; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg10492 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg10492
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionVacuolar protein sorting-associated protein 55-like protein
Genome locationCarg_Chr03:8511985..8513626
RNA-Seq ExpressionCarg10492
SyntenyCarg10492
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007262 - Vps55/LEPROT


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604338.1 Vacuolar protein sorting-associated protein 55-like protein, partial [Cucurbita argyrosperma subsp. sororia]3.1e-5699.12Show/hide
Query:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
        MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI+RDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
Subjt:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT

Query:  VLCFHRVSLEDDW
        VLCFHRVSLEDDW
Subjt:  VLCFHRVSLEDDW

KAG7034489.1 Vacuolar protein sorting-associated protein 55-like protein [Cucurbita argyrosperma subsp. argyrosperma]1.1e-56100Show/hide
Query:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
        MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
Subjt:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT

Query:  VLCFHRVSLEDDW
        VLCFHRVSLEDDW
Subjt:  VLCFHRVSLEDDW

XP_004143389.2 vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus]1.2e-5598.23Show/hide
Query:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
        MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI+RDGGGWIGAAKFLTGASTVGSLAIPIILRHA MIDTGAMFIEFVSFFIFVCT
Subjt:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT

Query:  VLCFHRVSLEDDW
        VLCFHRVSLEDDW
Subjt:  VLCFHRVSLEDDW

XP_023543153.1 vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita pepo subsp. pepo]3.1e-5699.12Show/hide
Query:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
        MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI+RDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
Subjt:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT

Query:  VLCFHRVSLEDDW
        VLCFHRVSLEDDW
Subjt:  VLCFHRVSLEDDW

XP_023543155.1 vacuolar protein sorting-associated protein 55 homolog isoform X2 [Cucurbita pepo subsp. pepo]3.1e-5699.12Show/hide
Query:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
        MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI+RDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
Subjt:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT

Query:  VLCFHRVSLEDDW
        VLCFHRVSLEDDW
Subjt:  VLCFHRVSLEDDW

TrEMBL top hitse value%identityAlignment
A0A0A0KHI6 Uncharacterized protein5.6e-5698.23Show/hide
Query:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
        MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI+RDGGGWIGAAKFLTGASTVGSLAIPIILRHA MIDTGAMFIEFVSFFIFVCT
Subjt:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT

Query:  VLCFHRVSLEDDW
        VLCFHRVSLEDDW
Subjt:  VLCFHRVSLEDDW

A0A1S3CHB4 vacuolar protein sorting-associated protein 55 homolog isoform X25.6e-5698.23Show/hide
Query:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
        MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI+RDGGGWIGAAKFLTGASTVGSLAIPIILRHA MIDTGAMFIEFVSFFIFVCT
Subjt:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT

Query:  VLCFHRVSLEDDW
        VLCFHRVSLEDDW
Subjt:  VLCFHRVSLEDDW

A0A1S3CIW0 vacuolar protein sorting-associated protein 55 homolog isoform X15.6e-5698.23Show/hide
Query:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
        MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI+RDGGGWIGAAKFLTGASTVGSLAIPIILRHA MIDTGAMFIEFVSFFIFVCT
Subjt:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT

Query:  VLCFHRVSLEDDW
        VLCFHRVSLEDDW
Subjt:  VLCFHRVSLEDDW

A0A6J1EDR9 vacuolar protein sorting-associated protein 55 homolog isoform X27.4e-5698.23Show/hide
Query:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
        MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI+RDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
Subjt:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT

Query:  VLCFHRVSLEDDW
        VLC HRVSLEDDW
Subjt:  VLCFHRVSLEDDW

A0A6J1EE43 vacuolar protein sorting-associated protein 55 homolog isoform X17.4e-5698.23Show/hide
Query:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
        MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI+RDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
Subjt:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT

Query:  VLCFHRVSLEDDW
        VLC HRVSLEDDW
Subjt:  VLCFHRVSLEDDW

SwissProt top hitse value%identityAlignment
P47111 Vacuolar protein sorting-associated protein 554.4e-0528.71Show/hide
Query:  LLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGS---TQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLC
        LL IL+CAL++N++PL   L+++L P+P   F  G+   T   ++         A FLTG      +A+P++  H Q+I   +  +  +   I   +++ 
Subjt:  LLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGS---TQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLC

Query:  F
        F
Subjt:  F

Q9AST6 Vacuolar protein sorting-associated protein 55 homolog2.6e-2655.88Show/hide
Query:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
        + S+ I+LQILACAL+NNWWP+LS +MYVL+PMP LFFGG  +  L       WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  
Subjt:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT

Query:  VL
        +L
Subjt:  VL

Q9UUH1 Vacuolar protein sorting-associated protein 553.7e-0426.17Show/hide
Query:  LLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQF-LITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFH
        +L IL+CAL+ NW+PLL  + ++L P+P L     ST    +  +    +   +F  GA+     A+PI+  +  +I T A  +  V   I    +  + 
Subjt:  LLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQF-LITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFH

Query:  RVSLEDD
        +  ++ +
Subjt:  RVSLEDD

Arabidopsis top hitse value%identityAlignment
AT1G32410.1 Vacuolar protein sorting 55 (VPS55) family protein1.9e-2755.88Show/hide
Query:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
        + S+ I+LQILACAL+NNWWP+LS +MYVL+PMP LFFGG  +  L       WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  
Subjt:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT

Query:  VL
        +L
Subjt:  VL

AT1G32410.2 Vacuolar protein sorting 55 (VPS55) family protein1.9e-2755.88Show/hide
Query:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
        + S+ I+LQILACAL+NNWWP+LS +MYVL+PMP LFFGG  +  L       WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  
Subjt:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT

Query:  VL
        +L
Subjt:  VL

AT1G32410.3 Vacuolar protein sorting 55 (VPS55) family protein1.9e-2755.88Show/hide
Query:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
        + S+ I+LQILACAL+NNWWP+LS +MYVL+PMP LFFGG  +  L       WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  
Subjt:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT

Query:  VL
        +L
Subjt:  VL

AT3G11530.1 Vacuolar protein sorting 55 (VPS55) family protein6.2e-5587.61Show/hide
Query:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
        MFSSSILLQILACA+Y NWWP+LSALMYV+VPMPC+FFGGGSTQFLI+RDGGGWI AAKFLTGASTVGSLAIPIILRHAQMI+TGAM IEF SFFIF+CT
Subjt:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT

Query:  VLCFHRVSLEDDW
        V+CFHR SL+DDW
Subjt:  VLCFHRVSLEDDW

AT3G11530.2 Vacuolar protein sorting 55 (VPS55) family protein6.2e-5587.61Show/hide
Query:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT
        MFSSSILLQILACA+Y NWWP+LSALMYV+VPMPC+FFGGGSTQFLI+RDGGGWI AAKFLTGASTVGSLAIPIILRHAQMI+TGAM IEF SFFIF+CT
Subjt:  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCT

Query:  VLCFHRVSLEDDW
        V+CFHR SL+DDW
Subjt:  VLCFHRVSLEDDW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTCTTCTAGCATCTTGCTACAGATTTTGGCTTGTGCACTATACAACAATTGGTGGCCTTTGCTATCAGCGTTGATGTACGTGCTCGTTCCAATGCCATGTTTATT
TTTTGGAGGCGGGTCGACGCAGTTTCTGATTACCCGAGATGGTGGAGGATGGATAGGTGCTGCTAAGTTCTTGACGGGAGCATCAACCGTTGGGAGTTTGGCAATTCCTA
TTATCCTGAGGCATGCTCAGATGATCGACACAGGAGCCATGTTCATAGAATTCGTTTCGTTCTTCATTTTTGTTTGCACTGTGTTGTGCTTCCACCGTGTTAGCCTTGAA
GATGATTGGTGA
mRNA sequenceShow/hide mRNA sequence
AATGATTCCAATTTCTAGCTTTGAGATATCAGTATATTTGTTAACTGTTCTTAACATGGTTGTTGGTCAATACTATATACCACTGCCCTTAGAGTTTCATTTAAACCATT
TGGTCCATTTGTTGCTCATTTTCGCCTTTAGATATATCTGTCATTTAACGTTAACTAATGTTCTTGATCTTCATCGGGCGGTGGCTCGTGCTGTTCGGGGAACATGGATG
GACCTCATTTCTGCAGTGTGAGTCGAATTTGTCAATACTCTGTAACCATAGTTCTGTTTTCTGATGTCTAACTTTATGAAAAAAATCTAAGAAAACATCCCTCGGTCGTG
CAGGTTAGCTGGGCTCGCGTTTATGTTTTCTTCTAGCATCTTGCTACAGATTTTGGCTTGTGCACTATACAACAATTGGTGGCCTTTGCTATCAGCGTTGATGTACGTGC
TCGTTCCAATGCCATGTTTATTTTTTGGAGGCGGGTCGACGCAGTTTCTGATTACCCGAGATGGTGGAGGATGGATAGGTGCTGCTAAGTTCTTGACGGGAGCATCAACC
GTTGGGAGTTTGGCAATTCCTATTATCCTGAGGCATGCTCAGATGATCGACACAGGAGCCATGTTCATAGAATTCGTTTCGTTCTTCATTTTTGTTTGCACTGTGTTGTG
CTTCCACCGTGTTAGCCTTGAAGATGATTGGTGATCCCATATTAATTCCAGAAGATTACAACAATTTCTTGTTTTAAATTTTAATGCGTTTCTTTTGAACAGTTGATAAC
AAGAAGAAACTTGCAGTGGGGGAAAGAAAACCGAGTTCTAAGTTTCTCATATGTAAATCAATCTAATGTATGATAGTAGTTCTCTTTTTTTCTTCTTTTCTTATTATGTT
CTATTAATGCTTGTGAATAGAAATAAATCAGTATTTGGT
Protein sequenceShow/hide protein sequence
MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLITRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFHRVSLE
DDW