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Carg11012 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11012
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionS-protein homolog
Genome locationCarg_Chr08:6139373..6139804
RNA-Seq ExpressionCarg11012
SyntenyCarg11012
Gene Ontology termsGO:0060320 - rejection of self pollen (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593795.1 S-protein-like 5, partial [Cucurbita argyrosperma subsp. sororia]1.3e-72100Show/hide
Query:  ASFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKSFDAFKVPRDFYRCGIF
        ASFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKSFDAFKVPRDFYRCGIF
Subjt:  ASFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKSFDAFKVPRDFYRCGIF

Query:  KKCSWLVREDGFYFSPDEVNWKKDFQW
        KKCSWLVREDGFYFSPDEVNWKKDFQW
Subjt:  KKCSWLVREDGFYFSPDEVNWKKDFQW

KAG7026123.1 S-protein-like 20, partial [Cucurbita argyrosperma subsp. argyrosperma]6.6e-80100Show/hide
Query:  MKKKILNVILLLLFVSASFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKS
        MKKKILNVILLLLFVSASFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKS
Subjt:  MKKKILNVILLLLFVSASFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKS

Query:  FDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW
        FDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW
Subjt:  FDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW

XP_022964484.1 S-protein homolog 5-like [Cucurbita moschata]1.6e-7899.31Show/hide
Query:  MKKKILNVILLLLFVSA-SFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRK
        MKKKILNVILLLLFVSA SFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRK
Subjt:  MKKKILNVILLLLFVSA-SFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRK

Query:  SFDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW
        SFDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW
Subjt:  SFDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW

XP_023000578.1 S-protein homolog 5 [Cucurbita maxima]4.7e-7898.61Show/hide
Query:  MKKKILNVILLLLFVSA-SFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRK
        MKKKILN ILLLLFVSA SFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRK
Subjt:  MKKKILNVILLLLFVSA-SFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRK

Query:  SFDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW
        SFDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW
Subjt:  SFDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW

XP_023515117.1 S-protein homolog 5-like [Cucurbita pepo subsp. pepo]2.3e-7796.53Show/hide
Query:  MKKKILNVILLLLFVSA-SFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRK
        MKKKILN I+LLLF+SA SFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTK+WNTNQFCCTMKWDAKRK
Subjt:  MKKKILNVILLLLFVSA-SFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRK

Query:  SFDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW
        SFDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW
Subjt:  SFDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW

TrEMBL top hitse value%identityAlignment
A0A0A0LNI8 S-protein homolog1.0e-6288.62Show/hide
Query:  IFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKSFDAFKVPRDFYRCGIFKKCS
        +FIIQPDRLYLHGVV+EVRVINGF NNSSLPLVIWCSSK++DLGGRALQEHDDFSW+VTTKLW +NQF CTMKWDAKR+SFDAFKVPRDFYRCG FKKCS
Subjt:  IFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKSFDAFKVPRDFYRCGIFKKCS

Query:  WLVREDGFYFSPDEVNWKKDFQW
        WLV EDGFYFS DE+NWKKDFQW
Subjt:  WLVREDGFYFSPDEVNWKKDFQW

A0A1S4E2Y6 S-protein homolog8.1e-6885.31Show/hide
Query:  KKKILNVILLLLFVSA-SFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKS
        KKK L  ILLL   SA SF +FI+QPDRLYLHGV++EVRVINGF NNSSLPLVIWCSSK+SDLGGRALQEHDDFSW+VTTKLW +NQF CTMKWDAKRKS
Subjt:  KKKILNVILLLLFVSA-SFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKS

Query:  FDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW
        FDAFKVPRDFYRCG FKKCSWLV EDGFYFSPDE+NWKKDFQW
Subjt:  FDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW

A0A5D3CZS1 S-protein homolog8.1e-6885.31Show/hide
Query:  KKKILNVILLLLFVSA-SFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKS
        KKK L  ILLL   SA SF +FI+QPDRLYLHGV++EVRVINGF NNSSLPLVIWCSSK+SDLGGRALQEHDDFSW+VTTKLW +NQF CTMKWDAKRKS
Subjt:  KKKILNVILLLLFVSA-SFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKS

Query:  FDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW
        FDAFKVPRDFYRCG FKKCSWLV EDGFYFSPDE+NWKKDFQW
Subjt:  FDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW

A0A6J1HNC1 S-protein homolog7.8e-7999.31Show/hide
Query:  MKKKILNVILLLLFVSA-SFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRK
        MKKKILNVILLLLFVSA SFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRK
Subjt:  MKKKILNVILLLLFVSA-SFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRK

Query:  SFDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW
        SFDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW
Subjt:  SFDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW

A0A6J1KN10 S-protein homolog2.3e-7898.61Show/hide
Query:  MKKKILNVILLLLFVSA-SFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRK
        MKKKILN ILLLLFVSA SFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRK
Subjt:  MKKKILNVILLLLFVSA-SFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRK

Query:  SFDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW
        SFDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW
Subjt:  SFDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW

SwissProt top hitse value%identityAlignment
F4JLQ5 S-protein homolog 26.5e-0631.33Show/hide
Query:  SSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKSFDAFKVPRDF---YRCGIFKKCSWLVREDG
        + L L+  C SKD DLG R LQ  + +S+    + +    + C+  W  +  SFD +K  RD     +C    +C W +R +G
Subjt:  SSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKSFDAFKVPRDF---YRCGIFKKCSWLVREDG

Arabidopsis top hitse value%identityAlignment
AT1G26798.1 Plant self-incompatibility protein S1 family6.9e-1136.56Show/hide
Query:  VRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKSFDAFKVPRD---FYRCGIFKKCSWLVREDG
        V +IN  T N    LV+ C +K  DLG  AL+  +   +R    L  T  + CT  W    K+FD F+V RD      CGI ++C W + E G
Subjt:  VRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKSFDAFKVPRD---FYRCGIFKKCSWLVREDG

AT3G24060.1 Plant self-incompatibility protein S1 family5.2e-4356.94Show/hide
Query:  KKKILNVILLLLFVSAS-FFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWN-TNQFCCTMKWDAKRK
        +K I+ ++ +L+ +S +  F  ++QP  ++L G  ++VRVIN F +NSSLPLVIWC+S   DLGGRALQE DDF W     LW+   ++ CTMKWD+KRK
Subjt:  KKKILNVILLLLFVSAS-FFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWN-TNQFCCTMKWDAKRK

Query:  SFDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW
         F+AFKV RD  RCG  KKCSW VREDGFYFS DEV W KDF W
Subjt:  SFDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW

AT4G16195.1 Plant self-incompatibility protein S1 family4.6e-0731.33Show/hide
Query:  SSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKSFDAFKVPRDF---YRCGIFKKCSWLVREDG
        + L L+  C SKD DLG R LQ  + +S+    + +    + C+  W  +  SFD +K  RD     +C    +C W +R +G
Subjt:  SSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKSFDAFKVPRDF---YRCGIFKKCSWLVREDG

AT5G04350.1 Plant self-incompatibility protein S1 family5.0e-0932.97Show/hide
Query:  LVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKSFDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQ
        L + C SKD DLG   L+   D+ +     +W T  F C M      K    F      +   +   C W+ REDG YFS D V   K +Q
Subjt:  LVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKSFDAFKVPRDFYRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGAAAATTCTGAACGTCATTCTCCTCCTCCTCTTCGTCTCAGCATCCTTCTTCATATTCATCATCCAACCAGACAGACTATACCTACACGGTGTCGTTTACGA
GGTTCGGGTCATCAATGGCTTCACCAACAATTCATCTTTGCCTTTGGTCATATGGTGTTCTTCAAAAGACAGCGATTTAGGTGGGAGGGCGTTGCAAGAACACGATGATT
TCAGCTGGAGAGTCACAACCAAGCTGTGGAACACCAACCAATTCTGTTGTACAATGAAATGGGATGCCAAAAGGAAGTCTTTTGATGCGTTTAAGGTTCCTAGGGACTTC
TACCGATGTGGGATTTTCAAGAAATGTTCTTGGTTGGTTAGGGAAGATGGCTTCTACTTTAGCCCTGATGAGGTTAATTGGAAGAAGGATTTTCAGTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGAAAATTCTGAACGTCATTCTCCTCCTCCTCTTCGTCTCAGCATCCTTCTTCATATTCATCATCCAACCAGACAGACTATACCTACACGGTGTCGTTTACGA
GGTTCGGGTCATCAATGGCTTCACCAACAATTCATCTTTGCCTTTGGTCATATGGTGTTCTTCAAAAGACAGCGATTTAGGTGGGAGGGCGTTGCAAGAACACGATGATT
TCAGCTGGAGAGTCACAACCAAGCTGTGGAACACCAACCAATTCTGTTGTACAATGAAATGGGATGCCAAAAGGAAGTCTTTTGATGCGTTTAAGGTTCCTAGGGACTTC
TACCGATGTGGGATTTTCAAGAAATGTTCTTGGTTGGTTAGGGAAGATGGCTTCTACTTTAGCCCTGATGAGGTTAATTGGAAGAAGGATTTTCAGTGGTGA
Protein sequenceShow/hide protein sequence
MKKKILNVILLLLFVSASFFIFIIQPDRLYLHGVVYEVRVINGFTNNSSLPLVIWCSSKDSDLGGRALQEHDDFSWRVTTKLWNTNQFCCTMKWDAKRKSFDAFKVPRDF
YRCGIFKKCSWLVREDGFYFSPDEVNWKKDFQW