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Carg11108 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11108
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSerine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X2
Genome locationCarg_Chr08:5462534..5462929
RNA-Seq ExpressionCarg11108
SyntenyCarg11108
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040209.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.5e-0654.72Show/hide
Query:  KVIHKRVNTLDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLF
        KVI  RVNT+D+  R+  +LI P CC+LC+ VEEDLDH+   C FA  V S F
Subjt:  KVIHKRVNTLDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLF

KAA0067918.1 hypothetical protein E6C27_scaffold138G00850 [Cucumis melo var. makuwa]1.1e-0545.45Show/hide
Query:  KVIHKRVNTLDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLFFK
        +V+  RVNT+D+  RK    + P CC+LC++ EEDLDH+ C C +A  V S F +
Subjt:  KVIHKRVNTLDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLFFK

KAG7026028.1 hypothetical protein SDJN02_12526, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-44100Show/hide
Query:  MEGKSSNKVIHKRVNTLDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLFFKGDMNNRTFKGIERDPSDFWSLVRFY
        MEGKSSNKVIHKRVNTLDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLFFKGDMNNRTFKGIERDPSDFWSLVRFY
Subjt:  MEGKSSNKVIHKRVNTLDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLFFKGDMNNRTFKGIERDPSDFWSLVRFY

TYK04295.1 serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X2 [Cucumis melo var. makuwa]1.1e-0545.45Show/hide
Query:  KVIHKRVNTLDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLFFK
        +V+  RVNT+D+  RK    + P CC+LC++ EEDLDH+ C C +A  V S F +
Subjt:  KVIHKRVNTLDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLFFK

TYK07871.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.5e-0654.72Show/hide
Query:  KVIHKRVNTLDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLF
        KVI  RVNT+D+  R+  +LI P CC+LC+ VEEDLDH+   C FA  V S F
Subjt:  KVIHKRVNTLDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLF

TrEMBL top hitse value%identityAlignment
A0A5A7SVU9 Hydrolase_4 domain-containing protein8.6e-0445.61Show/hide
Query:  LDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLFFKGDMNNRTFKGI
        +D   RK+ +L+ P  CILC + EEDLDHIL  C F  T+ + F     NNR F+G+
Subjt:  LDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLFFKGDMNNRTFKGI

A0A5A7TG20 Ty3-gypsy retrotransposon protein3.2e-0654.72Show/hide
Query:  KVIHKRVNTLDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLF
        KVI  RVNT+D+  R+  +LI P CC+LC+ VEEDLDH+   C FA  V S F
Subjt:  KVIHKRVNTLDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLF

A0A5A7VJE4 zf-RVT domain-containing protein5.4e-0645.45Show/hide
Query:  KVIHKRVNTLDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLFFK
        +V+  RVNT+D+  RK    + P CC+LC++ EEDLDH+ C C +A  V S F +
Subjt:  KVIHKRVNTLDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLFFK

A0A5D3BYR2 Serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X25.4e-0645.45Show/hide
Query:  KVIHKRVNTLDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLFFK
        +V+  RVNT+D+  RK    + P CC+LC++ EEDLDH+ C C +A  V S F +
Subjt:  KVIHKRVNTLDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLFFK

A0A5D3C7M9 Ty3-gypsy retrotransposon protein3.2e-0654.72Show/hide
Query:  KVIHKRVNTLDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLF
        KVI  RVNT+D+  R+  +LI P CC+LC+ VEEDLDH+   C FA  V S F
Subjt:  KVIHKRVNTLDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGTAAAAGTTCAAATAAAGTTATCCATAAAAGAGTTAATACTTTAGACAAGTTTTCGAGGAAGATGTTTACTCTGATTGAGCCGTGTTGTTGCATTCTTTGTCG
GAGGGTAGAGGAAGACCTTGATCACATTCTTTGCACTTGCAGCTTTGCTGGGACTGTTTGTAGTCTCTTTTTTAAGGGTGACATGAATAATAGGACCTTTAAAGGGATTG
AGAGGGACCCTAGTGATTTTTGGTCCTTGGTTAGGTTCTAT
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGTAAAAGTTCAAATAAAGTTATCCATAAAAGAGTTAATACTTTAGACAAGTTTTCGAGGAAGATGTTTACTCTGATTGAGCCGTGTTGTTGCATTCTTTGTCG
GAGGGTAGAGGAAGACCTTGATCACATTCTTTGCACTTGCAGCTTTGCTGGGACTGTTTGTAGTCTCTTTTTTAAGGGTGACATGAATAATAGGACCTTTAAAGGGATTG
AGAGGGACCCTAGTGATTTTTGGTCCTTGGTTAGGTTCTAT
Protein sequenceShow/hide protein sequence
MEGKSSNKVIHKRVNTLDKFSRKMFTLIEPCCCILCRRVEEDLDHILCTCSFAGTVCSLFFKGDMNNRTFKGIERDPSDFWSLVRFY