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Carg10839 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg10839
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionE3 ubiquitin-protein ligase RING1-like
Genome locationCarg_Chr05:11852856..11854043
RNA-Seq ExpressionCarg10839
SyntenyCarg10839
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599476.1 E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia]1.9e-61100Show/hide
Query:  MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR
        MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR
Subjt:  MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR

Query:  CLISGQPPESPSSTLIRR
        CLISGQPPESPSSTLIRR
Subjt:  CLISGQPPESPSSTLIRR

KAG7030453.1 E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-84100Show/hide
Query:  MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR
        MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR
Subjt:  MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR

Query:  CLISGQPPESPSSTLIRRCSSVCGATCHNQVAQKVNHDLYGIECGGTIKLRKG
        CLISGQPPESPSSTLIRRCSSVCGATCHNQVAQKVNHDLYGIECGGTIKLRKG
Subjt:  CLISGQPPESPSSTLIRRCSSVCGATCHNQVAQKVNHDLYGIECGGTIKLRKG

XP_022946863.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]4.3e-6199.15Show/hide
Query:  MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR
        MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR
Subjt:  MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR

Query:  CLISGQPPESPSSTLIRR
        CLI+GQPPESPSSTLIRR
Subjt:  CLISGQPPESPSSTLIRR

XP_023545409.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]1.2e-6098.31Show/hide
Query:  MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR
        MAAVSVSAETTRNLA AYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR
Subjt:  MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR

Query:  CLISGQPPESPSSTLIRR
        CLI+GQPPESPSSTLIRR
Subjt:  CLISGQPPESPSSTLIRR

XP_038877422.1 E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]4.9e-4983.05Show/hide
Query:  MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR
        MAA +V  E TRNL A YPIEFLFDLDMVLSGADDFGCCQISA+DSLVADLP VVADVCAVCLEDF PDE GKQIPCGHVYHESCISSWL VA+CCPLCR
Subjt:  MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR

Query:  CLISGQPPESPSSTLIRR
        C ++GQPP+   STLIRR
Subjt:  CLISGQPPESPSSTLIRR

TrEMBL top hitse value%identityAlignment
A0A0A0LKR7 RING-type domain-containing protein4.2e-4677.97Show/hide
Query:  MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR
        MAA +V  E T NL + YPIEFLFDLD VLSGADD GCCQI+ SDS VAD PTVVADVCAVCL+DF PDE GKQIPCGHVYHESCISSWL VA+CCPLCR
Subjt:  MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR

Query:  CLISGQPPESPSSTLIRR
        CL++GQPP+   STLIRR
Subjt:  CLISGQPPESPSSTLIRR

A0A1S4DZX3 RING-H2 finger protein ATL5-like8.8e-4476.47Show/hide
Query:  MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGC-CQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLC
        MAA +V  E T  L + YPIEFLFDLD VLSGADD  C CQI+ SDS VAD PTVVADVCAVCL+DFRPDE GKQIPCGHVYHESCISSWL VA+CCPLC
Subjt:  MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGC-CQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLC

Query:  RCLISGQPPESPSSTLIRR
        RCL++GQPP+   STLIRR
Subjt:  RCLISGQPPESPSSTLIRR

A0A5A7V2P4 RING-H2 finger protein ATL5-like8.8e-4476.47Show/hide
Query:  MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGC-CQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLC
        MAA +V  E T  L + YPIEFLFDLD VLSGADD  C CQI+ SDS VAD PTVVADVCAVCL+DFRPDE GKQIPCGHVYHESCISSWL VA+CCPLC
Subjt:  MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGC-CQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLC

Query:  RCLISGQPPESPSSTLIRR
        RCL++GQPP+   STLIRR
Subjt:  RCLISGQPPESPSSTLIRR

A0A6J1DM93 E3 ubiquitin-protein ligase RHA1B-like1.5e-4378.26Show/hide
Query:  MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISA---SDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCP
        MAAV+V AETTRNLAAAYP+E LFDLDMVLSG DDFGCC ++A   SDS+VADLPTVVADVCAVC EDFR DE GKQIPCGHVYHE CISSWLAVA+CCP
Subjt:  MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISA---SDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCP

Query:  LCRCLISGQPPESPS
        LCR  +   PP S S
Subjt:  LCRCLISGQPPESPS

A0A6J1G511 E3 ubiquitin-protein ligase RING1-like2.1e-6199.15Show/hide
Query:  MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR
        MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR
Subjt:  MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR

Query:  CLISGQPPESPSSTLIRR
        CLI+GQPPESPSSTLIRR
Subjt:  CLISGQPPESPSSTLIRR

SwissProt top hitse value%identityAlignment
P0CH30 E3 ubiquitin-protein ligase RING16.7e-0943.14Show/hide
Query:  CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPE
        CAVC++DF    + KQ+PC H+YH+ C+  WL + N CP+CR  +    P+
Subjt:  CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPE

Q8LPN7 E3 ubiquitin-protein ligase RING1-like1.8e-0938.16Show/hide
Query:  ASDSLVADLPTVVA---------DVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPE
        AS S +  LPTV           + CAVC+++F    D KQ+PC HV+H+ C+  WL + N CP+CR  +    P+
Subjt:  ASDSLVADLPTVVA---------DVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPE

Q940T5 E3 ubiquitin-protein ligase RDUF26.7e-0936.99Show/hide
Query:  ASDSLVADLPTV-VADV-------CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQP
        AS S +  LP V ++D        CAVC E F  + + +++PC H++H+ CI  WL++ N CP+CR  +  +P
Subjt:  ASDSLVADLPTV-VADV-------CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQP

Q9SNB6 E3 ubiquitin-protein ligase RDUF11.5e-0838.57Show/hide
Query:  SASDSL----VADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQP
        SA +SL    ++D  T     CAVC E F    +G+++PC H++H  CI  WL++ N CP+CR  +   P
Subjt:  SASDSL----VADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQP

Q9VHI7 E3 ubiquitin-protein ligase Iruka2.0e-0847.62Show/hide
Query:  CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR
        C++C +DF+ DE  +++PC H+YHE+CI  WL + + CP+CR
Subjt:  CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR

Arabidopsis top hitse value%identityAlignment
AT1G68180.1 RING/U-box superfamily protein1.1e-1148.15Show/hide
Query:  LVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR
        ++ D   V   VCA+C E+F   E+GK++ C H+YH SCI SWL + N CP+CR
Subjt:  LVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR

AT3G19950.1 RING/U-box superfamily protein1.3e-1038.16Show/hide
Query:  ASDSLVADLPTVVA---------DVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPE
        AS S +  LPTV           + CAVC+++F    D KQ+PC HV+H+ C+  WL + N CP+CR  +    P+
Subjt:  ASDSLVADLPTVVA---------DVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPE

AT3G46620.1 zinc finger (C3HC4-type RING finger) family protein1.1e-0938.57Show/hide
Query:  SASDSL----VADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQP
        SA +SL    ++D  T     CAVC E F    +G+++PC H++H  CI  WL++ N CP+CR  +   P
Subjt:  SASDSL----VADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQP

AT3G60080.1 RING/U-box superfamily protein8.2e-1053.49Show/hide
Query:  VCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR
        +CAVC EDF   E  +++PC H+YH  CI  WL+  N CPLCR
Subjt:  VCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR

AT5G59550.1 zinc finger (C3HC4-type RING finger) family protein4.8e-1036.99Show/hide
Query:  ASDSLVADLPTV-VADV-------CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQP
        AS S +  LP V ++D        CAVC E F  + + +++PC H++H+ CI  WL++ N CP+CR  +  +P
Subjt:  ASDSLVADLPTV-VADV-------CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCCGTTTCTGTGTCGGCTGAGACTACGCGAAACTTAGCAGCGGCCTATCCAATTGAATTTCTGTTTGACCTCGACATGGTTCTGTCCGGCGCCGACGACTTCGG
TTGCTGTCAGATCAGCGCTTCGGATTCCCTTGTGGCGGATTTGCCGACGGTGGTGGCCGATGTTTGTGCCGTTTGTTTGGAAGATTTCCGGCCAGATGAGGACGGAAAAC
AAATCCCCTGCGGACACGTGTACCACGAATCTTGTATTTCCTCTTGGCTCGCCGTCGCCAACTGTTGCCCTCTCTGTCGGTGCCTCATCTCCGGTCAACCGCCGGAATCG
CCTTCTTCAACTTTGATCCGACGTTGTTCGTCAGTTTGTGGAGCAACGTGTCACAATCAAGTGGCCCAGAAGGTCAATCATGACTTGTATGGTATTGAGTGTGGCGGCAC
CATTAAGTTAAGGAAAGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCCGTTTCTGTGTCGGCTGAGACTACGCGAAACTTAGCAGCGGCCTATCCAATTGAATTTCTGTTTGACCTCGACATGGTTCTGTCCGGCGCCGACGACTTCGG
TTGCTGTCAGATCAGCGCTTCGGATTCCCTTGTGGCGGATTTGCCGACGGTGGTGGCCGATGTTTGTGCCGTTTGTTTGGAAGATTTCCGGCCAGATGAGGACGGAAAAC
AAATCCCCTGCGGACACGTGTACCACGAATCTTGTATTTCCTCTTGGCTCGCCGTCGCCAACTGTTGCCCTCTCTGTCGGTGCCTCATCTCCGGTCAACCGCCGGAATCG
CCTTCTTCAACTTTGATCCGACGTTGTTCGTCAGTTTGTGGAGCAACGTGTCACAATCAAGTGGCCCAGAAGGTCAATCATGACTTGTATGGTATTGAGTGTGGCGGCAC
CATTAAGTTAAGGAAAGGGTAA
Protein sequenceShow/hide protein sequence
MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPES
PSSTLIRRCSSVCGATCHNQVAQKVNHDLYGIECGGTIKLRKG