CuGenDBv2

Gene ID	Carg11025
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	small EDRK-rich factor 2-like
Genome location	Carg_Chr08:6030585..6031221
RNA-Seq Expression	Carg11025
Synteny	Carg11025
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR007513 - Uncharacterised protein family SERF, N-terminal IPR040211 - Small EDRK-rich factor 1/2

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033303.1 small EDRK-rich factor 2 [Cucumis melo var. makuwa]

5.8e-18

88.24

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Query:  SLRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK
        SLRGNQREKDRERAQARN GKGK+KDDGLT EQRRERDAKALQEKAAKKAAQA+ G NSSGGK+S KK
Subjt:  SLRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK

KAG6593780.1 hypothetical protein SDJN03_13256, partial [Cucurbita argyrosperma subsp. sororia]

7.8e-23

100

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Query:  SLRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK
        SLRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK
Subjt:  SLRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK

KAG7026110.1 hypothetical protein SDJN02_12609, partial [Cucurbita argyrosperma subsp. argyrosperma]

7.8e-23

100

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Query:  SLRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK
        SLRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK
Subjt:  SLRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK

TYK21602.1 small EDRK-rich factor 2 [Cucumis melo var. makuwa]

5.8e-18

88.24

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Query:  SLRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK
        SLRGNQREKDRERAQARN GKGK+KDDGLT EQRRERDAKALQEKAAKKAAQA+ G NSSGGK+S KK
Subjt:  SLRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK

XP_023000038.1 small EDRK-rich factor 2-like [Cucurbita maxima]

1.9e-21

98.48

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Query:  RGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK
        RGNQREKDRERAQARN+GKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK
Subjt:  RGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C551 small EDRK-rich factor 2

3.1e-17

87.88

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Query:  RGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK
        RGNQREKDRERAQARN GKGK+KDDGLT EQRRERDAKALQEKAAKKAAQA+ G NSSGGK+S KK
Subjt:  RGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK

A0A5A7SS85 Small EDRK-rich factor 2

2.8e-18

88.24

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Query:  SLRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK
        SLRGNQREKDRERAQARN GKGK+KDDGLT EQRRERDAKALQEKAAKKAAQA+ G NSSGGK+S KK
Subjt:  SLRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK

A0A5D3DDD9 Small EDRK-rich factor 2

2.8e-18

88.24

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Query:  SLRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK
        SLRGNQREKDRERAQARN GKGK+KDDGLT EQRRERDAKALQEKAAKKAAQA+ G NSSGGK+S KK
Subjt:  SLRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK

A0A6J1CB00 small EDRK-rich factor 2-like

6.9e-17

87.88

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Query:  RGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK
        RGNQREKDRERAQARN  KGK KDDGLT EQRRERDAKALQEKAAKKAAQA+ G +SSGGKSSNKK
Subjt:  RGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK

A0A6J1KLF6 small EDRK-rich factor 2-like

9.3e-22

98.48

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Query:  RGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK
        RGNQREKDRERAQARN+GKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK
Subjt:  RGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G24100.1 Uncharacterised protein family SERF

1.9e-14

73.13

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Query:  RGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNS--SGGKSSNK
        RG+QRE+DRERA AR  GKGK+KDDGLT EQRRERDAKALQEK AKKAAQA+   +S   GGK +NK
Subjt:  RGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNS--SGGKSSNK

AT4G13615.1 Uncharacterised protein family SERF

1.2e-13

73.85

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Query:  RGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNK
        RG+QRE+DRERA AR  GKGK+ DDGLT EQRRERD KALQEKAAKKAAQA+G   SSGG +  K
Subjt:  RGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNK

Sequences

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CDS sequence

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mRNA sequence

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TCTCTACGCGGAAATCAGAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGTAACGCTGGCAAGGGCAAATCCAAGGATGATGGTTTGACCCACGAGCAGCGCCGTGAAAG
GGATGCGAAGGCTCTACAGGAGAAGGCGGCGAAGAAGGCGGCTCAGGCATCAGGGGGAGATAATTCGTCCGGAGGTAAAAGTAGCAATAAAAAGTAAATCGCCGTGAACT
ATGTCGATTTTTAACTTTGTTCTTGTTGGAACGCTGAGATCTCGTGGATTTCATAAGACTGTTTGATATGGGAGAAACAACCTCTGTATGTCTAAATGATGTGAATGGAT
ATGTATTATGCTGTCAACGTTAATTGGAGAAGCTCTCTTGATATGTTGTGTTGAGCTGATTATGTTGTTAATGCTTGATTTCCTGGAGATTGGATCTAGATGAAAAGTTT
CTCAATTATGATCTGATCTAACACAGATCTTCATGAACAAAAGAAATGAAATCGTATGGTTCTATCATTTGACTTCTTTAGTTACAATTTTCATTAGAATGATAAATCCT
TTTGT

Protein sequence

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SLRGNQREKDRERAQARNAGKGKSKDDGLTHEQRRERDAKALQEKAAKKAAQASGGDNSSGGKSSNKK

Carg11025 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome