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Carg10796 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg10796
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRibosomal protein L18ae family
Genome locationCarg_Chr05:12046078..12048831
RNA-Seq ExpressionCarg10796
SyntenyCarg10796
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599519.1 60S ribosomal protein L18a-like protein, partial [Cucurbita argyrosperma subsp. sororia]2.4e-68100Show/hide
Query:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
Subjt:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL
        SRRDPRERAGLAASSIAALACSVILLVVVAVRLL
Subjt:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL

XP_022946692.1 uncharacterized protein LOC111450686 [Cucurbita moschata]7.1e-6899.25Show/hide
Query:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQ KDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
Subjt:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL
        SRRDPRERAGLAASSIAALACSVILLVVVAVRLL
Subjt:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL

XP_022999414.1 uncharacterized protein LOC111493795 [Cucurbita maxima]6.0e-6797.76Show/hide
Query:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MDPNAKIDPTVQLVKSVSDRHLDLLRP+ARICSIFKGQ KDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
Subjt:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL
        SRRDPRERAGLAASSIAALACSVILLVVVAV LL
Subjt:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL

XP_023547144.1 uncharacterized protein LOC111806040 [Cucurbita pepo subsp. pepo]7.8e-6797.76Show/hide
Query:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MDPNAKIDPTVQLVK VSDRHLDLLRPSARICSIFKGQ KD+SDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
Subjt:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL
        SRRDPRERAGLAASSIAALACSVILLVVVAVRLL
Subjt:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL

XP_038889607.1 uncharacterized protein LOC120079478 [Benincasa hispida]1.8e-6392.48Show/hide
Query:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MDPN KID TVQLVKSVSD+HLDLLRPSARICSIFKGQ KDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN
Subjt:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  SRRDPRERAGLAASSIAALACSVILLVVVAVRL
        +RRDPRERAGLAAS+IAALACS+ILLVVVAV L
Subjt:  SRRDPRERAGLAASSIAALACSVILLVVVAVRL

TrEMBL top hitse value%identityAlignment
A0A0A0LKM2 Uncharacterized protein8.2e-6287.97Show/hide
Query:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MDPN K+D TVQLVKSVSD+HLDLLRPSARICSIFKGQ KDA DHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGF FP++WYYATILYFWN
Subjt:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  SRRDPRERAGLAASSIAALACSVILLVVVAVRL
        +RRDPRERAGLAAS+IAALACS++LL+VVAV L
Subjt:  SRRDPRERAGLAASSIAALACSVILLVVVAVRL

A0A1S3CAZ9 uncharacterized protein LOC1034986589.6e-6390.23Show/hide
Query:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MDPN K+D TVQLVKSVSD+HLDLLRPSARICSIFKGQ KDA DHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN
Subjt:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  SRRDPRERAGLAASSIAALACSVILLVVVAVRL
        +RRDPRERAGLAAS+IAALACS+ILL+VVAV L
Subjt:  SRRDPRERAGLAASSIAALACSVILLVVVAVRL

A0A5D3CGZ6 60S ribosomal protein L18a-19.6e-6390.23Show/hide
Query:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MDPN K+D TVQLVKSVSD+HLDLLRPSARICSIFKGQ KDA DHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN
Subjt:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  SRRDPRERAGLAASSIAALACSVILLVVVAVRL
        +RRDPRERAGLAAS+IAALACS+ILL+VVAV L
Subjt:  SRRDPRERAGLAASSIAALACSVILLVVVAVRL

A0A6J1G4J6 uncharacterized protein LOC1114506863.4e-6899.25Show/hide
Query:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQ KDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
Subjt:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL
        SRRDPRERAGLAASSIAALACSVILLVVVAVRLL
Subjt:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL

A0A6J1KAT7 uncharacterized protein LOC1114937952.9e-6797.76Show/hide
Query:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MDPNAKIDPTVQLVKSVSDRHLDLLRP+ARICSIFKGQ KDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
Subjt:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL
        SRRDPRERAGLAASSIAALACSVILLVVVAV LL
Subjt:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL

SwissProt top hitse value%identityAlignment
Q8L9S1 60S ribosomal protein L18a-like protein2.6e-0442.65Show/hide
Query:  LYDKPLPCFGCGIGWFSFLLGFLF-PVMWYYATILYFWNSRRDPRERAGLAASSIAALACSVILLVVV
        + +  LPC G G+GWF F++GFLF  + WY    +    S  D RE+AG  A SIA    SV+ L+ V
Subjt:  LYDKPLPCFGCGIGWFSFLLGFLF-PVMWYYATILYFWNSRRDPRERAGLAASSIAALACSVILLVVV

Arabidopsis top hitse value%identityAlignment
AT1G54217.1 Ribosomal protein L18ae family1.3e-2263.22Show/hide
Query:  RSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-SRRDPRERAGLAASSIAALACSVILLVVVAV
        + KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF+FP  WY AT LY  +   RDPRER+GLAAS+IAAL  SV L++ V V
Subjt:  RSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-SRRDPRERAGLAASSIAALACSVILLVVVAV

AT1G54217.2 Ribosomal protein L18ae family3.3e-2360.22Show/hide
Query:  DASDHIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-SRRDPRERAGLAASSIAALACSVILLVVVAV
        D  +  + KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF+FP  WY AT LY  +   RDPRER+GLAAS+IAAL  SV L++ V V
Subjt:  DASDHIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-SRRDPRERAGLAASSIAALACSVILLVVVAV

AT4G26060.1 Ribosomal protein L18ae family1.7e-3558.54Show/hide
Query:  DPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-SRRDPR
        D + +LVKSV+D+H  L+RP A+    +    KDA    + +YTL++DV++ + G+YDKPLPCFGCGIGWFSFLLGF+FP +WYYAT+LYF N  R+DPR
Subjt:  DPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-SRRDPR

Query:  ERAGLAASSIAALACSVILLVVV
        ERAGLAAS+I A+  S++LLV+V
Subjt:  ERAGLAASSIAALACSVILLVVV

AT5G57060.1 FUNCTIONS IN: molecular_function unknown8.4e-3554.41Show/hide
Query:  MDPNAKI---DPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILY
        MD N+K    +   +LVK ++DRH  L++ ++R  S      KDA    + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF+FP +WYYA  LY
Subjt:  MDPNAKI---DPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILY

Query:  FWN-SRRDPRERAGLAASSIAALACSVILLVVVAVR
        F N  R+DPRERAGLAAS+I A+  S++LLV+ A R
Subjt:  FWN-SRRDPRERAGLAASSIAALACSVILLVVVAVR

AT5G57060.2 BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1)2.1e-3064.89Show/hide
Query:  KDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-SRRDPRERAGLAASSIAALACSVILLVVVAVR
        KDA    + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF+FP +WYYA  LYF N  R+DPRERAGLAAS+I A+  S++LLV+ A R
Subjt:  KDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-SRRDPRERAGLAASSIAALACSVILLVVVAVR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCAAATGCAAAAATTGATCCGACTGTGCAACTGGTGAAATCGGTCTCTGATAGACATCTTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCAATCTTCAAAGG
CCAAGCAAAAGATGCTTCAGACCATATAAGGAGCAAGTACACACTTCTCAGAGATGTAGAGGATTCTCAAGTAGGGCTGTACGACAAGCCTCTTCCGTGTTTTGGCTGTG
GCATAGGATGGTTTTCCTTCCTCCTTGGGTTTTTGTTCCCAGTAATGTGGTACTATGCCACAATTCTGTACTTCTGGAATTCTCGTCGAGATCCAAGGGAACGAGCTGGA
TTAGCTGCGTCCTCCATTGCTGCACTTGCATGTTCGGTCATCTTGTTAGTCGTCGTAGCTGTTCGCTTATTATAG
mRNA sequenceShow/hide mRNA sequence
CGCACAAACAAGGGAGTCAATTTTCTCAGCGTTTGGCTGATGAGAGATGAAGTTGATCGTTGCTTGACGTTTAAATTTCTGGTCAGTTGAGGAAAAGCGTGTTCGTTTTT
TCACTCATCCGCCAATTCCATCTCTGATCATTGGAAACCCGGAGAAATTGCAGTTTCAGTGGATTCCATCCGCCCACCTCTTCATCTTTTCGGGTTTAGAAAGTGGATTC
TGCGAACTTGAAGAGTTCATCCTTCCATAAACATCAGCTTCAACATGGATCCAAATGCAAAAATTGATCCGACTGTGCAACTGGTGAAATCGGTCTCTGATAGACATCTT
GATCTTTTGAGGCCATCTGCCCGAATTTGTTCAATCTTCAAAGGCCAAGCAAAAGATGCTTCAGACCATATAAGGAGCAAGTACACACTTCTCAGAGATGTAGAGGATTC
TCAAGTAGGGCTGTACGACAAGCCTCTTCCGTGTTTTGGCTGTGGCATAGGATGGTTTTCCTTCCTCCTTGGGTTTTTGTTCCCAGTAATGTGGTACTATGCCACAATTC
TGTACTTCTGGAATTCTCGTCGAGATCCAAGGGAACGAGCTGGATTAGCTGCGTCCTCCATTGCTGCACTTGCATGTTCGGTCATCTTGTTAGTCGTCGTAGCTGTTCGC
TTATTATAGCCCCCTGATCTCCATGATTGACACTGCATTCTTAAATCCCTGTCCCCATGGGCGTTGGGGGCTTGGCAATGCAGTCTCAAACAGATCAGCTTCTGTGGATG
CAGCAGATAAAGACTAAAGAGCTCTGTTGCTTGACAAAGACAAGGGTGATTTCTGTTACTGTAAATGTTTACCAACCATATTTCAAAAGAGAATTGTCGGCGTATGTAAT
ACTACACTAAGAATACGTAATACATGGCCTTTTGAGTCCCTAAGATTTTAAAGCT
Protein sequenceShow/hide protein sequence
MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQAKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWNSRRDPRERAG
LAASSIAALACSVILLVVVAVRLL