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Carg10766 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg10766
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDEAD-box ATP-dependent RNA helicase
Genome locationCarg_Chr05:12159546..12160386
RNA-Seq ExpressionCarg10766
SyntenyCarg10766
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR011545 - DEAD/DEAH box helicase domain
IPR014014 - RNA helicase, DEAD-box type, Q motif
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599546.1 DEAD-box ATP-dependent RNA helicase 17, partial [Cucurbita argyrosperma subsp. sororia]3.6e-48100Show/hide
Query:  MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

KAG7030524.1 DEAD-box ATP-dependent RNA helicase 17 [Cucurbita argyrosperma subsp. argyrosperma]8.5e-50100Show/hide
Query:  MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTFC
        MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTFC
Subjt:  MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTFC

Query:  A
        A
Subjt:  A

XP_022946513.1 DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita moschata]1.0e-4798.99Show/hide
Query:  MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        MNEGMKTTTKKMVKEDEIFASCTFA+LGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

XP_022946514.1 DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita moschata]1.0e-4798.99Show/hide
Query:  MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        MNEGMKTTTKKMVKEDEIFASCTFA+LGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

XP_022975312.1 DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita maxima]3.4e-4696.97Show/hide
Query:  MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        MNE MKTTTKKMVKEDEIFASCTFA+LGLH TLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

TrEMBL top hitse value%identityAlignment
A0A0A0LKK2 Q_MOTIF domain-containing protein7.1e-4289.8Show/hide
Query:  NEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        NEG+KTTTKKMVKE E+FASCTFA+LGL +TLCD+LRDKMGFEVPTLVQAQAIPAILS RHVLVNAATGTGKTVAYLVPIIHHLQKS RR QRADGTF
Subjt:  NEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

A0A6J1G419 DEAD-box ATP-dependent RNA helicase 17 isoform X25.1e-4898.99Show/hide
Query:  MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        MNEGMKTTTKKMVKEDEIFASCTFA+LGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

A0A6J1G427 DEAD-box ATP-dependent RNA helicase 17 isoform X15.1e-4898.99Show/hide
Query:  MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        MNEGMKTTTKKMVKEDEIFASCTFA+LGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

A0A6J1ICQ6 DEAD-box ATP-dependent RNA helicase 17 isoform X21.6e-4696.97Show/hide
Query:  MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        MNE MKTTTKKMVKEDEIFASCTFA+LGLH TLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

A0A6J1IGD1 DEAD-box ATP-dependent RNA helicase 17 isoform X11.6e-4696.97Show/hide
Query:  MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        MNE MKTTTKKMVKEDEIFASCTFA+LGLH TLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Subjt:  MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

SwissProt top hitse value%identityAlignment
A6SNX1 ATP-dependent RNA helicase dbp95.6e-1251.39Show/hide
Query:  DEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQK
        D I  + TFA+LGL A L   +  K  F+ PTLVQ++AIP  L GR +L  A TG+GKT AYL+PI+H + K
Subjt:  DEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQK

Q0DLB9 DEAD-box ATP-dependent RNA helicase 174.7e-2758.51Show/hide
Query:  KTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        K+   K   ++ +FASC+F  LGLH TLC  L+DKMGF+ PT +QAQAIP  +SG+H+LV AATGTGKT+AYL PI+H LQ  + R++R DGTF
Subjt:  KTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

Q7XJN0 DEAD-box ATP-dependent RNA helicase 172.4e-2665.85Show/hide
Query:  IFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        +FASC+F++LGL   L D+L+++MGFE PTLVQAQAIP ILSGR VLVNA TGTGKT+AYL P+IHHLQ    ++ R+ GTF
Subjt:  IFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

Q86B47 Probable ATP-dependent RNA helicase CG86112.3e-1341.24Show/hide
Query:  EGMKTTTKKMVK--EDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADG
        E +K   ++ VK  ++ IF     +TLGLH      L D +     T VQ + IP +L G+ VLV + TG+GKT+AY +P++  LQK   RIQR DG
Subjt:  EGMKTTTKKMVK--EDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADG

Q9H8H2 Probable ATP-dependent RNA helicase DDX311.0e-1340Show/hide
Query:  EDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        ++++F S  F  LGLH  L   +   +     T VQ Q+IP +L GR  LV + TG+GKT+AY +P++  LQ  + +IQR+DG +
Subjt:  EDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

Arabidopsis top hitse value%identityAlignment
AT1G12770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.2e-1140.7Show/hide
Query:  NEGMKTTTKKMVKE--DEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHL
        N+ MK   +K   E    +F++ +F  LGL  +L D L ++ GF VPT VQ+ A+PAI+ G   ++ + TG+GKT+AYL+PI+  +
Subjt:  NEGMKTTTKKMVKE--DEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHL

AT1G59990.1 DEA(D/H)-box RNA helicase family protein1.2e-0944.83Show/hide
Query:  GMKTTTKKMVKE---DEIFASCT--FATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHL
        G  + T+  V++   D  FA  T  + +LGL   +   LRD  GF+ P+L QA  IP+ILSG+ V+V A TG+GKT  YL PII  L
Subjt:  GMKTTTKKMVKE---DEIFASCT--FATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHL

AT2G40700.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.7e-2765.85Show/hide
Query:  IFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
        +FASC+F++LGL   L D+L+++MGFE PTLVQAQAIP ILSGR VLVNA TGTGKT+AYL P+IHHLQ    ++ R+ GTF
Subjt:  IFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF

AT2G47330.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.6e-0938.27Show/hide
Query:  TFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHL--QKSDRRIQRADGTFCA
        TF   G  + +   ++ K  +E PT +Q QA+P +LSGR V+  A TG+GKT A+++P+I H+  Q   +R +   G  CA
Subjt:  TFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHL--QKSDRRIQRADGTFCA

AT4G34910.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.4e-1047.37Show/hide
Query:  KEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSD
        KE+E  A  +F  LGL + L   L  K G E PTL+Q  AIP IL G+ V+  A TG+GKT+AYL+P++  L  +D
Subjt:  KEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACGAAGGGATGAAAACAACGACGAAGAAAATGGTTAAAGAGGATGAGATTTTTGCTTCTTGTACTTTCGCCACCCTCGGTCTGCACGCTACTTTATGCGACGAACT
CCGAGATAAAATGGGTTTTGAAGTTCCTACGCTTGTACAGGCTCAAGCAATTCCGGCTATTTTATCTGGGCGTCATGTTCTTGTTAATGCGGCCACGGGCACTGGCAAAA
CTGTTGCGTATTTGGTTCCCATCATCCATCACTTGCAGAAGTCCGATCGTAGGATTCAGCGGGCCGATGGAACTTTCTGTGCGTAA
mRNA sequenceShow/hide mRNA sequence
ACGGAATCGCTGACGAAAATAAGCTGCCGTGAGAAACATTAGGGTGAAAGTTCGCCACACTCGGAACTTAGAAGCAGCCGCCCCGTAGTGCAGTCTGAGCTCCTGCGATC
AATAGCAGCATCAAAGTTATGAACGAAGGGATGAAAACAACGACGAAGAAAATGGTTAAAGAGGATGAGATTTTTGCTTCTTGTACTTTCGCCACCCTCGGTCTGCACGC
TACTTTATGCGACGAACTCCGAGATAAAATGGGTTTTGAAGTTCCTACGCTTGTACAGGCTCAAGCAATTCCGGCTATTTTATCTGGGCGTCATGTTCTTGTTAATGCGG
CCACGGGCACTGGCAAAACTGTTGCGTATTTGGTTCCCATCATCCATCACTTGCAGAAGTCCGATCGTAGGATTCAGCGGGCCGATGGAACTTTCTGTGCGTAA
Protein sequenceShow/hide protein sequence
MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTFCA