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Carg10647 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg10647
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLIM domain-containing protein WLIM1-like
Genome locationCarg_Chr01:12146568..12147413
RNA-Seq ExpressionCarg10647
SyntenyCarg10647
Gene Ontology termsGO:0051017 - actin filament bundle assembly (biological process)
GO:0005886 - plasma membrane (cellular component)
GO:0015629 - actin cytoskeleton (cellular component)
GO:0046872 - metal ion binding (molecular function)
GO:0051015 - actin filament binding (molecular function)
InterPro domainsIPR001781 - Zinc finger, LIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591426.1 LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. sororia]4.1e-6292.06Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVA
        MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSL KSFEGTPKIGK  KPADSE+P AT+VA
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVA

Query:  SMFVGTKDKCLGCNNTVYPTEKVNVS
        SMFVGTKDKCLGC NTVYPTEKV+V+
Subjt:  SMFVGTKDKCLGCNNTVYPTEKVNVS

KAG7037759.1 LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-67100Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASM
        MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASM
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASM

Query:  FVGTKDKCLGCNNTVYPTEKVNVS
        FVGTKDKCLGCNNTVYPTEKVNVS
Subjt:  FVGTKDKCLGCNNTVYPTEKVNVS

XP_022936105.1 LIM domain-containing protein WLIM1 [Cucurbita moschata]4.1e-6292.06Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVA
        MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSL KSFEGTPKIGK  KPADSE+P AT+VA
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVA

Query:  SMFVGTKDKCLGCNNTVYPTEKVNVS
        SMFVGTKDKCLGC NTVYPTEKV+V+
Subjt:  SMFVGTKDKCLGCNNTVYPTEKVNVS

XP_022940134.1 LIM domain-containing protein WLIM1-like [Cucurbita moschata]6.1e-6699.19Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASM
        MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASM
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASM

Query:  FVGTKDKCLGCNNTVYPTEKVNV
        FVGTKDKCLGCNNTVYPTEKV V
Subjt:  FVGTKDKCLGCNNTVYPTEKVNV

XP_022982515.1 LIM domain-containing protein WLIM1-like [Cucurbita maxima]3.0e-6598.37Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASM
        MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSL KSFEGTPKIGKKPADSEKPAATRVASM
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASM

Query:  FVGTKDKCLGCNNTVYPTEKVNV
        FVGTKDKCLGCNNTVYPTEKV V
Subjt:  FVGTKDKCLGCNNTVYPTEKVNV

TrEMBL top hitse value%identityAlignment
A0A0A0L3T9 Uncharacterized protein9.9e-6291.27Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVA
        MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHC GTLKLSNYNSFEGVLYCRPHFDQLFKRTGSL KSFEGTPKIGK  KP DSEKP AT+VA
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVA

Query:  SMFVGTKDKCLGCNNTVYPTEKVNVS
        SMFVGTKDKCLGCN TVYPTEKV+V+
Subjt:  SMFVGTKDKCLGCNNTVYPTEKVNVS

A0A6J1FCP1 LIM domain-containing protein WLIM12.0e-6292.06Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVA
        MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSL KSFEGTPKIGK  KPADSE+P AT+VA
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVA

Query:  SMFVGTKDKCLGCNNTVYPTEKVNVS
        SMFVGTKDKCLGC NTVYPTEKV+V+
Subjt:  SMFVGTKDKCLGCNNTVYPTEKVNVS

A0A6J1FJ62 LIM domain-containing protein WLIM1-like3.0e-6699.19Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASM
        MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASM
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASM

Query:  FVGTKDKCLGCNNTVYPTEKVNV
        FVGTKDKCLGCNNTVYPTEKV V
Subjt:  FVGTKDKCLGCNNTVYPTEKVNV

A0A6J1IP16 LIM domain-containing protein WLIM1-like2.0e-6292.06Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVA
        MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSL KSFEGTPKIGK  KPADSE+P AT+VA
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVA

Query:  SMFVGTKDKCLGCNNTVYPTEKVNVS
        SMFVGTKDKCLGC NTVYPTEKV+V+
Subjt:  SMFVGTKDKCLGCNNTVYPTEKVNVS

A0A6J1J2W3 LIM domain-containing protein WLIM1-like1.5e-6598.37Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASM
        MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSL KSFEGTPKIGKKPADSEKPAATRVASM
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASM

Query:  FVGTKDKCLGCNNTVYPTEKVNV
        FVGTKDKCLGCNNTVYPTEKV V
Subjt:  FVGTKDKCLGCNNTVYPTEKVNV

SwissProt top hitse value%identityAlignment
O04193 LIM domain-containing protein WLIM2a1.8e-3656.45Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPK-IGKKPADSEKPAATRVAS
        M+F GT QKC AC+KTVY V+ L+AD   +HKACF+C HCK  L+LSNY+S EGV+YCRPHF+QLFK +GS +K+F+   K +  KP        +R+A 
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPK-IGKKPADSEKPAATRVAS

Query:  MFVGTKDKCLGCNNTVYPTEKVNV
        MF GT+DKC  C  TVYP EKV V
Subjt:  MFVGTKDKCLGCNNTVYPTEKVNV

O80839 LIM domain-containing protein PLIM2a3.4e-3552.85Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASM
        M+F GT  KC ACDKTVY++D LT +   +HK+CFRC HCKGTL +SNY+S +GVLYC+PHF+QLFK +G+ +K+F+      +KP D      ++++S 
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASM

Query:  FVGTKDKCLGCNNTVYPTEKVNV
        F GT+DKC  C  TVYP EKV +
Subjt:  FVGTKDKCLGCNNTVYPTEKVNV

P29675 Pollen-specific protein SF32.0e-4365.04Show/hide
Query:  AFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKI-GKKPADSEKPAATRVASM
        +F GTTQKC  C+KTVYLVDKL A+ RV+HKACFRCHHC  TLKLSN+NSF+GV+YCR HFDQLFKRTGSL KSF+GTPK   ++    E  +A R++S 
Subjt:  AFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKI-GKKPADSEKPAATRVASM

Query:  FVGTKDKCLGCNNTVYPTEKVNV
        F GT+DKC  C   VYP E+V V
Subjt:  FVGTKDKCLGCNNTVYPTEKVNV

Q1ECF5 LIM domain-containing protein PLIM2b5.8e-3551.18Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATR----
        M+F GT  KC  CDKTVY+VD L+ +   +HK+CFRC HCKGTL++SNY+S +GVLYC+ HF+QLFK +G+ +K+F+        P  +EKP  TR    
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATR----

Query:  VASMFVGTKDKCLGCNNTVYPTEKVNV
        ++S+F GT+DKC  C  TVYP EK+ +
Subjt:  VASMFVGTKDKCLGCNNTVYPTEKVNV

Q94JX5 LIM domain-containing protein WLIM11.7e-5881.75Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVA
        MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQ FKRTGSL KSFEGTPKIGK  +P + E+PA T+V+
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVA

Query:  SMFVGTKDKCLGCNNTVYPTEKVNVS
        +MF GT++KC+GC+ TVYP EKV+V+
Subjt:  SMFVGTKDKCLGCNNTVYPTEKVNVS

Arabidopsis top hitse value%identityAlignment
AT1G01780.1 GATA type zinc finger transcription factor family protein4.1e-3651.18Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATR----
        M+F GT  KC  CDKTVY+VD L+ +   +HK+CFRC HCKGTL++SNY+S +GVLYC+ HF+QLFK +G+ +K+F+        P  +EKP  TR    
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATR----

Query:  VASMFVGTKDKCLGCNNTVYPTEKVNV
        ++S+F GT+DKC  C  TVYP EK+ +
Subjt:  VASMFVGTKDKCLGCNNTVYPTEKVNV

AT1G10200.1 GATA type zinc finger transcription factor family protein1.2e-5981.75Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVA
        MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQ FKRTGSL KSFEGTPKIGK  +P + E+PA T+V+
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVA

Query:  SMFVGTKDKCLGCNNTVYPTEKVNVS
        +MF GT++KC+GC+ TVYP EKV+V+
Subjt:  SMFVGTKDKCLGCNNTVYPTEKVNVS

AT2G39900.1 GATA type zinc finger transcription factor family protein1.3e-3756.45Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPK-IGKKPADSEKPAATRVAS
        M+F GT QKC AC+KTVY V+ L+AD   +HKACF+C HCK  L+LSNY+S EGV+YCRPHF+QLFK +GS +K+F+   K +  KP        +R+A 
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPK-IGKKPADSEKPAATRVAS

Query:  MFVGTKDKCLGCNNTVYPTEKVNV
        MF GT+DKC  C  TVYP EKV V
Subjt:  MFVGTKDKCLGCNNTVYPTEKVNV

AT2G45800.1 GATA type zinc finger transcription factor family protein2.4e-3652.85Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASM
        M+F GT  KC ACDKTVY++D LT +   +HK+CFRC HCKGTL +SNY+S +GVLYC+PHF+QLFK +G+ +K+F+      +KP D      ++++S 
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASM

Query:  FVGTKDKCLGCNNTVYPTEKVNV
        F GT+DKC  C  TVYP EKV +
Subjt:  FVGTKDKCLGCNNTVYPTEKVNV

AT3G55770.1 GATA type zinc finger transcription factor family protein9.2e-3653.66Show/hide
Query:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASM
        M+F GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L+LS+Y+S EGVLYC+PHF+QLFK +GS  K+F+   K   K         +RVA  
Subjt:  MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASM

Query:  FVGTKDKCLGCNNTVYPTEKVNV
        F GT++KC  C+ TVYP EKV V
Subjt:  FVGTKDKCLGCNNTVYPTEKVNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTTCGCAGGAACCACCCAGAAGTGCATGGCTTGCGACAAGACTGTCTATTTGGTCGACAAGCTCACTGCCGACAATCGTGTCTTCCACAAAGCTTGCTTCCGCTG
CCACCACTGCAAAGGAACCCTCAAGTTAAGCAATTACAATTCGTTTGAAGGGGTTCTGTATTGCCGCCCACACTTCGATCAGCTCTTTAAAAGAACAGGAAGCTTAGCCA
AAAGCTTCGAAGGAACACCGAAGATTGGGAAGAAGCCAGCTGATTCTGAGAAACCAGCGGCGACCAGGGTTGCAAGCATGTTTGTCGGCACCAAAGACAAGTGCCTTGGC
TGTAACAACACTGTTTATCCGACCGAGAAGGTAAATGTGAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTTCGCAGGAACCACCCAGAAGTGCATGGCTTGCGACAAGACTGTCTATTTGGTCGACAAGCTCACTGCCGACAATCGTGTCTTCCACAAAGCTTGCTTCCGCTG
CCACCACTGCAAAGGAACCCTCAAGTTAAGCAATTACAATTCGTTTGAAGGGGTTCTGTATTGCCGCCCACACTTCGATCAGCTCTTTAAAAGAACAGGAAGCTTAGCCA
AAAGCTTCGAAGGAACACCGAAGATTGGGAAGAAGCCAGCTGATTCTGAGAAACCAGCGGCGACCAGGGTTGCAAGCATGTTTGTCGGCACCAAAGACAAGTGCCTTGGC
TGTAACAACACTGTTTATCCGACCGAGAAGGTAAATGTGAGCTGAAATGGACGAATAATTGTGGATTCAGAACACATCATTTGAAGCTTTGTTTCTCAGGTTTTAGTGGA
TGGAACCTCGTACCACAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCAAATTACATCGCACACG
Protein sequenceShow/hide protein sequence
MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLG
CNNTVYPTEKVNVS