CuGenDBv2

Gene ID	Carg11057
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RNA polymerase sigma factor
Genome location	Carg_Chr08:5807641..5811775
RNA-Seq Expression	Carg11057
Synteny	Carg11057
Gene Ontology terms	GO:0071482 - cellular response to light stimulus (biological process) GO:2000142 - regulation of DNA-templated transcription, initiation (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0016987 - sigma factor activity (molecular function)
InterPro domains	IPR000943 - RNA polymerase sigma-70 IPR007624 - RNA polymerase sigma-70 region 3 IPR007627 - RNA polymerase sigma-70 region 2 IPR007630 - RNA polymerase sigma-70 region 4 IPR013324 - RNA polymerase sigma factor, region 3/4-like IPR013325 - RNA polymerase sigma factor, region 2 IPR014284 - RNA polymerase sigma-70 like domain IPR016262 - RNA polymerase sigma factor, SigB/C/D/F, plastid IPR036388 - Winged helix-like DNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6593746.1 RNA polymerase sigma factor sigB, partial [Cucurbita argyrosperma subsp. sororia]

0.0e+00

99.49

Show/hide

Query:  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL
        MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL
Subjt:  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL

Query:  RSYL--VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
        RSYL  VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
Subjt:  RSYL--VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA

Query:  LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
        LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
Subjt:  LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL

Query:  SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG
        SEGIQDLLKLERLKEELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG
Subjt:  SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG

Query:  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS
        FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS
Subjt:  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS

Query:  DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
        DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
Subjt:  DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP

XP_022964550.1 RNA polymerase sigma factor sigB [Cucurbita moschata]

0.0e+00

98.3

Show/hide

Query:  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL
        MSCLLPQFKCHPETFSIQFKTPA TI  TPTPTSSHHHTFLPTANSTYFK RDPHSLRTQCILSAASPPT TGTATTFNVDRLKLPPFDTNTDSVSAERL
Subjt:  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL

Query:  RSYL--VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
        RSYL  VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNS+RSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
Subjt:  RSYL--VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA

Query:  LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
        LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
Subjt:  LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL

Query:  SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG
        SEGIQDLLKLERLKEELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG
Subjt:  SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG

Query:  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS
        FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS
Subjt:  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS

Query:  DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
        DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
Subjt:  DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP

XP_023000238.1 RNA polymerase sigma factor sigB [Cucurbita maxima]

2.2e-307

97.79

Show/hide

Query:  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL
        MSCLLPQFKCHPETFSIQFKTPAITI  TPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAA   TSTGTATTFNVDRLKLPPFDTNTDSVSAERL
Subjt:  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL

Query:  RSYL--VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
        RSYL  VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSS+SNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
Subjt:  RSYL--VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA

Query:  LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
        LEPSTAESDDMEPTSEELELL+DEFSKSIAVRS RQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
Subjt:  LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL

Query:  SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG
        SEGIQDLLKLERLKEELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG
Subjt:  SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG

Query:  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS
        FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLP DEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS
Subjt:  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS

Query:  DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
        DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
Subjt:  DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP

XP_023515004.1 RNA polymerase sigma factor sigB [Cucurbita pepo subsp. pepo]

0.0e+00

99.15

Show/hide

Query:  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL
        MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPH LRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL
Subjt:  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL

Query:  RSYL--VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
        RSYL  VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
Subjt:  RSYL--VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA

Query:  LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
        LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
Subjt:  LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL

Query:  SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG
        SEGIQDLLKLERLKEELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG
Subjt:  SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG

Query:  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS
        FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS
Subjt:  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS

Query:  DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
        DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
Subjt:  DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP

XP_038875580.1 RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida]

2.0e-276

88.1

Show/hide

Query:  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL
        MSCLLPQFKCHPETFSIQFKT A          + HHHTFLPTANS+Y KVRDPHSLRTQCILSAASPPTSTGTATT NVDRL LPPFDTNTDSVS ERL
Subjt:  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL

Query:  RSYL--VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
        RSYL  VESSLASTLLTSEEATIAAAAAEAVALAKAAVK A DAALL NNSNS+R+  KS+SS R +ALHFKW QFMESERADIIGEPVGVNNRP+E DA
Subjt:  RSYL--VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA

Query:  LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
        L+PST +SDDMEPTSEELELL+DE S+SI VRS RQTERKARRTRA+EK ATSVVSLKSGSSSRKKRNS QEVDY+DPLRYLRATTS S+LLTA++ELEL
Subjt:  LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL

Query:  SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG
        SEGIQDLLKLERL+EELA+RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKG
Subjt:  SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG

Query:  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS
        FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY+VKEARKQLY+ NGR P+DEEIA AAGLSMKRLA VLMTPKAPRSLEQK GINQNLKPSEVIS
Subjt:  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS

Query:  DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM
        DPEA TAED+LIKQFMKQ+LEKVLDSLNPRERQ+IRWR+GMEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQYL+
Subjt:  DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K917 RNA polymerase sigma factor

2.8e-271

86.22

Show/hide

Query:  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL
        MSCLLPQFKCHPETFSIQFKT A           SHHH+FLPTA S+Y KVRDPHSLRTQCILSAASPPTSTGTATT +VDRLKLPPFDTNTDSVS ERL
Subjt:  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL

Query:  RSYL--VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
        RSYL  VESSLASTLLTSEEA+IAAAAAEAV LAKAAVK A DAALL NN NS+R+ TKSQSS + +ALHFKW QFMESERADIIGEPVGVN RP+EGDA
Subjt:  RSYL--VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA

Query:  LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
        LEPST ESDDMEPTSEELELL+DE S+SI V+S RQTERKARRTRA+EK  TSV+S KSGSSSRKKRNS QEVDY+DPLRYLRATT+ S+LLTA++ELEL
Subjt:  LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL

Query:  SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG
        SEGIQDLLKLERL+EEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKG
Subjt:  SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG

Query:  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS
        FKFSTYAHWWIKQAVRK LSDQSRTIRLPFHMVEATY+VKEARKQL   NGR P+D+EIA AAGLSMKRLA VLMTPKAPRSLEQK GINQNLKPSEVIS
Subjt:  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS

Query:  DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM
        DPEA T ED+LIKQFMKQ+LEKVLDSLNPRE+Q+IRWR+GMEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQY+M
Subjt:  DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM

A0A1S3CD00 RNA polymerase sigma factor

3.3e-272

86.39

Show/hide

Query:  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL
        MSCLLPQFKCHPETFSIQFKT A          +SHHH+F+PTA S+Y KVRDPHSLRTQCILSAASPPTSTGTATT NVDRLKLPPFDTNTDSVS ERL
Subjt:  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL

Query:  RSYL--VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
        RSYL  VESSLASTLLTSEEATIAAAAAEAV LAKAAVK A DAALL NN NS+R+ TKSQ S + +ALHFKW QFMESERADIIGEPVGVN RP+EGDA
Subjt:  RSYL--VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA

Query:  LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
        LEPST ESDD+EPTS+ELELL+DE S+SI V+S RQTERKARRTRA+EK  TSVV  KSGSSSRKKR+S QEVDY+DPLRYLRATTS S+LLTA++ELEL
Subjt:  LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL

Query:  SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG
        SEGIQDLLKLERL+EELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKG
Subjt:  SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG

Query:  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS
        FKFSTYAHWWIKQAVRK LSDQSRTIRLPFHMVEATY+VKEARKQL + NGR P+D+EIA AAGLSMKRLA VLMTPKAPRSLEQK GINQNLKPSEVIS
Subjt:  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS

Query:  DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM
        DPEA TAED+LIKQFMKQ+LEKVLDSLNPRE+Q+IRWR+GMEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Subjt:  DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM

A0A6J1DSR7 RNA polymerase sigma factor

1.1e-272

87.24

Show/hide

Query:  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL
        MSCLLPQFKCHPETFSIQFKT AIT+  T T   SHHH FLPTANS+  KVRDPHSLRTQCILSAASP TSTGTATTFNV+RLKLPP D NTDS+SAERL
Subjt:  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL

Query:  RSYL--VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
        RSYL  VESS ASTLLTSEEATIAAAAAEAV LAKAAVK A DAALLVNNSNS+++  KSQSSS+S+ALHFKWDQFMESERADIIG PVGVNNRP EGDA
Subjt:  RSYL--VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA

Query:  LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
        L+  TAESD  +PT+EELELL+DE S +IAVRS RQTER+A+RTRA+EK ATSVVS+KSGSSSRKKRNS QEVDY+DPLRYLRATTS S+LLTA++ELEL
Subjt:  LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL

Query:  SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG
        SEGIQDLLKLERL+EEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKG
Subjt:  SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG

Query:  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS
        FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY+VKEARKQLY+ NGR P+DEEIA AAGLSMKRLA VLMTPKAPRSLEQK GINQNLKPSEVIS
Subjt:  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS

Query:  DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM
        DPEA T+EDLLIKQFMKQ+LEKVLDSLNPRERQ+IRWR+GMEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Subjt:  DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM

A0A6J1HL45 RNA polymerase sigma factor sigB

0.0e+00

98.3

Show/hide

Query:  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL
        MSCLLPQFKCHPETFSIQFKTPA TI  TPTPTSSHHHTFLPTANSTYFK RDPHSLRTQCILSAASPPT TGTATTFNVDRLKLPPFDTNTDSVSAERL
Subjt:  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL

Query:  RSYL--VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
        RSYL  VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNS+RSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
Subjt:  RSYL--VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA

Query:  LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
        LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
Subjt:  LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL

Query:  SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG
        SEGIQDLLKLERLKEELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG
Subjt:  SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG

Query:  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS
        FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS
Subjt:  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS

Query:  DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
        DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
Subjt:  DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP

A0A6J1KM29 RNA polymerase sigma factor

1.1e-307

97.79

Show/hide

Query:  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL
        MSCLLPQFKCHPETFSIQFKTPAITI  TPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAA   TSTGTATTFNVDRLKLPPFDTNTDSVSAERL
Subjt:  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL

Query:  RSYL--VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
        RSYL  VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSS+SNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
Subjt:  RSYL--VESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDA

Query:  LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
        LEPSTAESDDMEPTSEELELL+DEFSKSIAVRS RQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
Subjt:  LEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL

Query:  SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG
        SEGIQDLLKLERLKEELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG
Subjt:  SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKG

Query:  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS
        FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLP DEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS
Subjt:  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVIS

Query:  DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
        DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
Subjt:  DPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP

SwissProt top hits

e value

%identity

Alignment

O22056 RNA polymerase sigma factor sigB

3.6e-183

Show/hide

Query:  SCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLR
        SCLLPQFKC P++FSI F+T         +  +  H+       S +F        + QC +S  SP   T   +  +V +L+LP FDT++DS+ ++R  
Subjt:  SCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLR

Query:  SY-----------LVESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVN
        +Y            +E+  + TLLTS+EA + AAAAEAVALA+AAVK A DA L   NSN+   +T S +  RS     KWDQF E ERA I+G  + V+
Subjt:  SY-----------LVESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVN

Query:  NRPVEGDALEPSTAESD---DME-PTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSA
        +  +  D +  S +  +   D+E    EE+ELLE++ S S+AVRS RQTERKARR +  EK A+ + S+K+GSS +KKR   QEVD+NDPLRYLR TTS+
Subjt:  NRPVEGDALEPSTAESD---DME-PTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSA

Query:  SKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGL
        SKLLT  +E ELS GIQDLLKLERL+ EL ER G +PTFAQWA+AAGV+Q++LR+R+++GT CKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGL
Subjt:  SKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGL

Query:  VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFG
        VRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATY+VKEARKQLY+  G+ P +EEIA A GLSMKRL  VL++PK PRSL+QK G
Subjt:  VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFG

Query:  INQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM
        +NQNLKPSEVI+DPEAVT+ED+LIK+FM+Q+L+KVLDSL  RE+Q+IRWR+GMEDGRMKTLQEIGEMMGVSRER+RQIE  AFRKLKNKKR  HLQQYL+
Subjt:  INQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM

P26683 RNA polymerase sigma factor SigA

1.0e-73

43.98

Show/hide

Query:  KSGSSSRKKRNSGQEVDY--NDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKM
        KSG +++ +R +  +  +   D +R         +LL A +E+EL+  I DLL+LER++E L+E+   +P  ++WA A  +     R RL+ G   KDKM
Subjt:  KSGSSSRKKRNSGQEVDY--NDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKM

Query:  IKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPN
        ++SN+RLV+SIAK Y   G++ QDL+QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E   ++K+  K L    GR P 
Subjt:  IKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPN

Query:  DEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEM
        +EEIA    +++++L  +  + + P SLE   G  ++ +  + I + +  T ED + K  ++++LEKVLDSL+PRER ++R RYG++DGRMKTL+EIG++
Subjt:  DEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEM

Query:  MGVSRERIRQIELCAFRKLKNKKRTKHLQQYL
          V+RERIRQIE  A RKL++  R   L++Y+
Subjt:  MGVSRERIRQIELCAFRKLKNKKRTKHLQQYL

P38023 RNA polymerase sigma factor SigA1

3.4e-69

40.16

Show/hide

Query:  SEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVD-------------YNDPLRYLRATTSASKLLTASDELELS
        ++  ELL D   K    ++ R + +KA  T A  + AT++       +   + + G++ D               D +R         +LL A +E+EL+
Subjt:  SEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVD-------------YNDPLRYLRATTSASKLLTASDELELS

Query:  EGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGF
          I DLL LER+++EL E+    P+ A+WAAA        R+RL  G   KDKM++SN+RLV+SIAK Y   G++ QDL+QEG  GL+R AEKFD  KG+
Subjt:  EGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGF

Query:  KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISD
        KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E   ++K+  K L    GR P +EEIA    +++++L  +  + + P SLE   G  ++ +  + I +
Subjt:  KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISD

Query:  PEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYL
         +  T ED + K  ++++LE VL +L+PRER ++R RYG++DGRMKTL+EIG++  V+RERIRQIE  A RKL++  R   L++Y+
Subjt:  PEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYL

P52322 RNA polymerase sigma factor SigA

2.0e-64

38.25

Show/hide

Query:  SSRKKRNSGQEVDY-NDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEE----------------------LAERYGNEPTFA----------
        +S ++R++ ++  Y  D +R         +LL A +E+EL+  I DLLKLER++E+                      + E+   EP  +          
Subjt:  SSRKKRNSGQEVDY-NDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEE----------------------LAERYGNEPTFA----------

Query:  -------QWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD
               +W A +       ++RL +G   K+KM++SN+RLV+SIAK Y   G++ QDL+QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++D
Subjt:  -------QWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD

Query:  QSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELE
        QSRTIRLP H+ E   ++K+  K L     R P +EEIA    +++++L  +  + + P SLE   G  ++ +  + I + +  T ED + K  ++++LE
Subjt:  QSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELE

Query:  KVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYL
         VLD+L+PRER ++R RYG++DGRMKTL+EIG++  V+RERIRQIE  A RKL++  R   L++Y+
Subjt:  KVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYL

Q9LD95 RNA polymerase sigma factor sigF, chloroplastic

1.3e-60

37.34

Show/hide

Query:  VEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTAS
        V+     PS    D +  TS  + L E    K   VRS RQ ER+A+  RA +             +S KK+   Q  D +D L+         +LLTA 
Subjt:  VEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTAS

Query:  DELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKF
        +E EL   IQ LLKLE++K +L  + G EPT  +WA A G++   L+  ++ G   ++K+I +N+RLV+ IAK YQ  G+N QDL+QEG  GL++  EKF
Subjt:  DELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKF

Query:  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKP
            G +F+TYA+WWI+Q++RKS+   SRTIRLP ++     KV EARK         P+ EE+A   G+S ++L  +L   + P S++Q    +Q+   
Subjt:  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKP

Query:  SEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQY
         E+  D    T    + KQ M+  +  +L+ L+P+ER+II+ R+G++ G+ ++L EIGE+ G+S+ER+RQ+E  A  +LK    +  L  Y
Subjt:  SEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQY

Arabidopsis top hits

e value

%identity

Alignment

AT1G08540.1 RNApolymerase sigma subunit 2

2.5e-184

Show/hide

Query:  SCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLR
        SCLLPQFKC P++FSI F+T         +  +  H+       S +F        + QC +S  SP   T   +  +V +L+LP FDT++DS+ ++R  
Subjt:  SCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLR

Query:  SY-----------LVESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVN
        +Y            +E+  + TLLTS+EA + AAAAEAVALA+AAVK A DA L   NSN+   +T S +  RS     KWDQF E ERA I+G  + V+
Subjt:  SY-----------LVESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVN

Query:  NRPVEGDALEPSTAESD---DME-PTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSA
        +  +  D +  S +  +   D+E    EE+ELLE++ S S+AVRS RQTERKARR +  EK A+ + S+K+GSS +KKR   QEVD+NDPLRYLR TTS+
Subjt:  NRPVEGDALEPSTAESD---DME-PTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSA

Query:  SKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGL
        SKLLT  +E ELS GIQDLLKLERL+ EL ER G +PTFAQWA+AAGV+Q++LR+R+++GT CKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGL
Subjt:  SKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGL

Query:  VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFG
        VRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATY+VKEARKQLY+  G+ P +EEIA A GLSMKRL  VL++PK PRSL+QK G
Subjt:  VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFG

Query:  INQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM
        +NQNLKPSEVI+DPEAVT+ED+LIK+FM+Q+L+KVLDSL  RE+Q+IRWR+GMEDGRMKTLQEIGEMMGVSRER+RQIE  AFRKLKNKKR  HLQQYL+
Subjt:  INQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM

AT1G64860.1 sigma factor A

1.9e-38

32.96

Show/hide

Query:  ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRT
        AR+ R   K  T++  +K+ S      +SG++V       Y++   S   +L+  + + LS+ I+  L+L+  K  L +R G EP+  Q A +  +++  
Subjt:  ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRT

Query:  LRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVK
        L+  L      ++K+  SN+RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD+SKGF+ STY +WWI+Q V ++L D SRT+RLP H+ E    ++
Subjt:  LRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVK

Query:  EARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTA---------EDLLIKQFMKQELEKVLD-SLNPR
         A+ +L    G  P+ + IA +  +S K++           SL++    + N  P E      A T          +DL     +K+E+ K++  +L  R
Subjt:  EARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTA---------EDLLIKQFMKQELEKVLD-SLNPR

Query:  ERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM
        E++IIR  YG+ D    T ++I + +G+SRER+RQ+ L A  KLK+  R + ++  ++
Subjt:  ERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM

AT2G36990.1 RNApolymerase sigma-subunit F

9.3e-62

37.34

Show/hide

Query:  VEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTAS
        V+     PS    D +  TS  + L E    K   VRS RQ ER+A+  RA +             +S KK+   Q  D +D L+         +LLTA 
Subjt:  VEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTAS

Query:  DELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKF
        +E EL   IQ LLKLE++K +L  + G EPT  +WA A G++   L+  ++ G   ++K+I +N+RLV+ IAK YQ  G+N QDL+QEG  GL++  EKF
Subjt:  DELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKF

Query:  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKP
            G +F+TYA+WWI+Q++RKS+   SRTIRLP ++     KV EARK         P+ EE+A   G+S ++L  +L   + P S++Q    +Q+   
Subjt:  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKP

Query:  SEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQY
         E+  D    T    + KQ M+  +  +L+ L+P+ER+II+ R+G++ G+ ++L EIGE+ G+S+ER+RQ+E  A  +LK    +  L  Y
Subjt:  SEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQY

AT3G53920.1 RNApolymerase sigma-subunit C

1.9e-51

32.37

Show/hide

Query:  SEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKK---RNSGQEVD---YNDPLRYLRATTSASKLLTASDELELSEGIQDLL
        S+  EL++   ++ + V S R+ ++KARR         S V+ ++G  S      R +   +D      P +Y +     S+     +E E+S G++ + 
Subjt:  SEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKK---RNSGQEVD---YNDPLRYLRATTSASKLLTASDELELSEGIQDLL

Query:  KLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH
         +ER++ +L E  G   + + WAAAAG+N++ L + L+YG  C+D+++KS   LV+ +A+NY+G G+  +DL+Q G  G+++GAE+FD ++G+KFSTY  
Subjt:  KLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH

Query:  WWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANG-RLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTA
        +WI++++   +S  +R + +P  ++     +++ARK L T++G +   DEEIA   G S+K++       K   S+++K G     K  E   D    + 
Subjt:  WWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANG-RLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTA

Query:  EDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYL
        E+ +++Q  ++++  +L+ L PRE+Q++  RYG++D R K+L+EIG+++ VS+E IR+IE  A  KL+++   + L+ YL
Subjt:  EDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYL

AT5G13730.1 sigma factor 4

7.9e-45

35.33

Show/hide

Query:  SASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCR
        S S  L+  +E++L   +++  KLE L   + E   NE      A+  G  +R+  + L      ++K+ +   RLV+SIA  YQG G+NLQDL+QEG  
Subjt:  SASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCR

Query:  GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQK
        GL+RGAE+FD  +G+K STY +WWIKQA+ ++++ +SR ++LP  M E T KV EA   L     R P+ EEIA    L++  +   +   ++P SL++ 
Subjt:  GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQK

Query:  FGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQY
           N  +   E++  P+    E+++ ++ MK E+E++L SL  RE +++   +G+      + +EIG+ + +SRER+RQI   A +KL+N      L+ Y
Subjt:  FGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQY

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCGTGTTTACTTCCCCAATTCAAGTGCCATCCCGAAACATTCTCAATCCAATTTAAGACCCCCGCCATCACAATTACGCCTACGCCTACGCCTACTTCTTCTCACCA
TCATACCTTTCTTCCCACTGCTAATTCTACTTACTTTAAAGTCAGAGATCCTCATAGTTTACGGACACAATGTATCTTGTCTGCGGCGTCACCACCGACATCGACTGGAA
CAGCTACAACATTCAATGTGGATCGACTTAAATTGCCTCCTTTTGATACGAACACCGACTCAGTCTCTGCAGAAAGACTACGATCATATTTAGTTGAATCGAGCCTAGCC
TCAACGCTTCTAACGAGTGAAGAGGCTACAATAGCAGCTGCTGCAGCTGAAGCAGTTGCTCTTGCTAAAGCAGCCGTCAAGGCTGCAAATGATGCAGCTCTTCTGGTTAA
TAATAGCAACTCTGCCAGATCAGTAACAAAATCTCAATCGTCTTCGAGATCCAATGCTCTACATTTCAAATGGGATCAGTTTATGGAATCCGAAAGGGCTGATATAATCG
GAGAGCCGGTAGGAGTTAATAATCGTCCTGTGGAAGGTGATGCTTTGGAACCCAGCACAGCAGAATCTGATGATATGGAGCCAACATCTGAAGAACTTGAACTCTTAGAG
GATGAATTCTCTAAGAGTATAGCCGTAAGATCGATTCGTCAAACAGAACGAAAAGCTAGAAGAACTAGAGCCTCAGAGAAGGCTGCTACTAGTGTAGTGTCACTGAAGTC
GGGTTCTAGCAGCCGGAAGAAGCGTAATTCTGGACAAGAAGTGGACTATAATGACCCATTGCGTTATTTGAGAGCAACTACAAGCGCTTCTAAACTTCTTACTGCAAGTG
ATGAGCTTGAACTGTCAGAAGGAATTCAGGACTTGCTGAAACTAGAAAGACTCAAGGAGGAGCTTGCAGAACGTTACGGAAACGAACCAACCTTCGCACAATGGGCCGCT
GCTGCTGGAGTAAACCAGAGGACGCTGAGAAAGCGTCTAAACTACGGTACTTGTTGTAAAGATAAAATGATAAAAAGCAACATCCGTCTTGTCATATCGATAGCGAAAAA
TTATCAGGGAGGTGGAATGAATCTCCAAGATCTAGTTCAGGAAGGATGTCGAGGCCTTGTACGAGGTGCGGAGAAGTTCGATGCTTCAAAAGGCTTCAAGTTTTCAACGT
ATGCTCATTGGTGGATTAAGCAGGCAGTCCGAAAGTCTCTTTCCGATCAGTCGAGGACTATTCGCTTGCCGTTTCACATGGTGGAAGCAACTTATAAGGTAAAGGAAGCT
AGAAAGCAATTATATACTGCAAATGGAAGACTTCCTAACGATGAAGAAATCGCCGTAGCAGCCGGTCTGTCGATGAAGAGGCTTGCTACAGTACTGATGACTCCGAAAGC
ACCTCGATCCCTGGAACAGAAGTTCGGGATCAATCAAAATCTCAAACCTTCGGAAGTCATTTCCGACCCGGAAGCAGTAACCGCAGAAGATCTGTTGATAAAACAGTTCA
TGAAGCAGGAGCTAGAAAAGGTACTCGACTCGCTTAATCCGAGAGAGAGACAAATAATTAGATGGAGGTATGGCATGGAAGATGGGAGGATGAAAACATTGCAAGAAATA
GGAGAAATGATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAGCTATGTGCGTTCAGAAAACTCAAAAACAAGAAGAGAACTAAGCATTTGCAGCAGTATCTGATGCC
ATGA

mRNA sequence

Show/hide mRNA sequence

TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCAATCGCCTCTTTCATTCCCTTCATCAATCAATGAAACCCTTTTCATATGCTTCACATTTCCCC
TTCTGGGTCGCCGCCCCAGTTCAATTTTGAATGATTCCTTCATTTATGTCCGCCATAGTTGCAGATTAGCGGAACCCAGTTGGAGAACGAAGAACAAGAACAAGAACAAC
AAGGCGATGTCGTGTTTACTTCCCCAATTCAAGTGCCATCCCGAAACATTCTCAATCCAATTTAAGACCCCCGCCATCACAATTACGCCTACGCCTACGCCTACTTCTTC
TCACCATCATACCTTTCTTCCCACTGCTAATTCTACTTACTTTAAAGTCAGAGATCCTCATAGTTTACGGACACAATGTATCTTGTCTGCGGCGTCACCACCGACATCGA
CTGGAACAGCTACAACATTCAATGTGGATCGACTTAAATTGCCTCCTTTTGATACGAACACCGACTCAGTCTCTGCAGAAAGACTACGATCATATTTAGTTGAATCGAGC
CTAGCCTCAACGCTTCTAACGAGTGAAGAGGCTACAATAGCAGCTGCTGCAGCTGAAGCAGTTGCTCTTGCTAAAGCAGCCGTCAAGGCTGCAAATGATGCAGCTCTTCT
GGTTAATAATAGCAACTCTGCCAGATCAGTAACAAAATCTCAATCGTCTTCGAGATCCAATGCTCTACATTTCAAATGGGATCAGTTTATGGAATCCGAAAGGGCTGATA
TAATCGGAGAGCCGGTAGGAGTTAATAATCGTCCTGTGGAAGGTGATGCTTTGGAACCCAGCACAGCAGAATCTGATGATATGGAGCCAACATCTGAAGAACTTGAACTC
TTAGAGGATGAATTCTCTAAGAGTATAGCCGTAAGATCGATTCGTCAAACAGAACGAAAAGCTAGAAGAACTAGAGCCTCAGAGAAGGCTGCTACTAGTGTAGTGTCACT
GAAGTCGGGTTCTAGCAGCCGGAAGAAGCGTAATTCTGGACAAGAAGTGGACTATAATGACCCATTGCGTTATTTGAGAGCAACTACAAGCGCTTCTAAACTTCTTACTG
CAAGTGATGAGCTTGAACTGTCAGAAGGAATTCAGGACTTGCTGAAACTAGAAAGACTCAAGGAGGAGCTTGCAGAACGTTACGGAAACGAACCAACCTTCGCACAATGG
GCCGCTGCTGCTGGAGTAAACCAGAGGACGCTGAGAAAGCGTCTAAACTACGGTACTTGTTGTAAAGATAAAATGATAAAAAGCAACATCCGTCTTGTCATATCGATAGC
GAAAAATTATCAGGGAGGTGGAATGAATCTCCAAGATCTAGTTCAGGAAGGATGTCGAGGCCTTGTACGAGGTGCGGAGAAGTTCGATGCTTCAAAAGGCTTCAAGTTTT
CAACGTATGCTCATTGGTGGATTAAGCAGGCAGTCCGAAAGTCTCTTTCCGATCAGTCGAGGACTATTCGCTTGCCGTTTCACATGGTGGAAGCAACTTATAAGGTAAAG
GAAGCTAGAAAGCAATTATATACTGCAAATGGAAGACTTCCTAACGATGAAGAAATCGCCGTAGCAGCCGGTCTGTCGATGAAGAGGCTTGCTACAGTACTGATGACTCC
GAAAGCACCTCGATCCCTGGAACAGAAGTTCGGGATCAATCAAAATCTCAAACCTTCGGAAGTCATTTCCGACCCGGAAGCAGTAACCGCAGAAGATCTGTTGATAAAAC
AGTTCATGAAGCAGGAGCTAGAAAAGGTACTCGACTCGCTTAATCCGAGAGAGAGACAAATAATTAGATGGAGGTATGGCATGGAAGATGGGAGGATGAAAACATTGCAA
GAAATAGGAGAAATGATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAGCTATGTGCGTTCAGAAAACTCAAAAACAAGAAGAGAACTAAGCATTTGCAGCAGTATCT
GATGCCATGATGATGAGTTCTTCATCAGATTCCTTCAAAGAGTATCTATTATGATCTGGTATGAGAGGCTTAAACAAGGCTTGTTCTTTCTTTTTTCTGTAACATTTTTA
TTGTTCTTTCCCACTTTGAGGATAGATTAGTATCATGTTGTTTACAGACATAGCTACTTTCTGTTCATACATATTTAATTTAAATCAAGAGATTTGTCTTGATCCATGAT
TGTGGCCTCTGGATTAATGTCTTTACGATATAGTGTAACGAAAAGATGAACTTTTTTCGGGTTATTGACGACAGTTGTGCTATCAATACCAGATTCTACAGTCGAGCCGA
CCGATAATTCTACAGAAGGTTAGAGGTGAATTGAGACTTTTGAGTGGTGAATCAGTTC

Protein sequence

Show/hide protein sequence

MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLVESSLA
STLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLE
DEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAA
AAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEA
RKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEI
GEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP

Carg11057 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome