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Carg10872 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg10872
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHeavy metal transport/detoxification superfamily protein
Genome locationCarg_Chr05:11636619..11637966
RNA-Seq ExpressionCarg10872
SyntenyCarg10872
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR006121 - Heavy metal-associated domain, HMA
IPR036163 - Heavy metal-associated domain superfamily
IPR044526 - Protein SODIUM POTASSIUM ROOT DEFECTIVE 1/2/3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7030420.1 Protein SODIUM POTASSIUM ROOT DEFECTIVE 1, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-65100Show/hide
Query:  MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKT
        MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKT
Subjt:  MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKT

Query:  VVVTGDVSSFEVIQCVSKVRSVEILEPQE
        VVVTGDVSSFEVIQCVSKVRSVEILEPQE
Subjt:  VVVTGDVSSFEVIQCVSKVRSVEILEPQE

XP_022946348.1 protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 [Cucurbita moschata]1.2e-6499.22Show/hide
Query:  MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKT
        MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQ NPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKT
Subjt:  MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKT

Query:  VVVTGDVSSFEVIQCVSKVRSVEILEPQE
        VVVTGDVSSFEVIQCVSKVRSVEILEPQE
Subjt:  VVVTGDVSSFEVIQCVSKVRSVEILEPQE

XP_022946349.1 uncharacterized protein LOC111450448 isoform X2 [Cucurbita moschata]8.4e-4298.86Show/hide
Query:  MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEG
        MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQ NPKVVELRVSMHCNGCARRVEKNIGKIEG
Subjt:  MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEG

XP_022999545.1 protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X1 [Cucurbita maxima]1.6e-6195.35Show/hide
Query:  MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKT
        MGKAVGIGKVFSCFMNS ASSSCF+IE TFEPKQPLMPNQPNSHLLR NDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEGVDS+KVDFERKT
Subjt:  MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKT

Query:  VVVTGDVSSFEVIQCVSKVRSVEILEPQE
        VVVTGDVSSFEVIQCVSKVRSVEILE QE
Subjt:  VVVTGDVSSFEVIQCVSKVRSVEILEPQE

XP_022999546.1 uncharacterized protein LOC111493873 isoform X2 [Cucurbita maxima]3.5e-4095.45Show/hide
Query:  MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEG
        MGKAVGIGKVFSCFMNS ASSSCF+IE TFEPKQPLMPNQPNSHLLR NDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEG
Subjt:  MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEG

TrEMBL top hitse value%identityAlignment
A0A5A7V1Y2 Copper-binding family protein3.2e-3159.59Show/hide
Query:  MGKAV-GIGKVFSCFMNS--GASSSC----FQIEAT--FEPKQPLMPNQPNS---HLLRLNDVISHTNQ-----QTNPKVVELRVSMHCNGCARRVEKNI
        MGK V  IGKVFSCF+N+   +S+SC    F+IE +  F+ KQPLM  Q  S    LL   DVI+H N+     Q NPKVV +RVSMHCNGCARRVEK I
Subjt:  MGKAV-GIGKVFSCFMNS--GASSSC----FQIEAT--FEPKQPLMPNQPNS---HLLRLNDVISHTNQ-----QTNPKVVELRVSMHCNGCARRVEKNI

Query:  GKIEGVDSYKVDFERKTVVVTGDVSSFEVIQCVSKVRSVEILEPQE
         KI+GV+S+KVD ER+ VVVTGDV  FEV++C+SKV+SVEILE Q+
Subjt:  GKIEGVDSYKVDFERKTVVVTGDVSSFEVIQCVSKVRSVEILEPQE

A0A6J1G3J1 protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X15.8e-6599.22Show/hide
Query:  MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKT
        MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQ NPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKT
Subjt:  MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKT

Query:  VVVTGDVSSFEVIQCVSKVRSVEILEPQE
        VVVTGDVSSFEVIQCVSKVRSVEILEPQE
Subjt:  VVVTGDVSSFEVIQCVSKVRSVEILEPQE

A0A6J1G3J3 uncharacterized protein LOC111450448 isoform X24.1e-4298.86Show/hide
Query:  MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEG
        MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQ NPKVVELRVSMHCNGCARRVEKNIGKIEG
Subjt:  MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEG

A0A6J1KDD7 uncharacterized protein LOC111493873 isoform X21.7e-4095.45Show/hide
Query:  MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEG
        MGKAVGIGKVFSCFMNS ASSSCF+IE TFEPKQPLMPNQPNSHLLR NDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEG
Subjt:  MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEG

A0A6J1KFP0 protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like isoform X17.9e-6295.35Show/hide
Query:  MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKT
        MGKAVGIGKVFSCFMNS ASSSCF+IE TFEPKQPLMPNQPNSHLLR NDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEGVDS+KVDFERKT
Subjt:  MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKT

Query:  VVVTGDVSSFEVIQCVSKVRSVEILEPQE
        VVVTGDVSSFEVIQCVSKVRSVEILE QE
Subjt:  VVVTGDVSSFEVIQCVSKVRSVEILEPQE

SwissProt top hitse value%identityAlignment
B3H6D0 Heavy metal-associated isoprenylated plant protein 451.2e-0642.86Show/hide
Query:  VVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKTVVVTGDVSSFEVIQCVSK
        +VEL V M C GC ++V + I K++GVD+ ++D +R+ V VTG V   EV++ V +
Subjt:  VVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKTVVVTGDVSSFEVIQCVSK

Q58FZ0 Protein SODIUM POTASSIUM ROOT DEFECTIVE 21.0e-1041.54Show/hide
Query:  TNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKTVVVTGDVSSFEVIQCVSKVRSVE
        T+ +VV L+VS+HC GC  +V K++ +++GV S+ +DF  K V VTGD++  E++  +SKV++ +
Subjt:  TNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKTVVVTGDVSSFEVIQCVSKVRSVE

Q8LDS4 Protein SODIUM POTASSIUM ROOT DEFECTIVE 15.5e-1239.36Show/hide
Query:  FEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKTVVVTGDVSSFEVIQCVSKVRSVE
        F P  P  P+ P S     +         ++ +VV LRVS+HC GCA +V+K++ K++GV SY +DF  K V VTGDV+   V+  +SKV++ +
Subjt:  FEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKTVVVTGDVSSFEVIQCVSKVRSVE

Q8RXH8 Protein SODIUM POTASSIUM ROOT DEFECTIVE 37.9e-1145.59Show/hide
Query:  KVVELRVSMHCN--GCARRVEKNIGKIEGVDSYKVDFERKTVVVTGDVSSFEVIQCVSKVRSVEILEP
        +VV LRVS+HC+  GC  +V+K++ K++GV S+ +DF  K V VTGD++  EV+ C+SKV++ +   P
Subjt:  KVVELRVSMHCN--GCARRVEKNIGKIEGVDSYKVDFERKTVVVTGDVSSFEVIQCVSKVRSVEILEP

Q94BT9 Copper transport protein ATX14.5e-0643.86Show/hide
Query:  KVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKTVVVTGDVSSFEVIQCVSK
        + V LRV+M C GC   V++ +GK+EGV+S+ VD + + V V G+V    V+Q V+K
Subjt:  KVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKTVVVTGDVSSFEVIQCVSK

Arabidopsis top hitse value%identityAlignment
AT2G37390.1 Chloroplast-targeted copper chaperone protein7.4e-1241.54Show/hide
Query:  TNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKTVVVTGDVSSFEVIQCVSKVRSVE
        T+ +VV L+VS+HC GC  +V K++ +++GV S+ +DF  K V VTGD++  E++  +SKV++ +
Subjt:  TNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKTVVVTGDVSSFEVIQCVSKVRSVE

AT3G24450.1 Heavy metal transport/detoxification superfamily protein4.3e-2039.42Show/hide
Query:  MGKAVGIGKVFSCFMNSGASSSCFQI------EATFEPKQPLMPN--QPNSHLLRLNDVISHTNQQT-----NPKVVELRVSMHCNGCARRVEKNIGKIE
        MGK   IG+V+ C        SCF +      E  FE K+PL+ +  + +  ++RL DV++  ++QT      PK+VEL+VSMHC GCA++VEK+I K++
Subjt:  MGKAVGIGKVFSCFMNSGASSSCFQI------EATFEPKQPLMPN--QPNSHLLRLNDVISHTNQQT-----NPKVVELRVSMHCNGCARRVEKNIGKIE

Query:  GVDSYKVDFERKTVVVTGDVSSFEVIQCVSKVRSVEI
        GV  YKV+ E K VVV G++   +V++ + KV++ ++
Subjt:  GVDSYKVDFERKTVVVTGDVSSFEVIQCVSKVRSVEI

AT3G53530.1 Chloroplast-targeted copper chaperone protein5.6e-1245.59Show/hide
Query:  KVVELRVSMHCN--GCARRVEKNIGKIEGVDSYKVDFERKTVVVTGDVSSFEVIQCVSKVRSVEILEP
        +VV LRVS+HC+  GC  +V+K++ K++GV S+ +DF  K V VTGD++  EV+ C+SKV++ +   P
Subjt:  KVVELRVSMHCN--GCARRVEKNIGKIEGVDSYKVDFERKTVVVTGDVSSFEVIQCVSKVRSVEILEP

AT5G02600.1 Heavy metal transport/detoxification superfamily protein3.9e-1339.36Show/hide
Query:  FEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKTVVVTGDVSSFEVIQCVSKVRSVE
        F P  P  P+ P S     +         ++ +VV LRVS+HC GCA +V+K++ K++GV SY +DF  K V VTGDV+   V+  +SKV++ +
Subjt:  FEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKTVVVTGDVSSFEVIQCVSKVRSVE

AT5G02600.2 Heavy metal transport/detoxification superfamily protein3.9e-1339.36Show/hide
Query:  FEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKTVVVTGDVSSFEVIQCVSKVRSVE
        F P  P  P+ P S     +         ++ +VV LRVS+HC GCA +V+K++ K++GV SY +DF  K V VTGDV+   V+  +SKV++ +
Subjt:  FEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKTVVVTGDVSSFEVIQCVSKVRSVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAGGCGGTGGGCATTGGGAAAGTGTTTTCGTGTTTCATGAATTCCGGAGCTTCCAGTTCGTGCTTCCAAATCGAAGCCACTTTTGAGCCCAAACAGCCATTAAT
GCCTAACCAACCTAACTCACACCTTCTCAGACTCAACGATGTGATCTCTCATACCAACCAACAAACCAACCCCAAGGTGGTGGAGCTGAGGGTGTCAATGCATTGTAATG
GCTGTGCCAGAAGGGTTGAGAAGAACATCGGCAAGATAGAAGGCGTGGATTCATATAAGGTAGATTTTGAAAGGAAGACGGTTGTGGTTACGGGAGATGTTTCTAGTTTT
GAAGTTATACAATGCGTTTCTAAAGTGAGAAGCGTAGAGATTCTCGAACCTCAAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAAGGCGGTGGGCATTGGGAAAGTGTTTTCGTGTTTCATGAATTCCGGAGCTTCCAGTTCGTGCTTCCAAATCGAAGCCACTTTTGAGCCCAAACAGCCATTAAT
GCCTAACCAACCTAACTCACACCTTCTCAGACTCAACGATGTGATCTCTCATACCAACCAACAAACCAACCCCAAGGTGGTGGAGCTGAGGGTGTCAATGCATTGTAATG
GCTGTGCCAGAAGGGTTGAGAAGAACATCGGCAAGATAGAAGGCGTGGATTCATATAAGGTAGATTTTGAAAGGAAGACGGTTGTGGTTACGGGAGATGTTTCTAGTTTT
GAAGTTATACAATGCGTTTCTAAAGTGAGAAGCGTAGAGATTCTCGAACCTCAAGAATGA
Protein sequenceShow/hide protein sequence
MGKAVGIGKVFSCFMNSGASSSCFQIEATFEPKQPLMPNQPNSHLLRLNDVISHTNQQTNPKVVELRVSMHCNGCARRVEKNIGKIEGVDSYKVDFERKTVVVTGDVSSF
EVIQCVSKVRSVEILEPQE