; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg10544 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg10544
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L17
Genome locationCarg_Chr03:7550860..7554153
RNA-Seq ExpressionCarg10544
SyntenyCarg10544
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000456 - Ribosomal protein L17
IPR036373 - Ribosomal protein L17 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7034436.1 rplQ [Cucurbita argyrosperma subsp. argyrosperma]7.8e-82100Show/hide
Query:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI

XP_022947437.1 uncharacterized protein LOC111451296 [Cucurbita moschata]1.6e-7998.09Show/hide
Query:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRDAA R+SMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDS
        VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSD+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDS

XP_022949983.1 uncharacterized protein LOC111453209 [Cucurbita moschata]1.9e-8098.74Show/hide
Query:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRDAA+RVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYK RAGGYTRLLRTRIR
Subjt:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI

XP_022979157.1 uncharacterized protein LOC111478877 [Cucurbita maxima]8.1e-7996.86Show/hide
Query:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGR AA R+SMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGKEGSLCA+RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI

XP_023533917.1 uncharacterized protein LOC111795618 [Cucurbita pepo subsp. pepo]6.6e-8198.74Show/hide
Query:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRDAA R+SMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI

TrEMBL top hitse value%identityAlignment
A0A2N9GBE6 Uncharacterized protein2.7e-7288.68Show/hide
Query:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKL R    R+SM RTMVSQLVKHERIETTV KAKEIRRLADNMVQ GKEGSLCA+R AAAFVRGDDV+HKLFTELAYRYKDRAGGYTR+LRTRIR
Subjt:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPP PQPPQKAP+DPWTRSRLSKQFAPPKE +S+SEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI

A0A6J1BS83 uncharacterized protein LOC1110052803.4e-7592.45Show/hide
Query:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGR    R+SMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGKE SLCA+R AAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPPNPQP QKAP+DPWTRSRLSKQFAPPKEIKSDSE+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI

A0A6J1G6G2 uncharacterized protein LOC1114512967.9e-8098.09Show/hide
Query:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRDAA R+SMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDS
        VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSD+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDS

A0A6J1GDM4 uncharacterized protein LOC1114532099.3e-8198.74Show/hide
Query:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRDAA+RVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYK RAGGYTRLLRTRIR
Subjt:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI

A0A6J1IN09 uncharacterized protein LOC1114788773.9e-7996.86Show/hide
Query:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGR AA R+SMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGKEGSLCA+RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI

SwissProt top hitse value%identityAlignment
A0L5Z9 50S ribosomal protein L176.1e-2953.98Show/hide
Query:  RKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGD-DVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGD
        R+L RD + R +M++ M+  L KHERIETTVP+AKE+R +A+ ++  GK G L A R A + + GD +V+HKLFT+LA R KDR GGYTR+L+TR R GD
Subjt:  RKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGD-DVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGD

Query:  AAPMAYIEFIDRE
         APM++IE ++R+
Subjt:  AAPMAYIEFIDRE

A5FZU0 50S ribosomal protein L171.1e-2549.6Show/hide
Query:  RKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA
        RKLG  A+ R +M R M   L+KHE+I TT+PKAKE+R +A+ ++  GK G L A R A A +R D ++ KLF  LA RYK+R GGYTR+L+  +R GDA
Subjt:  RKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA

Query:  APMAYIEFIDRENELR-QSKPPNPQ
        A MA IE +DR+   + Q   P P+
Subjt:  APMAYIEFIDRENELR-QSKPPNPQ

B3E858 50S ribosomal protein L171.8e-2551.82Show/hide
Query:  RKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA
        R+LGR  + R++M R MV+ L+ HERI TT  KAKEIR +A+ M+  GK G L A R AAA++R   V+ KLF+ +A RYKDRAGGYTR+++   R+GDA
Subjt:  RKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA

Query:  APMAYIEFID
        A ++ IE ++
Subjt:  APMAYIEFID

Q749B4 50S ribosomal protein L173.1e-2541.89Show/hide
Query:  RKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA
        R+LGR  + R++M R MV+ L  HERI TT  KAKE+R +A+ M+  GK G L A R AA+++R   V+ KLF+ +A RYK+R GGYTR+++  IR GD 
Subjt:  RKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA

Query:  APMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKE
        AP++ IE ++ + E +  K     P Q     P          A P+E
Subjt:  APMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKE

Q8RE45 50S ribosomal protein L171.1e-2550Show/hide
Query:  FRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGD
        +RKLGR A  R +ML+ M   L+K ERIETTV +AKE+R+ A+ M+ FGK+ +L + R+A AF+R ++V+ K+F E+A +Y +R GGYTR+++T +R GD
Subjt:  FRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGD

Query:  AAPMAYIEFI
        +A MA IE +
Subjt:  AAPMAYIEFI

Arabidopsis top hitse value%identityAlignment
AT3G54210.1 Ribosomal protein L17 family protein2.8e-2145.37Show/hide
Query:  KLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAA
        KL R   QR ++LR + +QL+KH RI+TT  +A  +R+  D M+   K+GSL   R A  ++    ++H LF E+  RY +R GGYTR++RT  R GD A
Subjt:  KLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAA

Query:  PMAYIEFI
        PMAYIE +
Subjt:  PMAYIEFI

AT5G09770.1 Ribosomal protein L17 family protein6.6e-7183.75Show/hide
Query:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGR A  R+SMLRTMVSQLVKHERIETTV KAKE+RRLADNM+Q GKEGSL A+R AA FVRGDDVLHK+FTELA+RYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIK-SDSEI
        VGDAAPMAYIEFIDRENELRQSKP  PQPPQ+ P+DPW RSRL++QFAPPKE K  DSE+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIK-SDSEI

AT5G64650.1 Ribosomal protein L17 family protein1.2e-6981.25Show/hide
Query:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGR A  R+SMLRTMVSQLV+HERIETTV KAKE+RRLADNM+Q GKEGSL A+R AA FVRGDDVLHK+FTELA+RYKDRAGGYTR+LRTRIR
Subjt:  MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIK-SDSEI
        VGDAAPMAYIEFIDRENELRQSKP  PQPP + P+DPW RSRL++Q+APPKE K SDS++
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIK-SDSEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAAGTTCAGAAAGCTTGGTCGAGATGCAGCTCAACGGGTGTCTATGCTGAGAACAATGGTTTCTCAGTTGGTGAAGCACGAGCGGATTGAGACTACTGTTCCAAA
GGCTAAAGAAATTCGGCGGCTTGCTGATAACATGGTTCAATTTGGAAAAGAGGGTTCCCTTTGTGCTTCAAGGCATGCTGCTGCATTTGTAAGAGGCGATGATGTCCTTC
ACAAACTATTCACAGAACTGGCTTATCGATACAAAGATAGAGCTGGTGGATATACAAGACTTCTTCGGACGCGTATACGTGTTGGCGATGCTGCACCAATGGCTTATATA
GAATTTATTGATAGAGAAAATGAGCTGAGACAGTCGAAGCCTCCAAATCCCCAACCACCTCAGAAGGCTCCAATGGATCCATGGACAAGATCACGGCTTAGCAAGCAGTT
CGCACCACCCAAAGAGATCAAATCTGACTCTGAAATCTGA
mRNA sequenceShow/hide mRNA sequence
CCCCCCGAAACGAAACTCGAGGGTTTTTCATCTTCGAACTCAGTCTTTGCTTTCCTTCCGCCATTAACAATGACTAAGTTCAGAAAGCTTGGTCGAGATGCAGCTCAACG
GGTGTCTATGCTGAGAACAATGGTTTCTCAGTTGGTGAAGCACGAGCGGATTGAGACTACTGTTCCAAAGGCTAAAGAAATTCGGCGGCTTGCTGATAACATGGTTCAAT
TTGGAAAAGAGGGTTCCCTTTGTGCTTCAAGGCATGCTGCTGCATTTGTAAGAGGCGATGATGTCCTTCACAAACTATTCACAGAACTGGCTTATCGATACAAAGATAGA
GCTGGTGGATATACAAGACTTCTTCGGACGCGTATACGTGTTGGCGATGCTGCACCAATGGCTTATATAGAATTTATTGATAGAGAAAATGAGCTGAGACAGTCGAAGCC
TCCAAATCCCCAACCACCTCAGAAGGCTCCAATGGATCCATGGACAAGATCACGGCTTAGCAAGCAGTTCGCACCACCCAAAGAGATCAAATCTGACTCTGAAATCTGA
Protein sequenceShow/hide protein sequence
MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYI
EFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI