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Carg10784 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg10784
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein ELF4-LIKE 3-like
Genome locationCarg_Chr05:12089132..12089467
RNA-Seq ExpressionCarg10784
SyntenyCarg10784
Gene Ontology termsGO:0009649 - entrainment of circadian clock (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586485.1 Protein ELF4-LIKE 3, partial [Cucurbita argyrosperma subsp. sororia]1.4e-4082.05Show/hide
Query:  MEGETLSS-GGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNS-
        MEGET+SS GG+GNG Q++G M QTFQKNFVQVQ ILDQNR+LINEINQN ESKMP NL RNVGLIRELNNNIRRVVDLYAHLS SFTKSME SSEG+S 
Subjt:  MEGETLSS-GGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNS-

Query:  ----AAKPGHKRNRPPP
            AAKPGHKRNRPPP
Subjt:  ----AAKPGHKRNRPPP

KAG6599530.1 Protein ELF4-LIKE 3, partial [Cucurbita argyrosperma subsp. sororia]1.3e-46100Show/hide
Query:  MGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAAKPGHKRNRPP
        MGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAAKPGHKRNRPP
Subjt:  MGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAAKPGHKRNRPP

Query:  P
        P
Subjt:  P

XP_022946747.1 protein ELF4-LIKE 3-like [Cucurbita moschata]3.4e-52100Show/hide
Query:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAA
        MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAA
Subjt:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAA

Query:  KPGHKRNRPPP
        KPGHKRNRPPP
Subjt:  KPGHKRNRPPP

XP_023521403.1 protein ELF4-LIKE 3-like isoform X3 [Cucurbita pepo subsp. pepo]1.3e-5199.1Show/hide
Query:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAA
        MEGETLSSGGMGNGRQMDGKMA TFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAA
Subjt:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAA

Query:  KPGHKRNRPPP
        KPGHKRNRPPP
Subjt:  KPGHKRNRPPP

XP_038890489.1 protein ELF4-LIKE 3-like [Benincasa hispida]1.4e-4083.93Show/hide
Query:  MEGETLSSGGMGNG-RQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSA
        MEGETLSSGG+G G R+MDGKM QTFQKNFVQV+NILDQNRLLINEINQNHESKMP NL RNVGLIRELNNNIRRVVDLYA LS SFTKS++   +G+SA
Subjt:  MEGETLSSGGMGNG-RQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSA

Query:  AKPGHKRNRPPP
         KPGHKRNRPPP
Subjt:  AKPGHKRNRPPP

TrEMBL top hitse value%identityAlignment
A0A2C9W4E0 Elf4 domain-containing protein3.6e-3980.87Show/hide
Query:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSA-
        MEG+T S  G+GNG Q+DGK+ QTFQKNFVQVQNILDQNRLLINEINQNHESK+PDNL+RNVGLIRELNNNIRRVVDLYA LS+SFTKSMEASSEG+S+ 
Subjt:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSA-

Query:  -----AKPGHKRNRP
             AK GHKRNRP
Subjt:  -----AKPGHKRNRP

A0A5J5AWH1 Elf4 domain-containing protein1.1e-3880Show/hide
Query:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSA-
        MEGET S  G+GNG Q+DGK+ QTFQKNFVQVQNILDQNRLLINEINQNHESK+PDNL+RNVGLIRELNNNIRRVVDLY  LS+SFTKSMEASSEG+S+ 
Subjt:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSA-

Query:  -----AKPGHKRNRP
              K GHKRNRP
Subjt:  -----AKPGHKRNRP

A0A6J1G4K6 protein ELF4-LIKE 3-like1.7e-52100Show/hide
Query:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAA
        MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAA
Subjt:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAA

Query:  KPGHKRNRPPP
        KPGHKRNRPPP
Subjt:  KPGHKRNRPPP

A0A6J1HNV3 protein ELF4-LIKE 3-like4.3e-4080.34Show/hide
Query:  MEGETLSS-GGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNS-
        MEGET+SS GG+GNG Q++GKM QTFQKNFVQVQ ILDQNR+LIN+IN+N ESKMP NL RNVGLIREL+NNIRRVVDLYAHLS SFTKSME SSEG+S 
Subjt:  MEGETLSS-GGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNS-

Query:  ----AAKPGHKRNRPPP
            AAKPGHKRNRPPP
Subjt:  ----AAKPGHKRNRPPP

A0A6J1KJ14 protein ELF4-LIKE 3-like1.7e-52100Show/hide
Query:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAA
        MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAA
Subjt:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAA

Query:  KPGHKRNRPPP
        KPGHKRNRPPP
Subjt:  KPGHKRNRPPP

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 43.9e-1445Show/hide
Query:  DGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGN
        D  M +   +NF QVQ++LD+NR LI ++N NH+S+M DN+++NV LI+ELN NI +VV++Y+ L+ SF+        G+
Subjt:  DGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGN

O80877 Protein ELF4-LIKE 16.2e-1245.95Show/hide
Query:  DGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSME
        D ++  T    F + Q  LDQNR LI  +N+NH S++PDN++RNVGLI E+N NI +V+++Y+ LS +F K  +
Subjt:  DGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSME

Q570U6 Protein ELF4-LIKE 42.9e-3070.71Show/hide
Query:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSA
        MEG+ LS  G G+   MDGK+ Q+FQK+FV VQ+ILDQNRLLINEINQNHESK PDNL RNVGLI+ELNNNIRRV  LY  LS SF +S++ASSEG S+
Subjt:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSA

Q8S8F5 Protein ELF4-LIKE 31.5e-3472.48Show/hide
Query:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAA
        MEG+T+S   MG+G QMDGK+ QTF+K+FVQVQNILD NRLLINEINQNHESK+PDNL RNVGLIRELNNN+RRV  LY  LS +F+KSMEASSEG+S+ 
Subjt:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAA

Query:  KPGHKRNRP
          G++R RP
Subjt:  KPGHKRNRP

Q94BS8 Protein ELF4-LIKE 22.1e-2870.41Show/hide
Query:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNS
        MEG+  S  G G   QMDGK+ Q FQK+FVQVQ+ILDQNRLLINEINQNHESK  D+L RNVGLIRELNNNIR V  LY  LS SF +S++ASSEG S
Subjt:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNS

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 42.1e-3170.71Show/hide
Query:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSA
        MEG+ LS  G G+   MDGK+ Q+FQK+FV VQ+ILDQNRLLINEINQNHESK PDNL RNVGLI+ELNNNIRRV  LY  LS SF +S++ASSEG S+
Subjt:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSA

AT1G17455.2 ELF4-like 42.1e-3170.71Show/hide
Query:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSA
        MEG+ LS  G G+   MDGK+ Q+FQK+FV VQ+ILDQNRLLINEINQNHESK PDNL RNVGLI+ELNNNIRRV  LY  LS SF +S++ASSEG S+
Subjt:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSA

AT1G72630.1 ELF4-like 21.5e-2970.41Show/hide
Query:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNS
        MEG+  S  G G   QMDGK+ Q FQK+FVQVQ+ILDQNRLLINEINQNHESK  D+L RNVGLIRELNNNIR V  LY  LS SF +S++ASSEG S
Subjt:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNS

AT2G06255.1 ELF4-like 31.1e-3572.48Show/hide
Query:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAA
        MEG+T+S   MG+G QMDGK+ QTF+K+FVQVQNILD NRLLINEINQNHESK+PDNL RNVGLIRELNNN+RRV  LY  LS +F+KSMEASSEG+S+ 
Subjt:  MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAA

Query:  KPGHKRNRP
          G++R RP
Subjt:  KPGHKRNRP

AT2G40080.1 Protein of unknown function (DUF1313)2.7e-1545Show/hide
Query:  DGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGN
        D  M +   +NF QVQ++LD+NR LI ++N NH+S+M DN+++NV LI+ELN NI +VV++Y+ L+ SF+        G+
Subjt:  DGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGGGAGACATTGTCATCGGGAGGAATGGGGAATGGAAGGCAGATGGATGGGAAAATGGCTCAGACATTTCAGAAGAATTTCGTTCAAGTTCAGAACATTTTGGA
TCAAAACAGATTGCTGATCAATGAAATTAACCAAAATCACGAGTCCAAAATGCCCGACAACCTCGCCAGAAACGTGGGCTTGATTCGCGAGCTTAACAACAACATCAGAA
GGGTCGTTGATTTGTACGCCCATCTCTCTGCTTCCTTCACCAAATCCATGGAGGCCTCCTCCGAAGGAAACTCCGCCGCCAAGCCTGGCCACAAGCGCAACCGCCCTCCG
CCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGGGAGACATTGTCATCGGGAGGAATGGGGAATGGAAGGCAGATGGATGGGAAAATGGCTCAGACATTTCAGAAGAATTTCGTTCAAGTTCAGAACATTTTGGA
TCAAAACAGATTGCTGATCAATGAAATTAACCAAAATCACGAGTCCAAAATGCCCGACAACCTCGCCAGAAACGTGGGCTTGATTCGCGAGCTTAACAACAACATCAGAA
GGGTCGTTGATTTGTACGCCCATCTCTCTGCTTCCTTCACCAAATCCATGGAGGCCTCCTCCGAAGGAAACTCCGCCGCCAAGCCTGGCCACAAGCGCAACCGCCCTCCG
CCGTAG
Protein sequenceShow/hide protein sequence
MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAAKPGHKRNRPP
P