; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg11114 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11114
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCarg_Chr08:5441631..5442880
RNA-Seq ExpressionCarg11114
SyntenyCarg11114
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7026022.1 hypothetical protein SDJN02_12520, partial [Cucurbita argyrosperma subsp. argyrosperma]3.9e-116100Show/hide
Query:  MLGIMIAPVFPLVNAVSPLTQIATQADVDISPVSFTLTVSQYFPRFLTVLQLTPHFFASFLVTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLL
        MLGIMIAPVFPLVNAVSPLTQIATQADVDISPVSFTLTVSQYFPRFLTVLQLTPHFFASFLVTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLL
Subjt:  MLGIMIAPVFPLVNAVSPLTQIATQADVDISPVSFTLTVSQYFPRFLTVLQLTPHFFASFLVTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLL

Query:  LAHENTDTELLERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCITTSESQIKLSVGDKKTILTRERGEYVNINPQGVETRFEF
        LAHENTDTELLERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCITTSESQIKLSVGDKKTILTRERGEYVNINPQGVETRFEF
Subjt:  LAHENTDTELLERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCITTSESQIKLSVGDKKTILTRERGEYVNINPQGVETRFEF

Query:  SIHPTSFFNNLTDKSRRKELD
        SIHPTSFFNNLTDKSRRKELD
Subjt:  SIHPTSFFNNLTDKSRRKELD

XP_022145570.1 uncharacterized protein LOC111014988 [Momordica charantia]2.5e-3845.58Show/hide
Query:  MLGIMIAPVFPLVNAVSPLTQIATQADVDISPVSFTLTVSQYFPRFLTVLQLTPHFFASFLVTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLL
        M  I + P+ PL +A+  LT+IAT+ADV  SP  F + VSQ  P F+  LQ++P FF SF V  N  +RICLDS H+ L+      A++ +L+E    LL
Subjt:  MLGIMIAPVFPLVNAVSPLTQIATQADVDISPVSFTLTVSQYFPRFLTVLQLTPHFFASFLVTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLL

Query:  LAHENTDTELLERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCITTSESQIKLSVGDKKTILTRERGEYVNINPQ-GVETRFE
        L  EN+      R+ L+L P E  +D+G+ID+ NCVSI   +FR IV  +LS  +  R+C T ++SQ+K SV +++ ILT+E G+ + I P+ GVET+FE
Subjt:  LAHENTDTELLERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCITTSESQIKLSVGDKKTILTRERGEYVNINPQ-GVETRFE

Query:  FSIHPTSFFNNLTDK
        F++HPTSFF +L DK
Subjt:  FSIHPTSFFNNLTDK

XP_022964069.1 uncharacterized protein LOC111464206 [Cucurbita moschata]5.0e-7999.36Show/hide
Query:  VTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLLLAHENTDTELLERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCI
        VTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLLLAHENTDTELLERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCI
Subjt:  VTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLLLAHENTDTELLERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCI

Query:  TTSESQIKLSVGDKKTILTRERGEYVNINPQ-GVETRFEFSIHPTSFFNNLTDKSRR
        TTSESQIKLSVGDKKTILTRERGEYVNINPQ GVETRFEFSIHPTSFFNNLTDKSRR
Subjt:  TTSESQIKLSVGDKKTILTRERGEYVNINPQ-GVETRFEFSIHPTSFFNNLTDKSRR

XP_022999836.1 uncharacterized protein LOC111494189 [Cucurbita maxima]3.9e-7998.08Show/hide
Query:  VTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLLLAHENTDTELLERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCI
        VTQNLNARICLDSFHTTLISAHQLSAVSINL+EVSRCLLLAHENTDTELLERKML+LLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSY+DRVCI
Subjt:  VTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLLLAHENTDTELLERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCI

Query:  TTSESQIKLSVGDKKTILTRERGEYVNINPQGVETRFEFSIHPTSFFNNLTDKSRR
        TTSESQIKLSVGDKKTILTRERGEYVNINPQGVETRFEFSIHPTSFFNNLTDKSRR
Subjt:  TTSESQIKLSVGDKKTILTRERGEYVNINPQGVETRFEFSIHPTSFFNNLTDKSRR

XP_023514482.1 uncharacterized protein LOC111778741 [Cucurbita pepo subsp. pepo]1.9e-7898.09Show/hide
Query:  VTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLLLAHENTDTELLERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCI
        VTQNLNARICLDSFHTTLISAHQLSAVSINL+EVSRCLLLAHENTDTELLERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSY+DRVCI
Subjt:  VTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLLLAHENTDTELLERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCI

Query:  TTSESQIKLSVGDKKTILTRERGEYVNINP-QGVETRFEFSIHPTSFFNNLTDKSRR
        TTSESQIKLSVGDKKTILTRERGEYVNINP QGVETRFEFSIHPTSFFNNLTDKSRR
Subjt:  TTSESQIKLSVGDKKTILTRERGEYVNINP-QGVETRFEFSIHPTSFFNNLTDKSRR

TrEMBL top hitse value%identityAlignment
A0A1S3C8J1 uncharacterized protein LOC1034980102.6e-2030.29Show/hide
Query:  PLVNAVSPLTQIATQADVDISPVSFTLTVSQYFPRFLTVLQLTPHFFASFLVTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLLLAHENTDTEL
        PL++A S L Q+A  ADV  +P+   + VS   P+F+  LQL+   F +F V  N ++++ L  FH  ++     S+++I+L++ +  ++L  E    ++
Subjt:  PLVNAVSPLTQIATQADVDISPVSFTLTVSQYFPRFLTVLQLTPHFFASFLVTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLLLAHENTDTEL

Query:  LERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCITTSESQIKLSVGDKKTILTRERGEYVNINPQG-VETRFEFSIHPTSFFN
                L P   ++LG +++ N  ++  R+ RRI+ +EL + ++D V +T + SQ+K S+  K+ ILT+E G    +  +G VET+ +  + P  FF 
Subjt:  LERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCITTSESQIKLSVGDKKTILTRERGEYVNINPQG-VETRFEFSIHPTSFFN

Query:  NLTDKSRR
        N T ++ +
Subjt:  NLTDKSRR

A0A6J1CUU8 uncharacterized protein LOC1110149881.2e-3845.58Show/hide
Query:  MLGIMIAPVFPLVNAVSPLTQIATQADVDISPVSFTLTVSQYFPRFLTVLQLTPHFFASFLVTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLL
        M  I + P+ PL +A+  LT+IAT+ADV  SP  F + VSQ  P F+  LQ++P FF SF V  N  +RICLDS H+ L+      A++ +L+E    LL
Subjt:  MLGIMIAPVFPLVNAVSPLTQIATQADVDISPVSFTLTVSQYFPRFLTVLQLTPHFFASFLVTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLL

Query:  LAHENTDTELLERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCITTSESQIKLSVGDKKTILTRERGEYVNINPQ-GVETRFE
        L  EN+      R+ L+L P E  +D+G+ID+ NCVSI   +FR IV  +LS  +  R+C T ++SQ+K SV +++ ILT+E G+ + I P+ GVET+FE
Subjt:  LAHENTDTELLERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCITTSESQIKLSVGDKKTILTRERGEYVNINPQ-GVETRFE

Query:  FSIHPTSFFNNLTDK
        F++HPTSFF +L DK
Subjt:  FSIHPTSFFNNLTDK

A0A6J1HM20 uncharacterized protein LOC1114642062.4e-7999.36Show/hide
Query:  VTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLLLAHENTDTELLERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCI
        VTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLLLAHENTDTELLERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCI
Subjt:  VTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLLLAHENTDTELLERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCI

Query:  TTSESQIKLSVGDKKTILTRERGEYVNINPQ-GVETRFEFSIHPTSFFNNLTDKSRR
        TTSESQIKLSVGDKKTILTRERGEYVNINPQ GVETRFEFSIHPTSFFNNLTDKSRR
Subjt:  TTSESQIKLSVGDKKTILTRERGEYVNINPQ-GVETRFEFSIHPTSFFNNLTDKSRR

A0A6J1KE78 uncharacterized protein LOC1114941891.9e-7998.08Show/hide
Query:  VTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLLLAHENTDTELLERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCI
        VTQNLNARICLDSFHTTLISAHQLSAVSINL+EVSRCLLLAHENTDTELLERKML+LLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSY+DRVCI
Subjt:  VTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLLLAHENTDTELLERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCI

Query:  TTSESQIKLSVGDKKTILTRERGEYVNINPQGVETRFEFSIHPTSFFNNLTDKSRR
        TTSESQIKLSVGDKKTILTRERGEYVNINPQGVETRFEFSIHPTSFFNNLTDKSRR
Subjt:  TTSESQIKLSVGDKKTILTRERGEYVNINPQGVETRFEFSIHPTSFFNNLTDKSRR

A0A6J1KIW5 uncharacterized protein LOC1114948746.3e-1931.53Show/hide
Query:  PLVNAVSPLTQIATQADVDISPVSFTLTVSQYFPRFLTVLQLTPHFFASFLVTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLLLAHENTDTEL
        PLV+  S L QIA ++D+  +P+S  LT S+  PRF+  LQ+    F  + V  +  +RI L+S H  L+     SA++I+L+E +  ++L  E  + E 
Subjt:  PLVNAVSPLTQIATQADVDISPVSFTLTVSQYFPRFLTVLQLTPHFFASFLVTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLLLAHENTDTEL

Query:  LERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCITTSESQIKLSVGDKKTILTRERGEYVNINPQG-VETRFEFSIHPTSFFN
          R    LLPP+    + +I+++  +++  RD R+++ +EL + + D VC+T + S+++ S+  ++ I  +E+G    +   G   T F   ++P  FF 
Subjt:  LERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCITTSESQIKLSVGDKKTILTRERGEYVNINPQG-VETRFEFSIHPTSFFN

Query:  NLT
        NLT
Subjt:  NLT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGGAATAATGATAGCGCCCGTGTTTCCTCTAGTGAACGCCGTCTCCCCTCTGACACAAATAGCAACGCAAGCCGACGTGGACATATCGCCGGTGAGCTTCACCCT
AACAGTGTCCCAATACTTCCCTCGCTTCCTTACAGTGCTTCAACTGACCCCTCACTTCTTCGCATCCTTCTTAGTGACTCAGAATCTGAACGCCAGAATTTGCCTCGACT
CATTCCACACCACATTGATATCCGCCCATCAGCTCTCCGCCGTCTCCATCAACCTCGTCGAGGTTTCCCGTTGCCTCCTTCTCGCCCATGAGAATACCGATACTGAACTT
CTCGAGCGAAAGATGCTCGAATTGCTGCCTCCAGAACACAACGATGATCTTGGCGACATTGACTTCACCAACTGTGTTTCTATTCATTTAAGGGATTTTAGACGCATTGT
TCATCAAGAGCTCTCTGTGTCCTACCGAGATCGAGTTTGCATTACGACATCGGAGTCTCAAATCAAGCTATCCGTCGGCGACAAAAAGACCATTCTTACTCGAGAGAGAG
GAGAATATGTGAATATCAATCCTCAAGGAGTCGAGACTCGATTTGAATTCAGTATCCATCCCACTTCGTTTTTCAATAATCTGACTGATAAATCCAGAAGGAAAGAATTA
GATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCGGAATAATGATAGCGCCCGTGTTTCCTCTAGTGAACGCCGTCTCCCCTCTGACACAAATAGCAACGCAAGCCGACGTGGACATATCGCCGGTGAGCTTCACCCT
AACAGTGTCCCAATACTTCCCTCGCTTCCTTACAGTGCTTCAACTGACCCCTCACTTCTTCGCATCCTTCTTAGTGACTCAGAATCTGAACGCCAGAATTTGCCTCGACT
CATTCCACACCACATTGATATCCGCCCATCAGCTCTCCGCCGTCTCCATCAACCTCGTCGAGGTTTCCCGTTGCCTCCTTCTCGCCCATGAGAATACCGATACTGAACTT
CTCGAGCGAAAGATGCTCGAATTGCTGCCTCCAGAACACAACGATGATCTTGGCGACATTGACTTCACCAACTGTGTTTCTATTCATTTAAGGGATTTTAGACGCATTGT
TCATCAAGAGCTCTCTGTGTCCTACCGAGATCGAGTTTGCATTACGACATCGGAGTCTCAAATCAAGCTATCCGTCGGCGACAAAAAGACCATTCTTACTCGAGAGAGAG
GAGAATATGTGAATATCAATCCTCAAGGAGTCGAGACTCGATTTGAATTCAGTATCCATCCCACTTCGTTTTTCAATAATCTGACTGATAAATCCAGAAGGAAAGAATTA
GATTAA
Protein sequenceShow/hide protein sequence
MLGIMIAPVFPLVNAVSPLTQIATQADVDISPVSFTLTVSQYFPRFLTVLQLTPHFFASFLVTQNLNARICLDSFHTTLISAHQLSAVSINLVEVSRCLLLAHENTDTEL
LERKMLELLPPEHNDDLGDIDFTNCVSIHLRDFRRIVHQELSVSYRDRVCITTSESQIKLSVGDKKTILTRERGEYVNINPQGVETRFEFSIHPTSFFNNLTDKSRRKEL
D