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Carg11174 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11174
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor MYB108-like
Genome locationCarg_Chr14:5072418..5073371
RNA-Seq ExpressionCarg11174
SyntenyCarg11174
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581313.1 Transcription factor MYB2, partial [Cucurbita argyrosperma subsp. sororia]2.9e-3798.8Show/hide
Query:  RIAATSGQSLPACTETSTSTPTISESTLDNNSVNVDMFASCSDTSDWGDGFEASWWEGDGVESSFESLWTEENIRFLQQQLFD
        RIAATSGQSLPACTETSTSTPTISESTLDNNSVNVD+FASCSDTSDWGDGFEASWWEGDGVESSFESLWTEENIRFLQQQLFD
Subjt:  RIAATSGQSLPACTETSTSTPTISESTLDNNSVNVDMFASCSDTSDWGDGFEASWWEGDGVESSFESLWTEENIRFLQQQLFD

KAG6581313.1 Transcription factor MYB2, partial [Cucurbita argyrosperma subsp. sororia]8.1e-03100Show/hide
Query:  MADHVKKGPWTADEDSLLSHY
        MADHVKKGPWTADEDSLLSHY
Subjt:  MADHVKKGPWTADEDSLLSHY

KAG6581313.1 Transcription factor MYB2, partial [Cucurbita argyrosperma subsp. sororia]4.4e-3391.57Show/hide
Query:  RIAATSGQSLPACTETSTSTPTISESTLDNNSVNVDMFASCSDTSDWGDGFEASWWEGDGVESSFESLWTEENIRFLQQQLFD
        RIAATSGQSLPACTETSTSTP ISESTLD+NSVNVD+ ASCSDTS+WGDGFEA WWEGD VESSFESLWTEENIRFLQQQLFD
Subjt:  RIAATSGQSLPACTETSTSTPTISESTLDNNSVNVDMFASCSDTSDWGDGFEASWWEGDGVESSFESLWTEENIRFLQQQLFD

KAG7018035.1 hypothetical protein SDJN02_19901, partial [Cucurbita argyrosperma subsp. argyrosperma]9.4e-52100Show/hide
Query:  MADHVKKGPWTADEDSLLSHYRIAATSGQSLPACTETSTSTPTISESTLDNNSVNVDMFASCSDTSDWGDGFEASWWEGDGVESSFESLWTEENIRFLQQ
        MADHVKKGPWTADEDSLLSHYRIAATSGQSLPACTETSTSTPTISESTLDNNSVNVDMFASCSDTSDWGDGFEASWWEGDGVESSFESLWTEENIRFLQQ
Subjt:  MADHVKKGPWTADEDSLLSHYRIAATSGQSLPACTETSTSTPTISESTLDNNSVNVDMFASCSDTSDWGDGFEASWWEGDGVESSFESLWTEENIRFLQQ

Query:  QLFD
        QLFD
Subjt:  QLFD

XP_022935385.1 LOW QUALITY PROTEIN: transcription factor MYB108-like [Cucurbita moschata]4.1e-3190.36Show/hide
Query:  RIAATSGQSLPACTETSTSTPTISESTLDNNSVNVDMFASCSDTSDWGDGFEASWWEGDGVESSFESLWTEENIRFLQQQLFD
        RIAATSGQSLPACTETSTSTPTISESTLD+NSVNVD+ ASCSDTSDWGDGFEA WWEGD VESSFESLW EENI FL QQLFD
Subjt:  RIAATSGQSLPACTETSTSTPTISESTLDNNSVNVDMFASCSDTSDWGDGFEASWWEGDGVESSFESLWTEENIRFLQQQLFD

XP_022935385.1 LOW QUALITY PROTEIN: transcription factor MYB108-like [Cucurbita moschata]8.1e-03100Show/hide
Query:  MADHVKKGPWTADEDSLLSHY
        MADHVKKGPWTADEDSLLSHY
Subjt:  MADHVKKGPWTADEDSLLSHY

XP_022935385.1 LOW QUALITY PROTEIN: transcription factor MYB108-like [Cucurbita moschata]2.1e-2784.34Show/hide
Query:  RIAATSGQSLPACTETSTSTPTISESTLDNNSVNVDMFASCSDTSDWGDGFEASWWEGDGVESSFESLWTEENIRFLQQQLFD
        RIAATSGQSLPACTETSTSTPTISEST D+NSVN       +DTS WGDGFEA WWE DGVESSFESLWTEENIRFLQQQLFD
Subjt:  RIAATSGQSLPACTETSTSTPTISESTLDNNSVNVDMFASCSDTSDWGDGFEASWWEGDGVESSFESLWTEENIRFLQQQLFD

TrEMBL top hitse value%identityAlignment
A0A6J1DVA2 transcription factor MYB78-like8.4e-1453.54Show/hide
Query:  RIAATSGQSLPACTETSTSTPTI-SESTL-----DNNSVNVDMFASCSDTSD----------WGDGFEASWWEGDGVESSFESLWTEENIRFLQQQLFD
        RI A SG+S P   E+STS  T  +EST      +NN +  DM A+ SD+S+          W DGF A WW+GDGV+SS ESLWTEENI FLQQQLFD
Subjt:  RIAATSGQSLPACTETSTSTPTI-SESTL-----DNNSVNVDMFASCSDTSD----------WGDGFEASWWEGDGVESSFESLWTEENIRFLQQQLFD

A0A6J1FAH4 LOW QUALITY PROTEIN: transcription factor MYB108-like2.0e-3190.36Show/hide
Query:  RIAATSGQSLPACTETSTSTPTISESTLDNNSVNVDMFASCSDTSDWGDGFEASWWEGDGVESSFESLWTEENIRFLQQQLFD
        RIAATSGQSLPACTETSTSTPTISESTLD+NSVNVD+ ASCSDTSDWGDGFEA WWEGD VESSFESLW EENI FL QQLFD
Subjt:  RIAATSGQSLPACTETSTSTPTISESTLDNNSVNVDMFASCSDTSDWGDGFEASWWEGDGVESSFESLWTEENIRFLQQQLFD

A0A6J1FAH4 LOW QUALITY PROTEIN: transcription factor MYB108-like3.9e-03100Show/hide
Query:  MADHVKKGPWTADEDSLLSHY
        MADHVKKGPWTADEDSLLSHY
Subjt:  MADHVKKGPWTADEDSLLSHY

A0A6J1FAH4 LOW QUALITY PROTEIN: transcription factor MYB108-like1.0e-2784.34Show/hide
Query:  RIAATSGQSLPACTETSTSTPTISESTLDNNSVNVDMFASCSDTSDWGDGFEASWWEGDGVESSFESLWTEENIRFLQQQLFD
        RIAATSGQSLPACTETSTSTPTISEST D+NSVN       +DTS WGDGFEA WWE DGVESSFESLWTEENIRFLQQQLFD
Subjt:  RIAATSGQSLPACTETSTSTPTISESTLDNNSVNVDMFASCSDTSDWGDGFEASWWEGDGVESSFESLWTEENIRFLQQQLFD

A0A6J1GCD0 transcription factor MYB78-like3.1e-0850.52Show/hide
Query:  RIAATSG--QSL-PACTETSTSTPTISESTLDN---NSVNVDMFASCSDTSD--------WGDGFEASWWEGDGVESSFESLWTEENIRFLQQQLFD
        RI ATS    SL P C + STST  + E+T  N   N+   ++ AS SD SD        W +GF + W EGDGV+ S ESLWTEENI FL+QQLFD
Subjt:  RIAATSG--QSL-PACTETSTSTPTISESTLDN---NSVNVDMFASCSDTSD--------WGDGFEASWWEGDGVESSFESLWTEENIRFLQQQLFD

A0A6J1KAD5 transcription factor MYB78-like3.9e-1153.61Show/hide
Query:  RIAATSG--QSL-PACTETSTSTPTISESTLDN---NSVNVDMFASCSDTSD--------WGDGFEASWWEGDGVESSFESLWTEENIRFLQQQLFD
        RI ATS    SL P C + STST T+ E+T  N   N++  ++ AS SD SD        W +GF + WWEGDGV+ S ESLWTEENI FLQQQLFD
Subjt:  RIAATSG--QSL-PACTETSTSTPTISESTLDN---NSVNVDMFASCSDTSD--------WGDGFEASWWEGDGVESSFESLWTEENIRFLQQQLFD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGATCATGTGAAGAAAGGGCCGTGGACGGCGGACGAAGATTCCTTGCTTTCCCATTACCGGATTGCAGCCACCTCTGGTCAATCTTTGCCGGCGTGCACCGAGAC
CTCCACGTCAACTCCTACAATTTCAGAATCCACGTTGGATAACAATAGTGTCAATGTCGACATGTTTGCATCGTGTTCGGACACGTCAGATTGGGGAGACGGGTTTGAGG
CAAGTTGGTGGGAAGGAGACGGAGTTGAGTCATCATTTGAGAGCTTGTGGACTGAGGAAAACATTCGTTTCTTACAACAACAACTGTTTGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGATCATGTGAAGAAAGGGCCGTGGACGGCGGACGAAGATTCCTTGCTTTCCCATTACCGGATTGCAGCCACCTCTGGTCAATCTTTGCCGGCGTGCACCGAGAC
CTCCACGTCAACTCCTACAATTTCAGAATCCACGTTGGATAACAATAGTGTCAATGTCGACATGTTTGCATCGTGTTCGGACACGTCAGATTGGGGAGACGGGTTTGAGG
CAAGTTGGTGGGAAGGAGACGGAGTTGAGTCATCATTTGAGAGCTTGTGGACTGAGGAAAACATTCGTTTCTTACAACAACAACTGTTTGATTAG
Protein sequenceShow/hide protein sequence
MADHVKKGPWTADEDSLLSHYRIAATSGQSLPACTETSTSTPTISESTLDNNSVNVDMFASCSDTSDWGDGFEASWWEGDGVESSFESLWTEENIRFLQQQLFD