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Carg11166 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11166
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionflowering time control protein FCA
Genome locationCarg_Chr14:5041922..5042891
RNA-Seq ExpressionCarg11166
SyntenyCarg11166
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR036020 - WW domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018027.1 hypothetical protein SDJN02_19893, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-48100Show/hide
Query:  MPPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITYGLSSTEVLPQPNILSKKLEVQSSSAELDCMRLQSKPSPVVIPACV
        MPPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITYGLSSTEVLPQPNILSKKLEVQSSSAELDCMRLQSKPSPVVIPACV
Subjt:  MPPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITYGLSSTEVLPQPNILSKKLEVQSSSAELDCMRLQSKPSPVVIPACV

XP_011651537.1 flowering time control protein FCA isoform X2 [Cucumis sativus]5.9e-3260.77Show/hide
Query:  PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITY----------------------------------GLSSTEVLPQPNILS
        PPSARGVQT SGTP SP  RPS  VEV LECDWSEH+CPDGFKYYYNC+TY                                  G+SS EVLPQPN+LS
Subjt:  PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITY----------------------------------GLSSTEVLPQPNILS

Query:  KKLEVQSSSAELDCMRLQSKPSPVVIPACV
        +KLE Q SSAELDCMRLQSK SPVV PACV
Subjt:  KKLEVQSSSAELDCMRLQSKPSPVVIPACV

XP_022157018.1 CUGBP Elav-like family member 4 [Momordica charantia]2.6e-2755.73Show/hide
Query:  PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCIT---------------------------------YGLSSTEVLPQPNILSK
        PP+A G+QT SG P SP  RP  RVEV LECDWSEH+CPDGFKYYYNC+T                                   +SS EVLP PN+ S+
Subjt:  PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCIT---------------------------------YGLSSTEVLPQPNILSK

Query:  KLEVQSSSA--ELDCMRLQSKPSPVVIPACV
        KLEVQSSSA  ELDCMRLQSK SPVV PACV
Subjt:  KLEVQSSSA--ELDCMRLQSKPSPVVIPACV

XP_031738780.1 flowering time control protein FCA isoform X1 [Cucumis sativus]1.9e-3059.85Show/hide
Query:  PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITY----------------------------------GLSSTEVLPQPNILS
        PPSARGVQT SGTP SP  RPS  VEV LECDWSEH+CPDGFKYYYNC+TY                                  G+SS EVLPQPN+LS
Subjt:  PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITY----------------------------------GLSSTEVLPQPNILS

Query:  KKLEVQSSSA--ELDCMRLQSKPSPVVIPACV
        +KLE Q SSA  ELDCMRLQSK SPVV PACV
Subjt:  KKLEVQSSSA--ELDCMRLQSKPSPVVIPACV

XP_038905034.1 flowering time control protein FCA-like [Benincasa hispida]4.7e-2954.93Show/hide
Query:  PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITY----------------------------------GLSSTEVLPQPNILS
        PP+ARGVQT SGTP SP  RP  +VEV LECDWSEH+CPDGFKYYYNC+TY                                  GLSS EV PQPN+ S
Subjt:  PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITY----------------------------------GLSSTEVLPQPNILS

Query:  KKLEVQSSSA------------ELDCMRLQSKPSPVVIPACV
        +KLEVQ SSA            ELDCMRLQSKPSPVV PACV
Subjt:  KKLEVQSSSA------------ELDCMRLQSKPSPVVIPACV

TrEMBL top hitse value%identityAlignment
A0A0A0LBT6 Uncharacterized protein9.2e-3159.85Show/hide
Query:  PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITY----------------------------------GLSSTEVLPQPNILS
        PPSARGVQT SGTP SP  RPS  VEV LECDWSEH+CPDGFKYYYNC+TY                                  G+SS EVLPQPN+LS
Subjt:  PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITY----------------------------------GLSSTEVLPQPNILS

Query:  KKLEVQSSSA--ELDCMRLQSKPSPVVIPACV
        +KLE Q SSA  ELDCMRLQSK SPVV PACV
Subjt:  KKLEVQSSSA--ELDCMRLQSKPSPVVIPACV

A0A1S3BIF0 flowering time control protein FCA3.6e-2755.3Show/hide
Query:  PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITY----------------------------------GLSSTEVLPQPNILS
        PP+ RGVQT S T  SP  RPS RVEV LECDWSEH+CPDGFKYYYNC+TY                                  G+SS EV PQPN+ S
Subjt:  PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITY----------------------------------GLSSTEVLPQPNILS

Query:  KKLEVQSSSA--ELDCMRLQSKPSPVVIPACV
        +KL+ Q SSA  ELDCMRLQSK SPVV PACV
Subjt:  KKLEVQSSSA--ELDCMRLQSKPSPVVIPACV

A0A5A7T550 Flowering time control protein FCA3.6e-2755.3Show/hide
Query:  PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITY----------------------------------GLSSTEVLPQPNILS
        PP+ RGVQT S T  SP  RPS RVEV LECDWSEH+CPDGFKYYYNC+TY                                  G+SS EV PQPN+ S
Subjt:  PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITY----------------------------------GLSSTEVLPQPNILS

Query:  KKLEVQSSSA--ELDCMRLQSKPSPVVIPACV
        +KL+ Q SSA  ELDCMRLQSK SPVV PACV
Subjt:  KKLEVQSSSA--ELDCMRLQSKPSPVVIPACV

A0A6J1DSB0 CUGBP Elav-like family member 41.2e-2755.73Show/hide
Query:  PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCIT---------------------------------YGLSSTEVLPQPNILSK
        PP+A G+QT SG P SP  RP  RVEV LECDWSEH+CPDGFKYYYNC+T                                   +SS EVLP PN+ S+
Subjt:  PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCIT---------------------------------YGLSSTEVLPQPNILSK

Query:  KLEVQSSSA--ELDCMRLQSKPSPVVIPACV
        KLEVQSSSA  ELDCMRLQSK SPVV PACV
Subjt:  KLEVQSSSA--ELDCMRLQSKPSPVVIPACV

A0A6J1GA62 flowering time control protein FCA4.4e-2552.03Show/hide
Query:  PSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCIT----------------------------YGLSSTEVLPQPNILSKKLEVQS
        P AR VQT +GTP SP   PS +VE PLECDWSEH+CPDGFKYYYNC+T                             GLSS E LPQPN+    ++  +
Subjt:  PSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCIT----------------------------YGLSSTEVLPQPNILSKKLEVQS

Query:  SSAELDCMRLQSKPSPVVIPACV
        +  ELDCMRLQSK SPVV PACV
Subjt:  SSAELDCMRLQSKPSPVVIPACV

SwissProt top hitse value%identityAlignment
B8BCZ8 Flowering time control protein FCA2.2e-0538.46Show/hide
Query:  VPLECDWSEHSCPDGFKYYYNCIT----------YGLSSTEVLPQPNILSKKLEVQSSSAELDCMRLQSKPSPVVIPA
        VPL C+W+EH+ P+GFKYYYN IT          Y L   +   Q     K L +Q    +L   +LQS P     PA
Subjt:  VPLECDWSEHSCPDGFKYYYNCIT----------YGLSSTEVLPQPNILSKKLEVQSSSAELDCMRLQSKPSPVVIPA

Q6K271 Flowering time control protein FCA2.2e-0538.46Show/hide
Query:  VPLECDWSEHSCPDGFKYYYNCIT----------YGLSSTEVLPQPNILSKKLEVQSSSAELDCMRLQSKPSPVVIPA
        VPL C+W+EH+ P+GFKYYYN IT          Y L   +   Q     K L +Q    +L   +LQS P     PA
Subjt:  VPLECDWSEHSCPDGFKYYYNCIT----------YGLSSTEVLPQPNILSKKLEVQSSSAELDCMRLQSKPSPVVIPA

Arabidopsis top hitse value%identityAlignment
AT2G47310.1 flowering time control protein-related / FCA gamma-related4.5e-0670.83Show/hide
Query:  VPLECDWSEHSCPDGFKYYYNCIT
        V  ECDWSEH+CP+G KYY++CIT
Subjt:  VPLECDWSEHSCPDGFKYYYNCIT

AT4G16280.1 RNA binding;abscisic acid binding2.5e-0438.78Show/hide
Query:  LECDWSEHSCPDGFKYYYNCITYGLSSTEVLPQPNILSKKLEVQSSSAE
        ++C W+EH+ PDGFKYYYN +T G S  E   +  +  ++ + Q    E
Subjt:  LECDWSEHSCPDGFKYYYNCITYGLSSTEVLPQPNILSKKLEVQSSSAE

AT4G16280.2 RNA binding;abscisic acid binding2.5e-0438.78Show/hide
Query:  LECDWSEHSCPDGFKYYYNCITYGLSSTEVLPQPNILSKKLEVQSSSAE
        ++C W+EH+ PDGFKYYYN +T G S  E   +  +  ++ + Q    E
Subjt:  LECDWSEHSCPDGFKYYYNCITYGLSSTEVLPQPNILSKKLEVQSSSAE

AT4G16280.4 RNA binding;abscisic acid binding2.5e-0438.78Show/hide
Query:  LECDWSEHSCPDGFKYYYNCITYGLSSTEVLPQPNILSKKLEVQSSSAE
        ++C W+EH+ PDGFKYYYN +T G S  E   +  +  ++ + Q    E
Subjt:  LECDWSEHSCPDGFKYYYNCITYGLSSTEVLPQPNILSKKLEVQSSSAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCCTAGTGCACGTGGCGTTCAAACCTCTAGTGGTACTCCCAAATCACCTCGGAGGCGTCCAAGCTATCGGGTAGAAGTTCCTTTGGAGTGTGATTGGAGTGAACA
CAGCTGCCCAGACGGTTTCAAATACTATTATAACTGTATCACCTATGGCCTCTCATCAACCGAAGTACTGCCTCAGCCAAATATCTTGAGTAAAAAACTTGAAGTCCAAT
CTTCCTCAGCTGAGTTGGATTGTATGCGACTGCAATCTAAACCAAGTCCTGTTGTTATTCCAGCCTGTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCCTAGTGCACGTGGCGTTCAAACCTCTAGTGGTACTCCCAAATCACCTCGGAGGCGTCCAAGCTATCGGGTAGAAGTTCCTTTGGAGTGTGATTGGAGTGAACA
CAGCTGCCCAGACGGTTTCAAATACTATTATAACTGTATCACCTATGGCCTCTCATCAACCGAAGTACTGCCTCAGCCAAATATCTTGAGTAAAAAACTTGAAGTCCAAT
CTTCCTCAGCTGAGTTGGATTGTATGCGACTGCAATCTAAACCAAGTCCTGTTGTTATTCCAGCCTGTGTTTAACAATGTTGTCTAAGT
Protein sequenceShow/hide protein sequence
MPPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITYGLSSTEVLPQPNILSKKLEVQSSSAELDCMRLQSKPSPVVIPACV