CuGenDBv2

Gene ID	Carg10626
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	F-box protein GID2-like
Genome location	Carg_Chr01:12243591..12244139
RNA-Seq Expression	Carg10626
Synteny	Carg10626
Gene Ontology terms	GO:0009740 - gibberellic acid mediated signaling pathway (biological process) GO:0009845 - seed germination (biological process) GO:0010162 - seed dormancy process (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR045118 - F-box only protein FBXO9/FBXO48

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6608444.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]

6.8e-98

99.45

Show/hide

Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRLVPDGDGERKMGKKLRVDSVDCE GGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

KAG7037780.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. argyrosperma]

9.5e-100

100

Show/hide

Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

XP_022941417.1 F-box protein GID2-like [Cucurbita moschata]

1.3e-96

98.35

Show/hide

Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRLVPDGDGERKMGKKLRVDSVDCE  GGGGGASDR GFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

XP_022982290.1 F-box protein GID2-like [Cucurbita maxima]

3.1e-98

98.91

Show/hide

Query:  MKRLVPDGDGERKMGKKLRVDSVDCE--GGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
        MKRLVPDGDGERKMGKKLRVDSVDCE  GGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCE--GGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL

Query:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

XP_023521607.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo]

8.3e-96

96.28

Show/hide

Query:  MKRLVPDGDGERKMGKKLRVDSVDCE-----GGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGN
        MKRLVPDGDGERKMGKKLRVDSVDCE     GGGGGGGASDRTGFVNLDDNLLFEV KHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGN
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCE-----GGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGN

Query:  QQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASA-SSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        QQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASA SSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  QQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASA-SSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2H5 F-box domain-containing protein

1.4e-80

81.91

Show/hide

Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKR+VPDG G+RKMGKK + ++ D   GGGG   SD+TGF+NLDDNLLFEVFKHVDA TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSS--------PWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR
        VVLALGGFRRLHSLFIWPLTKPQ+ S+S+S+SSSSSSS         WS FPAMIGSKPP RWGKDEVHLSLSLLSIRYYEKMNFSNR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSS--------PWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR

A0A6J1FA22 F-box protein GID2-like

9.0e-80

83.89

Show/hide

Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKR+VP+G G+RK  KK R  S DC+    GGG SD+TGF+NLDDNLLFEVFKHVDA TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR
        VVLALGGFRRLHSLFIWPLTKPQ+ S+S+++SS+SSSSPWS FPAMIGSKPP RWGKDEVHLSLSLLSIRYYEKMNFS+R
Subjt:  VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR

A0A6J1FMD6 F-box protein GID2-like

6.2e-97

98.35

Show/hide

Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRLVPDGDGERKMGKKLRVDSVDCE  GGGGGASDR GFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

A0A6J1ILD7 F-box protein GID2-like

2.0e-79

82.97

Show/hide

Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKR+VP+G G+RK  KK R  S DC+    GGG SD+TGF+NLDDNLLFEVFKHVDA TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQAPSTSAS--ASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR
        VVLALGGFRRLHSLFIWPLTKPQ+ S+S+S  +SS+SSSSPWS FPAMIGSKPP RWGKDEVHLSLSLLSIRYYEKMNF +R
Subjt:  VVLALGGFRRLHSLFIWPLTKPQAPSTSAS--ASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR

A0A6J1J293 F-box protein GID2-like

1.5e-98

98.91

Show/hide

Query:  MKRLVPDGDGERKMGKKLRVDSVDCE--GGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
        MKRLVPDGDGERKMGKKLRVDSVDCE  GGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCE--GGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL

Query:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

1.5e-26

42.48

Show/hide

Query:  GASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASAS
        G  ++    +L ++L+FEV +  +A TLA AACVS+ W + AEDERLWE  C R WAN G   +QLR+VVL+LGGFRRLH+++I PL             
Subjt:  GASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASAS

Query:  SSSSSSPW--STFPAMIGSK-PPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
               W  +  P   G + PP R G+D+V LSLSL SI +++ M    +D+
Subjt:  SSSSSSPW--STFPAMIGSK-PPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

Q9LUB6 F-box protein SNE

5.0e-11

29.63

Show/hide

Query:  VNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPW
        +N   ++L E+ + +D ++L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                      
Subjt:  VNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPW

Query:  STFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKM
             ++   P   W +D++ LSLSL  + YYE++
Subjt:  STFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKM

Q9STX3 F-box protein GID2

3.1e-45

52.17

Show/hide

Query:  MKRLVPD----GDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQ
        MKR   D    GD   +  KK++                +  GF NLD+NL++EV KHVDA TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  
Subjt:  MKRLVPD----GDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQ

Query:  QLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR
        QLRSVVLALGGFRRLHSL++WPL+KP                            P  R+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  QLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR

Arabidopsis top hits

e value

%identity

Alignment

AT1G21760.1 F-box protein 7

2.1e-04

Show/hide

Query:  LDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTG
        L D LLFEVF  +    L  A+CV ++W  T  +   W   C + W   G
Subjt:  LDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTG

AT4G24210.1 F-box family protein

2.2e-46

52.17

Show/hide

Query:  MKRLVPD----GDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQ
        MKR   D    GD   +  KK++                +  GF NLD+NL++EV KHVDA TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  
Subjt:  MKRLVPD----GDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQ

Query:  QLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR
        QLRSVVLALGGFRRLHSL++WPL+KP                            P  R+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  QLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR

AT5G48170.1 F-box family protein

3.6e-12

29.63

Show/hide

Query:  VNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPW
        +N   ++L E+ + +D ++L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                      
Subjt:  VNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPW

Query:  STFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKM
             ++   P   W +D++ LSLSL  + YYE++
Subjt:  STFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKM

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGCGACTTGTTCCTGATGGCGATGGGGAGCGGAAGATGGGGAAAAAACTCAGGGTGGACTCTGTGGATTGTGAAGGAGGAGGAGGAGGAGGAGGCGCCTCCGACAG
AACTGGGTTTGTCAATTTGGATGATAATTTGCTGTTTGAGGTTTTTAAGCATGTGGATGCGACGACTCTGGCTATGGCGGCGTGTGTCAGCAAGCAATGGCACAAAACGG
CGGAAGATGAGCGGCTTTGGGAGCTGATCTGTACCAGACACTGGGCCAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTAGCCCTCGGTGGCTTCCGTCGC
CTCCACTCGCTCTTCATCTGGCCTCTTACCAAGCCCCAAGCCCCCTCCACATCTGCCTCAGCTTCCTCATCATCGTCGTCGTCGCCTTGGTCTACGTTTCCGGCGATGAT
TGGGTCGAAGCCACCGACCCGTTGGGGGAAGGATGAGGTCCATCTCTCGCTCTCACTTCTCTCAATTCGGTACTACGAGAAGATGAATTTCAGCAACAGAGACGAATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRR
LHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

Carg10626 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome