: GLSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKL
GLSLHDLLQ GSLGLMKSVEKFK QAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELAAHVGITVE+LDKL
Subjt: GLSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKL
Query: QFMSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYK
FMSRIP+SLQQ VWADQDTT+QEITADSEVDTPD+SVERELMRRHIRNLL++L+ KER+IIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLE+RALYK
Subjt: QFMSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYK
Query: LKRCCNSQGLGAYTNLL
LKRCCNSQGLGAY +LL
Subjt: LKRCCNSQGLGAYTNLL
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| A0A6J1CRW8 RNA polymerase sigma factor sigF, chloroplastic | 2.1e-246 | 85.22 | Show/hide |
Query: MFHEQATP-RCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSN
M H+QATP R FSTSF+ QEQHHECRPQSQILKDD+TSQMTLDRRLI RSVSIDEG++I HD LVWELKHQA EWPGL+SSWPSLQMGE KI+++EKQ N
Subjt: MFHEQATP-RCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSN
Query: NTG-REMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLD---CSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHS-RRKDTRRKT
NT RE+LV+DE E+VIALAKKALS SKQAASLV +SELVGTN+D SS EDSL KEGI VKSTRLQDRRSK+R+VPKHVT IHE ++ R KDTRRKT
Subjt: NTG-REMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLD---CSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHS-RRKDTRRKT
Query: GENLDPNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKR
EN DPNDPLRLFLWGPET KLLT +EE++LIVQ+QDLMIL+NVK RLQSQFGREPTLVEWAEA+G+TCQ LQSQLH FRVSREKLINANLRMVVHIAK+
Subjt: GENLDPNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKR
Query: YQGRGLSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEK
YQGRGLSLHDLLQ GSLGLMKSVEKFK QAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKN+FVR GNYKPSKEELAAHVGITVE+
Subjt: YQGRGLSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEK
Query: LDKLQFMSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESR
LDKL FMSRIP+SLQQ VWADQDTTFQEITADSEVDTPD+SVERELMRRHIRNLL++L+ KER+IIRLR+GIEDGKEKTLLEIGNMFGLSKERVRQLE+R
Subjt: LDKLQFMSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESR
Query: ALYKLKRCCNSQGLGAYTNLL
ALYKLKRCCNSQGLGAY +LL
Subjt: ALYKLKRCCNSQGLGAYTNLL
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| A0A6J1EDW3 RNA polymerase sigma factor sigF, chloroplastic-like | 3.0e-290 | 100 | Show/hide |
Query: MFHEQATPRCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSNN
MFHEQATPRCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSNN
Subjt: MFHEQATPRCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSNN
Query: TGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHSRRKDTRRKTGENLDP
TGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHSRRKDTRRKTGENLDP
Subjt: TGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHSRRKDTRRKTGENLDP
Query: NDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGL
NDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGL
Subjt: NDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGL
Query: SLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQF
SLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQF
Subjt: SLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQF
Query: MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK
MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK
Subjt: MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK
Query: RCCNSQGLGAYTNLLI
RCCNSQGLGAYTNLLI
Subjt: RCCNSQGLGAYTNLLI
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| A0A6J1IP18 RNA polymerase sigma factor sigF, chloroplastic | 1.4e-282 | 97.48 | Show/hide |
Query: MFHEQATPRCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSNN
MFHEQ TPRCFSTSFLSQEQHHECRPQSQILKDDRT QMTLD+RL+ RSVSIDEG QIDHDRLVWELKHQAVEWPGL+SSWPS QMGENKIAAIEKQSNN
Subjt: MFHEQATPRCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSNN
Query: TGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHSRRKDTRRKTGENLDP
TGREMLVK+EVENVIALAKKALSVSKQAASLVGKSELVGTN+D SSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVT+IHENHSRRKDTRRKTGENLDP
Subjt: TGREMLVKDEVENVIALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHSRRKDTRRKTGENLDP
Query: NDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGL
NDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGL
Subjt: NDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGL
Query: SLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQF
SLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAA VGITVEKLDKLQF
Subjt: SLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQF
Query: MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK
MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK
Subjt: MSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK
Query: RCCNSQGLGAYTNLLI
RCCNSQGLGAYTNLLI
Subjt: RCCNSQGLGAYTNLLI
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| SwissProt top hits | e value | %identity | Alignment |
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| O22056 RNA polymerase sigma factor sigB | 6.1e-62 | 34.16 | Show/hide |
Query: IALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKE---GITVKSTRLQDRRSKK----RKVPKHVTMIHENHSRRKDTRRKTGENLDPNDPLRLF
+A++ + K AS K + + + L ++ + V+STR +R++++ K + + S +K +R + +D NDPLR
Subjt: IALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKE---GITVKSTRLQDRRSKK----RKVPKHVTMIHENHSRRKDTRRKTGENLDPNDPLRLF
Query: LWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGLSLHDLLQ
++KLLT EE +L +QDL+ L+ ++ L + GR+PT +WA A G+ + L+ ++H + ++K+I +N+R+V+ IAK YQG G++L DL+Q
Subjt: LWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGLSLHDLLQ
Query: VGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQFMSRIPQS
G GL++ EKF G +F+TYA+WWI+Q++RK++ + SR IRLP ++ +V EA+ P EE+A G+++++L + + P+S
Subjt: VGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQFMSRIPQS
Query: LQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQG
L Q + +Q+ E+ AD E T + + +E MR+ + +L+ L ++E+Q+IR RFG+EDG+ KTL EIG M G+S+ERVRQ+ES A KLK +
Subjt: LQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQG
Query: LGAY
L Y
Subjt: LGAY
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| P26683 RNA polymerase sigma factor SigA | 5.7e-60 | 38.61 | Show/hide |
Query: SRRKDTRRKTGENLDPNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINAN
SRR+ +K D +RL+L +LL A+EE +L ++ DL+ L+ V+ RL + R+P EWAEA+ L + +LH R +++K++ +N
Subjt: SRRKDTRRKTGENLDPNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINAN
Query: LRMVVHIAKRYQGRGLSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEEL
LR+VV IAK+Y RGLS DL+Q GSLGL+++ EKF + G +F+TYA WWIRQ+I +AI + SRTIRLP ++Y + ++ + + KP++EE+
Subjt: LRMVVHIAKRYQGRGLSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEEL
Query: AAHVGITVEKLDKLQFMSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLS
A + +T+EKL + +++P SL+ + ++D+ + +S+ +TP+ V + L+R + +L+ L+ +ER ++RLR+G++DG+ KTL EIG +F ++
Subjt: AAHVGITVEKLDKLQFMSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLS
Query: KERVRQLESRALYKLK
+ER+RQ+E++AL KL+
Subjt: KERVRQLESRALYKLK
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| P38023 RNA polymerase sigma factor SigA1 | 8.2e-59 | 39.33 | Show/hide |
Query: DPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGLS
D +RL+L +LL A+EE +L Q+ DL+ L+ ++ L Q R P+ EWA A+ + +L R +++K++ +NLR+VV IAK+Y RGLS
Subjt: DPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGLS
Query: LHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQFM
DL+Q GSLGL+++ EKF + G +F+TYA WWIRQ+I +AI + SRTIRLP ++Y + ++ + + KP++EE+A + +T+EKL +
Subjt: LHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQFM
Query: SRIPQSLQQTVWADQDTTFQE-ITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK
+++P SL+ + ++D+ + I AD E TP+ V + L+R + +L+ L+ +ER ++RLR+G++DG+ KTL EIG +F +++ER+RQ+E++AL KL+
Subjt: SRIPQSLQQTVWADQDTTFQE-ITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK
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| P52322 RNA polymerase sigma factor SigA | 4.4e-52 | 33.99 | Show/hide |
Query: SRRKDTRRKTGENLDPNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVK----VRLQSQFGRE-------------------------------
+RR+D RK D +R++L +LL AEEE +L ++ DL+ L+ ++ + +++G++
Subjt: SRRKDTRRKTGENLDPNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVK----VRLQSQFGRE-------------------------------
Query: ----PTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGLSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIF
P L EW + +L+ R ++EK++ +NLR+VV IAK+Y RGLS DL+Q GSLGL+++ EKF + G +F+TYA WWIRQ+I +AI
Subjt: ----PTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGLSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIF
Query: EHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQFMSRIPQSLQQTVWADQDTTFQE-ITADSEVDTPDISVERELMRRH
+ SRTIRLP ++Y + ++ + + KP++EE+A + +T+EKL + +++P SL+ + ++D+ + I AD E TP+ V + L+R
Subjt: EHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQFMSRIPQSLQQTVWADQDTTFQE-ITADSEVDTPDISVERELMRRH
Query: IRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK
+ N+L+ L+ +ER ++RLR+G++DG+ KTL EIG +F +++ER+RQ+E++AL KL+
Subjt: IRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLK
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| Q9LD95 RNA polymerase sigma factor sigF, chloroplastic | 5.6e-140 | 54.81 | Show/hide |
Query: HEQATPRCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSNNTG
H + R F S LSQE E RP S L+DDRTSQ+TL+RR VS E + + +L H W LIS S E K+ A+
Subjt: HEQATPRCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSNNTG
Query: REMLVKDEVENVIALAKKALSVSKQAASLVGKSEL-----VGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHSRRK-DTRRKTGE
L E+ +V+ALA+KALS SKQAA LV +E + +L SS SL ++G V+S R +RR+K R+ PK + E + +K ++K +
Subjt: REMLVKDEVENVIALAKKALSVSKQAASLVGKSEL-----VGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHSRRK-DTRRKTGE
Query: NLDPNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQ
D +D L+LFLWGPET +LLTA+EEA+LI +Q L+ L+ VK +L+SQ G EPT+ EWAEA+G++ L+S +H R SREKLI ANLR+VVHIAK+YQ
Subjt: NLDPNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQ
Query: GRGLSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLD
RGL+ DLLQ GS+GLMKSVEKFK Q+GCRFATYAYWWIRQSIRK+IF++SRTIRLPENVY LLGKV+EA+ V+ GNY+PSKEELA HVG++ EKLD
Subjt: GRGLSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLD
Query: KLQFMSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRAL
KL + +R P S+QQ +W+DQDTTFQEIT DS ++TP +SV ++LMR H+RNLLNVL+ KER+II+LRFGI+ GK+++L EIG ++GLSKERVRQLESRAL
Subjt: KLQFMSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRAL
Query: YKLKRCCNSQGLGAYTNLLI
Y+LK+ NS GL AY +LL+
Subjt: YKLKRCCNSQGLGAYTNLLI
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 4.3e-63 | 34.16 | Show/hide |
Query: IALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKE---GITVKSTRLQDRRSKK----RKVPKHVTMIHENHSRRKDTRRKTGENLDPNDPLRLF
+A++ + K AS K + + + L ++ + V+STR +R++++ K + + S +K +R + +D NDPLR
Subjt: IALAKKALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKE---GITVKSTRLQDRRSKK----RKVPKHVTMIHENHSRRKDTRRKTGENLDPNDPLRLF
Query: LWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGLSLHDLLQ
++KLLT EE +L +QDL+ L+ ++ L + GR+PT +WA A G+ + L+ ++H + ++K+I +N+R+V+ IAK YQG G++L DL+Q
Subjt: LWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGLSLHDLLQ
Query: VGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQFMSRIPQS
G GL++ EKF G +F+TYA+WWI+Q++RK++ + SR IRLP ++ +V EA+ P EE+A G+++++L + + P+S
Subjt: VGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLDKLQFMSRIPQS
Query: LQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQG
L Q + +Q+ E+ AD E T + + +E MR+ + +L+ L ++E+Q+IR RFG+EDG+ KTL EIG M G+S+ERVRQ+ES A KLK +
Subjt: LQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQG
Query: LGAY
L Y
Subjt: LGAY
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| AT1G64860.1 sigma factor A | 8.0e-33 | 29.21 | Show/hide |
Query: KKRKVPKHVTMIHENHSRRKDTRRKTG-------ENLDPNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGL
+K+K+P RR ++KT ++ +R ++ G + +L+ E +L +++ + LD+ K RL+ + G EP+ + A +L +
Subjt: KKRKVPKHVTMIHENHSRRKDTRRKTG-------ENLDPNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGL
Query: TCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGLSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLL
+ LQ+ L ++REKL +N+R+V+ IA+RY G + DL+Q G +GL++ +EKF G R +TY YWWIRQ + +A+ ++SRT+RLP +++ L
Subjt: TCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGLSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLL
Query: GKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKL-DKLQFMSRIPQSLQQTVWADQD----TTFQEITADSEVD-TPDISVERELMRRHIRNLLN-VLNS
G + AK G PS + +A + ++ +K+ + + +S++ SL + + + T AD+ ++ P + ++ + L++ L
Subjt: GKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKL-DKLQFMSRIPQSLQQTVWADQD----TTFQEITADSEVD-TPDISVERELMRRHIRNLLN-VLNS
Query: KERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGA
+E++IIRL +G+ D + T +I GLS+ERVRQ+ AL KLK + + A
Subjt: KERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGA
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| AT2G36990.1 RNApolymerase sigma-subunit F | 4.0e-141 | 54.81 | Show/hide |
Query: HEQATPRCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSNNTG
H + R F S LSQE E RP S L+DDRTSQ+TL+RR VS E + + +L H W LIS S E K+ A+
Subjt: HEQATPRCFSTSFLSQEQHHECRPQSQILKDDRTSQMTLDRRLIGRSVSIDEGNQIDHDRLVWELKHQAVEWPGLISSWPSLQMGENKIAAIEKQSNNTG
Query: REMLVKDEVENVIALAKKALSVSKQAASLVGKSEL-----VGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHSRRK-DTRRKTGE
L E+ +V+ALA+KALS SKQAA LV +E + +L SS SL ++G V+S R +RR+K R+ PK + E + +K ++K +
Subjt: REMLVKDEVENVIALAKKALSVSKQAASLVGKSEL-----VGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHSRRK-DTRRKTGE
Query: NLDPNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQ
D +D L+LFLWGPET +LLTA+EEA+LI +Q L+ L+ VK +L+SQ G EPT+ EWAEA+G++ L+S +H R SREKLI ANLR+VVHIAK+YQ
Subjt: NLDPNDPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQ
Query: GRGLSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLD
RGL+ DLLQ GS+GLMKSVEKFK Q+GCRFATYAYWWIRQSIRK+IF++SRTIRLPENVY LLGKV+EA+ V+ GNY+PSKEELA HVG++ EKLD
Subjt: GRGLSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAAHVGITVEKLD
Query: KLQFMSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRAL
KL + +R P S+QQ +W+DQDTTFQEIT DS ++TP +SV ++LMR H+RNLLNVL+ KER+II+LRFGI+ GK+++L EIG ++GLSKERVRQLESRAL
Subjt: KLQFMSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRAL
Query: YKLKRCCNSQGLGAYTNLLI
Y+LK+ NS GL AY +LL+
Subjt: YKLKRCCNSQGLGAYTNLLI
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| AT3G53920.1 RNApolymerase sigma-subunit C | 1.2e-36 | 26.4 | Show/hide |
Query: ALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHSRRKDTRRKTGENLDPNDPLRLFLWGPETTKLLTAE
A + K S S + D + D+ + + V S R+ KK+ VT + + S R T N+D R + + ++ +
Subjt: ALSVSKQAASLVGKSELVGTNLDCSSPEDSLSKEGITVKSTRLQDRRSKKRKVPKHVTMIHENHSRRKDTRRKTGENLDPNDPLRLFLWGPETTKLLTAE
Query: EEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGLSLHDLLQVGSLGLMKSVEKF
E ++ V+ + ++ ++ +L+ + G+ +L WA A G+ + L LH R++L+ + +V+ +A+ Y+G G++ DL+Q G +G+++ E+F
Subjt: EEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKRYQGRGLSLHDLLQVGSLGLMKSVEKF
Query: KQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYK-PSKEELAAHVGITVEKLDKLQFMSRIPQSLQQTVWADQDTT
G +F+TY +WIR+S+ + H+R + +P ++ + + +A+ + K + EE+A G +V+K+ ++ S+ + V T
Subjt: KQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYK-PSKEELAAHVGITVEKLDKLQFMSRIPQSLQQTVWADQDTT
Query: FQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTN
F E T D+ +++P+ +V R+ RR I +LL L +E+Q++ LR+G++D + K+L EIG + +SKE +R++E RA+ KL+ N++ L Y N
Subjt: FQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAYTN
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| AT5G13730.1 sigma factor 4 | 3.0e-40 | 32.27 | Show/hide |
Query: IHENHSRRKDTRRKTG-ENLDPN-----------DPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQ
I R++ RR+ G E L+P + + + + G + L+ EE +L + +++ L+N+ ++ E V A G +
Subjt: IHENHSRRKDTRRKTG-ENLDPN-----------DPLRLFLWGPETTKLLTAEEEAKLIVQVQDLMILDNVKVRLQSQFGREPTLVEWAEALGLTCQRLQ
Query: SQLHSFRVSREKLINANLRMVVHIAKRYQGRGLSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEA
L + +REK+ R+VV IA YQG+GL+L DL+Q GS+GL++ E+F G + +TY YWWI+Q+I +AI SR ++LP +++ L KV EA
Subjt: SQLHSFRVSREKLINANLRMVVHIAKRYQGRGLSLHDLLQVGSLGLMKSVEKFKQQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEA
Query: KNYFVRAGNYKPSKEELAAHVGITVEKLDKLQFMSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIE
N R +PS EE+A H+ + V + SR P SL + + T QEI + P+ V+RE M+ I LL L ++E +++ L FG+
Subjt: KNYFVRAGNYKPSKEELAAHVGITVEKLDKLQFMSRIPQSLQQTVWADQDTTFQEITADSEVDTPDISVERELMRRHIRNLLNVLNSKERQIIRLRFGIE
Query: DGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAY
+ EIG LS+ERVRQ+ AL KL+ N L Y
Subjt: DGKEKTLLEIGNMFGLSKERVRQLESRALYKLKRCCNSQGLGAY
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