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Carg11103 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11103
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUbiquitin-related modifier 1 homolog
Genome locationCarg_Chr08:5480410..5480954
RNA-Seq ExpressionCarg11103
SyntenyCarg11103
Gene Ontology termsGO:0002098 - tRNA wobble uridine modification (biological process)
GO:0032447 - protein urmylation (biological process)
GO:0034227 - tRNA thio-modification (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0031386 - protein tag (molecular function)
InterPro domainsIPR012675 - Beta-grasp domain superfamily
IPR015221 - Ubiquitin-related modifier 1
IPR016155 - Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040023.1 ubiquitin-related modifier 1-like protein 2 [Cucumis melo var. makuwa]8.2e-4891.26Show/hide
Query:  VDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL
        +DMT+ L FKCSGGLELLC+SVKIHNVSI+PENG GKL+MKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL
Subjt:  VDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL

Query:  HGG
        HGG
Subjt:  HGG

KAG6593693.1 Ubiquitin-related modifier 1-like 2, partial [Cucurbita argyrosperma subsp. sororia]1.7e-4594.85Show/hide
Query:  LMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        L  +  GGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  LMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

KAG7026033.1 Ubiquitin-related modifier 1-like 2, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-52100Show/hide
Query:  MVDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIST
        MVDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIST
Subjt:  MVDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIST

Query:  LHGG
        LHGG
Subjt:  LHGG

XP_022145475.1 ubiquitin-related modifier 1 homolog 2 isoform X1 [Momordica charantia]1.7e-4891.26Show/hide
Query:  VDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL
        +DMT++L FKCSGGLELLC+SVKIHNVSI+PENGAGKL+MKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTL
Subjt:  VDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL

Query:  HGG
        HGG
Subjt:  HGG

XP_038876424.1 ubiquitin-related modifier 1 homolog 2 isoform X2 [Benincasa hispida]5.2e-5094.23Show/hide
Query:  MVDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIST
        M+DMTVIL FKCSGGLELLCDSVKIHNVSI+PENG GKL+MKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIST
Subjt:  MVDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIST

Query:  LHGG
        LHGG
Subjt:  LHGG

TrEMBL top hitse value%identityAlignment
A0A0A0KCT7 Ubiquitin-related modifier 1 homolog1.4e-4892.23Show/hide
Query:  VDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL
        +DMT+IL FKCSGGLELLC+SVKIHNVSI+PENG GK +MKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL
Subjt:  VDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL

Query:  HGG
        HGG
Subjt:  HGG

A0A5D3DLM7 Ubiquitin-related modifier 1 homolog4.0e-4891.26Show/hide
Query:  VDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL
        +DMT+ L FKCSGGLELLC+SVKIHNVSI+PENG GKL+MKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL
Subjt:  VDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL

Query:  HGG
        HGG
Subjt:  HGG

A0A6J1CUK8 Ubiquitin-related modifier 1 homolog8.0e-4991.26Show/hide
Query:  VDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL
        +DMT++L FKCSGGLELLC+SVKIHNVSI+PENGAGKL+MKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTL
Subjt:  VDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL

Query:  HGG
        HGG
Subjt:  HGG

A0A6J1HIP6 Ubiquitin-related modifier 1 homolog4.1e-4592.78Show/hide
Query:  LMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        L  +  GGLELLCDSVKIHN+SINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKG+TVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  LMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

A0A6J1KGQ8 Ubiquitin-related modifier 1 homolog2.4e-4593.81Show/hide
Query:  LMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        L  +  GGLELLCDSVKIHNVSINPENG GKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  LMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

SwissProt top hitse value%identityAlignment
A0MDQ1 Ubiquitin-related modifier 1 homolog 16.1e-3876.77Show/hide
Query:  LMFKCSGGLELLCDSVKIHNVSINPENGAGK--LVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        L  +  GGLELLCDS KIH V+++  NGA      MK LLSWVR+NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Subjt:  LMFKCSGGLELLCDSVKIHNVSINPENGAGK--LVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

B3H7G2 Ubiquitin-related modifier 1 homolog 27.8e-4186.81Show/hide
Query:  GGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        GGLELLCDSVKIH V+IN  N +  L MKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLE+KDV+VFISTLHGG
Subjt:  GGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

B6SXH2 Ubiquitin-related modifier 1 homolog7.8e-3368.69Show/hide
Query:  LMFKCSGGLELLCD-SVKIHNVSI-NPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        L  +  GGLELL + S K+H V +  P++G GK+ MK LLSWV+ NLIKERPEMF+K D+VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Subjt:  LMFKCSGGLELLCD-SVKIHNVSI-NPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

Q0D6M1 Ubiquitin-related modifier 1 homolog2.2e-3571.43Show/hide
Query:  LMFKCSGGLELLCD-SVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        L  +  GGLELL + S K+H V + P +G GK+VMK LL+WV+SNLIKERPEMF+KGD+VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Subjt:  LMFKCSGGLELLCD-SVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

Q7GBC8 Ubiquitin-related modifier 1 homolog2.2e-3571.43Show/hide
Query:  LMFKCSGGLELLCD-SVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        L  +  GGLELL + S K+H V + P +G GK+VMK LL+WV+SNLIKERPEMF+KGD+VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Subjt:  LMFKCSGGLELLCD-SVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

Arabidopsis top hitse value%identityAlignment
AT2G45695.1 Ubiquitin related modifier 14.4e-3976.77Show/hide
Query:  LMFKCSGGLELLCDSVKIHNVSINPENGAGK--LVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        L  +  GGLELLCDS KIH V+++  NGA      MK LLSWVR+NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Subjt:  LMFKCSGGLELLCDSVKIHNVSINPENGAGK--LVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

AT3G61113.1 Ubiquitin related modifier 15.5e-4286.81Show/hide
Query:  GGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        GGLELLCDSVKIH V+IN  N +  L MKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLE+KDV+VFISTLHGG
Subjt:  GGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGACATGACAGTAATATTAATGTTTAAATGCAGTGGGGGATTGGAGTTGCTATGTGACTCTGTGAAGATCCATAATGTCAGCATCAATCCTGAAAATGGAGCGGG
AAAGTTAGTCATGAAAGATTTGCTCTCTTGGGTCCGTTCTAATCTGATCAAGGAGCGGCCAGAAATGTTTATGAAAGGCGACACCGTAAGACCTGGTGTTCTGGTGCTTG
TAAATGATTGTGATTGGGAGCTGAGCGGGCAGCTTGACACAACATTGGAAGAGAAAGACGTGGTTGTGTTCATATCCACCTTGCATGGAGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGACATGACAGTAATATTAATGTTTAAATGCAGTGGGGGATTGGAGTTGCTATGTGACTCTGTGAAGATCCATAATGTCAGCATCAATCCTGAAAATGGAGCGGG
AAAGTTAGTCATGAAAGATTTGCTCTCTTGGGTCCGTTCTAATCTGATCAAGGAGCGGCCAGAAATGTTTATGAAAGGCGACACCGTAAGACCTGGTGTTCTGGTGCTTG
TAAATGATTGTGATTGGGAGCTGAGCGGGCAGCTTGACACAACATTGGAAGAGAAAGACGTGGTTGTGTTCATATCCACCTTGCATGGAGGCTAA
Protein sequenceShow/hide protein sequence
MVDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG