CuGenDBv2

Gene ID	Carg10487
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Small nuclear ribonucleoprotein G
Genome location	Carg_Chr03:8535523..8537227
RNA-Seq Expression	Carg10487
Synteny	Carg10487
Gene Ontology terms	GO:0000387 - spliceosomal snRNP assembly (biological process) GO:0005682 - U5 snRNP (cellular component) GO:0005685 - U1 snRNP (cellular component) GO:0005686 - U2 snRNP (cellular component) GO:0005687 - U4 snRNP (cellular component) GO:0005689 - U12-type spliceosomal complex (cellular component) GO:0034719 - SMN-Sm protein complex (cellular component) GO:0043186 - P granule (cellular component) GO:0071004 - U2-type prespliceosome (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component) GO:0097526 - spliceosomal tri-snRNP complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR044641 - Sm-like protein Lsm7/SmG IPR034098 - Small nuclear ribonucleoprotein G IPR010920 - LSM domain superfamily IPR001163 - LSM domain, eukaryotic/archaea-type

Homology

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GenBank top hits

e value

%identity

Alignment

PON78023.1 Sm-like protein Lsm7/snRNP-G [Parasponia andersonii]

2.0e-33

93.75

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Query:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ
        MSR+GQPPDLKKYMDKKLQIKLN+NR+VVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVV+RGNSVVTVEALEPVNR Q
Subjt:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ

XP_003521472.1 probable small nuclear ribonucleoprotein G [Glycine max]

3.4e-33

96.15

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Query:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNR
        MSR+GQPPDLKKYMDKKLQIKLN+NR+VVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNR
Subjt:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNR

XP_004143329.1 probable small nuclear ribonucleoprotein G [Cucumis sativus]

1.2e-33

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Query:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ
        MSR+GQPPDLKKYMDKKLQIKLN+NRLV+GTLRGFDQFMNLVVDNTVEVNGNEK DIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ

XP_022925550.1 probable small nuclear ribonucleoprotein G [Cucurbita moschata]

3.6e-35

100

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Query:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ

XP_023517274.1 probable small nuclear ribonucleoprotein G [Cucurbita pepo subsp. pepo]

1.5e-33

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Query:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ
        MSR+GQPPDLKKYMDKKLQIK+N+NRLVVGTLRGFDQFMNLVVDNTVEVNGNEK DIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KHH9 Small nuclear ribonucleoprotein G

5.6e-34

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Query:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ
        MSR+GQPPDLKKYMDKKLQIKLN+NRLV+GTLRGFDQFMNLVVDNTVEVNGNEK DIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ

A0A1S3CHS7 Small nuclear ribonucleoprotein G

5.6e-34

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Query:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ
        MSR+GQPPDLKKYMDKKLQIKLN+NRLV+GTLRGFDQFMNLVVDNTVEVNGNEK DIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ

A0A5D3C6A2 Small nuclear ribonucleoprotein G

5.6e-34

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Query:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ
        MSR+GQPPDLKKYMDKKLQIKLN+NRLV+GTLRGFDQFMNLVVDNTVEVNGNEK DIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ

A0A6J1EIB6 Small nuclear ribonucleoprotein G

1.7e-35

100

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Query:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ

A0A6J1IMC2 Small nuclear ribonucleoprotein G

1.7e-35

100

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Query:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ

SwissProt top hits

e value

%identity

Alignment

O82221 Probable small nuclear ribonucleoprotein G

9.2e-34

89.74

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Query:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNR
        MSR+GQPPDLKKYMDKKLQIKLN+NR+V GTLRGFDQFMNLVVDNTVEVNGN+K DIGMVVIRGNS+VTVEALEPV R
Subjt:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNR

P24715 Probable small nuclear ribonucleoprotein G

3.3e-31

88.16

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Query:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV
        MS +GQPP LKKYMDK+LQI L +NR++VGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV
Subjt:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV

P62308 Small nuclear ribonucleoprotein G

9.3e-18

62.34

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Query:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKNDIGMVVIRGNSVVTVEALEPV
        MS+A  PP+LKK+MDKKL +KLN  R V G LRGFD FMNLV+D  VE+    ++N+IGMVVIRGNS++ +EALE V
Subjt:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKNDIGMVVIRGNSVVTVEALEPV

Q3ZBL0 Small nuclear ribonucleoprotein G

9.3e-18

62.34

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Query:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKNDIGMVVIRGNSVVTVEALEPV
        MS+A  PP+LKK+MDKKL +KLN  R V G LRGFD FMNLV+D  VE+    ++N+IGMVVIRGNS++ +EALE V
Subjt:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKNDIGMVVIRGNSVVTVEALEPV

Q9VXE0 Probable small nuclear ribonucleoprotein G

1.4e-18

63.64

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Query:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTV-EVNGNEKNDIGMVVIRGNSVVTVEALEPV
        MS+A  PP++KKYMDK++ +KLN  R V G LRGFD FMN+V+D+TV E   N KN+IGMVVIRGNS+V VEAL+ V
Subjt:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTV-EVNGNEKNDIGMVVIRGNSVVTVEALEPV

Arabidopsis top hits

e value

%identity

Alignment

AT2G03870.1 Small nuclear ribonucleoprotein family protein

6.8e-08

39.44

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Query:  DLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKNDIGMVVIRGNSVVTV
        DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V
Subjt:  DLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKNDIGMVVIRGNSVVTV

AT2G03870.2 Small nuclear ribonucleoprotein family protein

6.8e-08

39.44

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Query:  DLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKNDIGMVVIRGNSVVTV
        DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V
Subjt:  DLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKNDIGMVVIRGNSVVTV

AT2G23930.1 probable small nuclear ribonucleoprotein G

6.6e-35

89.74

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Query:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNR
        MSR+GQPPDLKKYMDKKLQIKLN+NR+V GTLRGFDQFMNLVVDNTVEVNGN+K DIGMVVIRGNS+VTVEALEPV R
Subjt:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNR

AT2G23930.2 probable small nuclear ribonucleoprotein G

3.9e-27

89.23

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Query:  MDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNR
        MDKKLQIKLN+NR+V GTLRGFDQFMNLVVDNTVEVNGN+K DIGMVVIRGNS+VTVEALEPV R
Subjt:  MDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNR

AT3G11500.1 Small nuclear ribonucleoprotein family protein

8.6e-35

89.74

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Query:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNR
        MSR+GQPPDLKKYMDKKLQIKLN+NR+VVGTLRGFDQFMNLVVDNTVEVNG++K DIGMVVIRGNS+VTVEALEPV R
Subjt:  MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNR

Sequences

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CDS sequence

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ATGAGTAGGGCAGGCCAGCCTCCGGATCTCAAAAAGTACATGGACAAGAAGCTCCAGATAAAACTCAATTCCAATCGGTTGGTAGTTGGAACTCTTCGTGGGTTTGACCA
ATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAGAAAAATGATATTGGCATGGTGGTTATCAGAGGCAATAGTGTGGTCACCGTTGAAGCACTTG
AACCTGTAAACAGAATGCAATGA

mRNA sequence

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CCATCTCTCCGTGTTCTGTTCTGCAAAAACCTTTCCACGTCTCTTTCGTTCGCTCTACACCATGAGTAGGGCAGGCCAGCCTCCGGATCTCAAAAAGTACATGGACAAGA
AGCTCCAGATAAAACTCAATTCCAATCGGTTGGTAGTTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAG
AAAAATGATATTGGCATGGTGGTTATCAGAGGCAATAGTGTGGTCACCGTTGAAGCACTTGAACCTGTAAACAGAATGCAATGATGGTGGATGTTGAAATTTAGTTCAAT
TCTTGCTGAATCTGTTTATAGATTGAGCGGGTAAATCCTTCGGAACTGTAGTATGTATAATTTTGTGATGTTATGGATTTTAGATGGAATTATTGTACCCCATTCTGGAC
ACGCGGATTATAAGTTCAAACAATGGGATTTCTGTATTATTGTGGGAGAAATTCATTGCATTTTGTTAGATCTTCTCACAAAACCTTTCGTTCTTCTCTGCTTCAGCATC
AATGTCCATGAACATTGCAATGAATGAATCCCTTATCAATTTAGATTCTGCAGATTGATCTTACTGTAAAGAATCCAAAATGAAATAGTGCCAGGATCGATCATTTGCCA
GACAACTTTGCTTTTTGCGTGTCTCCTGCACTTCATTGTAAGGTTTTGTGAAATCTCATCTCAGTTGGAGAGTGGAGAGTGGAACGAAACAGTTCTTATAAGGACGTGGA
TATCTCTTCCTAGTGATGCGTTTTAAAATCGTGTGGCTGACGGTAATATGTAATGGGTCAAAATAAACAATATCTATTAGCGATGTGTGTAAAGTATTACATGAAGGTAT
AAAGTCTGAGAAGTCAAAATTGATTCCAATTGGTTAGTGATGGATTTGGCTCTGGTTTGTTTAAAAAAAATGGTTTGTTCAAAATCAGTTTTGT

Protein sequence

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MSRAGQPPDLKKYMDKKLQIKLNSNRLVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRMQ

Carg10487 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome