CuGenDBv2

Gene ID	Carg10791
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Photosystem II PsbX
Genome location	Carg_Chr05:12064661..12065029
RNA-Seq Expression	Carg10791
Synteny	Carg10791
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009523 - photosystem II (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0019904 - protein domain specific binding (molecular function)
InterPro domains	IPR009518 - Photosystem II PsbX

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0061475.1 membrane family protein [Cucumis melo var. makuwa]

1.5e-45

88.52

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Query:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSA+SMAMPITNA QKRAR  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAVAGL ATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
Subjt:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVAAILGAIIGVSNFDPVKRT
        VVV AILGA+IGV+NFDPVKRT
Subjt:  VVVAAILGAIIGVSNFDPVKRT

KAG7030501.1 hypothetical protein SDJN02_08848, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.9e-52

100

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Query:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
Subjt:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVAAILGAIIGVSNFDPVKRT
        VVVAAILGAIIGVSNFDPVKRT
Subjt:  VVVAAILGAIIGVSNFDPVKRT

XP_022946746.1 uncharacterized protein LOC111450721 [Cucurbita moschata]

1.2e-50

97.54

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Query:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSAVSMAMPITNATQKRAR+TDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGL ATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
Subjt:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVAAILGAIIGVSNFDPVKRT
        VVV AILGAIIGVSNFDPVKRT
Subjt:  VVVAAILGAIIGVSNFDPVKRT

XP_022999231.1 uncharacterized protein LOC111493667 [Cucurbita maxima]

4.2e-51

98.36

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Query:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSAVSMAMPITNATQKRAR+TDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGL ATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
Subjt:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVAAILGAIIGVSNFDPVKRT
        VVVAAILGAIIGVSNFDPVKRT
Subjt:  VVVAAILGAIIGVSNFDPVKRT

XP_038890010.1 uncharacterized protein LOC120079733 [Benincasa hispida]

4.1e-46

90.16

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Query:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSA+SMAMPITNA QKRAR  +AFAK LPLRPSNKP ASSNS AKFQVRASLKEKAVAGL ATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
Subjt:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVAAILGAIIGVSNFDPVKRT
        VVV AILGA+IGV+NFDPVKRT
Subjt:  VVVAAILGAIIGVSNFDPVKRT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIL7 Uncharacterized protein

6.3e-45

87.7

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Query:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSA+SMAMPITNA QKRAR  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAVAGL ATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGG
Subjt:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVAAILGAIIGVSNFDPVKRT
        VVV AILGA+IGV+NFDPVKRT
Subjt:  VVVAAILGAIIGVSNFDPVKRT

A0A1S3CAS0 uncharacterized protein LOC103498700

8.3e-45

86.89

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Query:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSA+SM MPITNA QKR R  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAVAGL ATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
Subjt:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVAAILGAIIGVSNFDPVKRT
        VVV AILGA+IGV+NFDPVKRT
Subjt:  VVVAAILGAIIGVSNFDPVKRT

A0A5A7V6L0 Membrane family protein

7.5e-46

88.52

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Query:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSA+SMAMPITNA QKRAR  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAVAGL ATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
Subjt:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVAAILGAIIGVSNFDPVKRT
        VVV AILGA+IGV+NFDPVKRT
Subjt:  VVVAAILGAIIGVSNFDPVKRT

A0A6J1G4H3 uncharacterized protein LOC111450721

5.9e-51

97.54

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Query:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSAVSMAMPITNATQKRAR+TDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGL ATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
Subjt:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVAAILGAIIGVSNFDPVKRT
        VVV AILGAIIGVSNFDPVKRT
Subjt:  VVVAAILGAIIGVSNFDPVKRT

A0A6J1KCH8 uncharacterized protein LOC111493667

2.0e-51

98.36

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Query:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSAVSMAMPITNATQKRAR+TDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGL ATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
Subjt:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVAAILGAIIGVSNFDPVKRT
        VVVAAILGAIIGVSNFDPVKRT
Subjt:  VVVAAILGAIIGVSNFDPVKRT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G06520.1 photosystem II subunit X

1.0e-26

54.1

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Query:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG
        MASTSA+S+  P+          +  F K LPL+PS    A+     + QV+A   +KA+ G++A ALTASMV+PE+AEAAG G+SPSLKNFLLSIA+GG
Subjt:  MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGG

Query:  VVVAAILGAIIGVSNFDPVKRT
        +V+  I+G ++GVSNFDPVKRT
Subjt:  VVVAAILGAIIGVSNFDPVKRT

Sequences

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CDS sequence

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ATGGCTTCAACTTCCGCAGTTTCAATGGCTATGCCAATTACTAATGCGACCCAGAAGAGAGCAAGGAACACCGACGCCTTCGCTAAGGCATTGCCTTTGAGGCCTTCCAA
CAAGCCAACCGCTTCATCAAACTCCAGAGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCACTGCTACTGCACTGACGGCCTCCATGGTGC
TTCCTGAGGTGGCTGAAGCTGCTGGGCCTGGAGTTAGTCCCTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCGCCGCTATCTTGGGTGCGATT
ATCGGCGTTTCCAATTTCGATCCGGTCAAGCGTACCTGA

mRNA sequence

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Protein sequence

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MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAI
IGVSNFDPVKRT

Carg10791 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome