; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg11178 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11178
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionpolygalacturonase At1g48100-like
Genome locationCarg_Chr14:5099446..5101675
RNA-Seq ExpressionCarg11178
SyntenyCarg11178
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581318.1 Polygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]3.6e-11557.39Show/hide
Query:  MNSSFCSFALCITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQPPSPSPSPPLSPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEAFK
        MNSSFCSFALCITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQPPSPSPSPPLSPSPEP NPPD++DGGSSFNATGFFDVRHYGAIGDGTTDDTEAFK
Subjt:  MNSSFCSFALCITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQPPSPSPSPPLSPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEAFK

Query:  MAWDTA-----------------------------------------------------------------FNNMSLRGNGVIDGRGQKWWDLPCKPHRG
        MAWDTA                                                                  NNMSLRGNGVIDGRGQKWWDLPCKPHRG
Subjt:  MAWDTA-----------------------------------------------------------------FNNMSLRGNGVIDGRGQKWWDLPCKPHRG

Query:  GKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF-------------------------------------------------------------
        GKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF                                                             
Subjt:  GKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF-------------------------------------------------------------

Query:  -------------------------------------------SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILE
                                                   SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILE
Subjt:  -------------------------------------------SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILE

Query:  TQRDYC
        TQRDYC
Subjt:  TQRDYC

KAG7018039.1 Polygalacturonase, partial [Cucurbita argyrosperma subsp. argyrosperma]7.2e-140100Show/hide
Query:  MNSSFCSFALCITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQPPSPSPSPPLSPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEAFK
        MNSSFCSFALCITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQPPSPSPSPPLSPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEAFK
Subjt:  MNSSFCSFALCITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQPPSPSPSPPLSPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEAFK

Query:  MAWDTAFNNMSLRGNGVIDGRGQKWWDLPCKPHRGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHFSDSMPCVNLTLANIELFPSKGDIFLD
        MAWDTAFNNMSLRGNGVIDGRGQKWWDLPCKPHRGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHFSDSMPCVNLTLANIELFPSKGDIFLD
Subjt:  MAWDTAFNNMSLRGNGVIDGRGQKWWDLPCKPHRGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHFSDSMPCVNLTLANIELFPSKGDIFLD

Query:  PFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC
        PFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC
Subjt:  PFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC

XP_022935453.1 polygalacturonase At1g48100-like [Cucurbita moschata]2.0e-10548.64Show/hide
Query:  MNSSFCSFALCITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQP--PSPSPSPPLSPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEA
        MNS FCSFALCITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQP  PSPSPSPPLSPSPEP NPPDD+DGGSSFNATGFFDVRHYGAIGDGTTDDTEA
Subjt:  MNSSFCSFALCITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQP--PSPSPSPPLSPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEA

Query:  FKMAWDTA-----------------------------------------------------------------FNNMSLRGNGVIDGRGQKWWDLPCKPH
        FKMAWDTA                                                                  NNMSLRGNGVIDGRGQKWWDLPCKPH
Subjt:  FKMAWDTA-----------------------------------------------------------------FNNMSLRGNGVIDGRGQKWWDLPCKPH

Query:  RGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF-----------------------------------------------------------
        RGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF                                                           
Subjt:  RGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF-----------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC
                        SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC
Subjt:  ----------------SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC

XP_022983334.1 polygalacturonase At1g48100-like [Cucurbita maxima]5.4e-9545.49Show/hide
Query:  MNSSFCSFALCITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQPPSPSPSPPL------SPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTD
        MNS  CSFALCI LIIFFFPVHGRWHNHA NHKHSHHH HFTISQPPSPS S         SPSPEP NPPDD+DGGSSFN+TGFFDVRHYGAIGDGTTD
Subjt:  MNSSFCSFALCITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQPPSPSPSPPL------SPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTD

Query:  DTEAFKMAWDTA----------------------------------------------------------------------FNNMSLRGNGVIDGRGQK
        DTEAFKMAWDTA                                                                       NNMSLRGNGVIDGRGQK
Subjt:  DTEAFKMAWDTA----------------------------------------------------------------------FNNMSLRGNGVIDGRGQK

Query:  WWDLPCKPHRGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF--------------------------------------------------
        WWDLPCKPHRGGKG TKAGPCDSPIAIRFFMSSNL+VEGLRIKDSPQFHF                                                  
Subjt:  WWDLPCKPHRGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF--------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC
                                 SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC
Subjt:  -------------------------SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC

XP_023529142.1 polygalacturonase At1g48100-like [Cucurbita pepo subsp. pepo]4.3e-10046.96Show/hide
Query:  MNSSFCSFALCITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQPPSPSPSPPLSPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEAFK
        MNSSFCSFALCITLIIFFFPVHGRWHNHAKNHKHSHHH HFTISQPPSPSP    S SPEP NPPDD+DGGSSFNATGFFDVRHYGAIGDGTTDDTEAFK
Subjt:  MNSSFCSFALCITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQPPSPSPSPPLSPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEAFK

Query:  MAWDTA-----------------------------------------------------------------FNNMSLRGNGVIDGRGQKWWDLPCKPHRG
        +AWDTA                                                                  NNMSLRGNGVIDGRGQKWWDLPCKPHRG
Subjt:  MAWDTA-----------------------------------------------------------------FNNMSLRGNGVIDGRGQKWWDLPCKPHRG

Query:  GKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF-------------------------------------------------------------
        GKGRTKAGPCDSPIAIRFFMS+NLTVEGLRIKDSPQFHF                                                             
Subjt:  GKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF-------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC
                      SDSMPCVNLTLANIELFPS+GDIF+DPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC
Subjt:  --------------SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC

TrEMBL top hitse value%identityAlignment
A0A0A0LEQ6 Uncharacterized protein8.7e-6737.24Show/hide
Query:  ITLIIFF----FPVHGRWHNHAKNHK-HSHHHPHFTISQPPSPSPSPPLSPSPEPTNPPDDDDGG---SSFNATGFFDVRHYGAIGDGTTDDTEAFKMAW
        +T IIFF    FPVHGRWHNHAK HK HSHHH HFTISQPPSP      SPS EP   P +D+GG   SS N+T  FDVRH+GAIGDGT DDT AFKMAW
Subjt:  ITLIIFF----FPVHGRWHNHAKNHK-HSHHHPHFTISQPPSPSPSPPLSPSPEPTNPPDDDDGG---SSFNATGFFDVRHYGAIGDGTTDDTEAFKMAW

Query:  DTAFN---------------------------------------------------------------------NMSLRGNGVIDGRGQKWWDLPCKPHR
        DTA                                                                       NMSL+GNG+IDGRGQKWWDLPCKPH 
Subjt:  DTAFN---------------------------------------------------------------------NMSLRGNGVIDGRGQKWWDLPCKPHR

Query:  GGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF------------------------------------------------------------
          KG+T  GPCDSPIAIRFFMSS L VEG+RIKDSPQFHF                                                            
Subjt:  GGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC
                       SDSMPC+NLTLANIELFPS+GDI LDPFCWNAYG+LQTLTIPP+ CLLE SSRS LE+++DYC
Subjt:  ---------------SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC

A0A5A7T924 Polygalacturonase5.0e-6236.63Show/hide
Query:  SFALCITLIIFF----FPVHGRWHNHAKNHK-HSHHHPHFTISQPPSPSPSPPLSPSP------EPTNPPDDDDG-GSSFNATGFFDVRHYGAIGDGTTD
        SF  CIT IIFF    FPV+GRWHNHAK HK HSHHH HFTISQPPSP PSP  SPSP      EP +PP+DD G  SS N+T  FDVRH+GAIGDGT D
Subjt:  SFALCITLIIFF----FPVHGRWHNHAKNHK-HSHHHPHFTISQPPSPSPSPPLSPSP------EPTNPPDDDDG-GSSFNATGFFDVRHYGAIGDGTTD

Query:  DTEAFKMAWDTAFN--------------------------------------------------------------------NMSLRGNGVIDGRGQKWW
        DT AFKMAWDTA                                                                      NMSL+GNG+IDGRGQKWW
Subjt:  DTEAFKMAWDTAFN--------------------------------------------------------------------NMSLRGNGVIDGRGQKWW

Query:  DLPCKPHRGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF----------------------------------------------------
        DLPCKPH   K ++ +       AIRFFMSS L VEG+RIKDSPQFHF                                                    
Subjt:  DLPCKPHRGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF----------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------------------SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC
                               SDSMPC+NLTLANIELFPSKGDI LDPFCWNAYG+LQTLTIPP+ CLLE SSRS LE+++DYC
Subjt:  -----------------------SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC

A0A5D3DA93 Polygalacturonase7.6e-7138.48Show/hide
Query:  SFALCITLIIFF----FPVHGRWHNHAKNHK-HSHHHPHFTISQPPSPSPSPPLSPSP------EPTNPPDDDDG-GSSFNATGFFDVRHYGAIGDGTTD
        SF  CIT IIFF    FPV+GRWHNHAK HK HSHHH HFTISQPPSP PSP  SPSP      EP +PP+DD G  SS N+T  FDVRH+GAIGDGT D
Subjt:  SFALCITLIIFF----FPVHGRWHNHAKNHK-HSHHHPHFTISQPPSPSPSPPLSPSP------EPTNPPDDDDG-GSSFNATGFFDVRHYGAIGDGTTD

Query:  DTEAFKMAWDTAFN--------------------------------------------------------------------NMSLRGNGVIDGRGQKWW
        DT AFKMAWDTA                                                                      NMSL+GNG+IDGRGQKWW
Subjt:  DTEAFKMAWDTAFN--------------------------------------------------------------------NMSLRGNGVIDGRGQKWW

Query:  DLPCKPHRGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF----------------------------------------------------
        DLPCKPH   KG+T  GPCDSPIAIRFFMSS L VEG+RIKDSPQFHF                                                    
Subjt:  DLPCKPHRGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF----------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------------------SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC
                               SDSMPC+NLTLANIELFPSKGDI LDPFCWNAYG+LQTLTIPP+ CLLE SSRS LE+++DYC
Subjt:  -----------------------SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC

A0A6J1FAK7 polygalacturonase At1g48100-like9.5e-10648.64Show/hide
Query:  MNSSFCSFALCITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQP--PSPSPSPPLSPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEA
        MNS FCSFALCITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQP  PSPSPSPPLSPSPEP NPPDD+DGGSSFNATGFFDVRHYGAIGDGTTDDTEA
Subjt:  MNSSFCSFALCITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQP--PSPSPSPPLSPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEA

Query:  FKMAWDTA-----------------------------------------------------------------FNNMSLRGNGVIDGRGQKWWDLPCKPH
        FKMAWDTA                                                                  NNMSLRGNGVIDGRGQKWWDLPCKPH
Subjt:  FKMAWDTA-----------------------------------------------------------------FNNMSLRGNGVIDGRGQKWWDLPCKPH

Query:  RGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF-----------------------------------------------------------
        RGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF                                                           
Subjt:  RGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF-----------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC
                        SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC
Subjt:  ----------------SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC

A0A6J1J721 polygalacturonase At1g48100-like2.6e-9545.49Show/hide
Query:  MNSSFCSFALCITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQPPSPSPSPPL------SPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTD
        MNS  CSFALCI LIIFFFPVHGRWHNHA NHKHSHHH HFTISQPPSPS S         SPSPEP NPPDD+DGGSSFN+TGFFDVRHYGAIGDGTTD
Subjt:  MNSSFCSFALCITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQPPSPSPSPPL------SPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTD

Query:  DTEAFKMAWDTA----------------------------------------------------------------------FNNMSLRGNGVIDGRGQK
        DTEAFKMAWDTA                                                                       NNMSLRGNGVIDGRGQK
Subjt:  DTEAFKMAWDTA----------------------------------------------------------------------FNNMSLRGNGVIDGRGQK

Query:  WWDLPCKPHRGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF--------------------------------------------------
        WWDLPCKPHRGGKG TKAGPCDSPIAIRFFMSSNL+VEGLRIKDSPQFHF                                                  
Subjt:  WWDLPCKPHRGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF--------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC
                                 SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC
Subjt:  -------------------------SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC

SwissProt top hitse value%identityAlignment
O23147 Polygalacturonase ADPG11.2e-0725.58Show/hide
Query:  VRHYGAIGDGTTDDTEAFKMAWDTA------------------------------------------------------------FNNMSLRG--NGVID
        V ++GA GDG TDDT+AFK AW  A                                                             NN+S+ G   G+I+
Subjt:  VRHYGAIGDGTTDDTEAFKMAWDTA------------------------------------------------------------FNNMSLRG--NGVID

Query:  GRGQKWWDLPCKPHRGGKGRTKAGPC-DSPIAIRFFMSSNLTVEGLRIKDSPQFHFSDSMPCVNLTLANIEL
        G G+ WW   CK         K+ PC  +P A+  +   NL V+ LR+K++ Q   S    C  + ++N+E+
Subjt:  GRGQKWWDLPCKPHRGGKGRTKAGPC-DSPIAIRFFMSSNLTVEGLRIKDSPQFHFSDSMPCVNLTLANIEL

P43212 Polygalacturonase1.5e-1029.19Show/hide
Query:  SSFNATGFFDVRHYGAIGDGTTDDTEAFKMAWDTA-----------------FNNM------------------------------------------SL
        S  +A   F+V  YGA+GDG  D TEAF  AW  A                  NN+                                          +L
Subjt:  SSFNATGFFDVRHYGAIGDGTTDDTEAFKMAWDTA-----------------FNNM------------------------------------------SL

Query:  RGNGVIDGRGQKWWDLPCKPHRGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFH
         G GVIDG+G++WW   CK      GR      D P AI+F  S+ L ++GL++ +SP+FH
Subjt:  RGNGVIDGRGQKWWDLPCKPHRGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFH

Q7M1E7 Polygalacturonase2.1e-0928.57Show/hide
Query:  SSFNATGFFDVRHYGAIGDGTTDDTEAFKMAWDTA-----------------FNNM------------------------------------------SL
        S  +A   F+V  YGA+GDG  D TEAF   W+ A                  NN+                                          +L
Subjt:  SSFNATGFFDVRHYGAIGDGTTDDTEAFKMAWDTA-----------------FNNM------------------------------------------SL

Query:  RGNGVIDGRGQKWWDLPCKPHRGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFH
         G GVIDG+GQ+WW   CK      GRT     + P AI+   S ++TV+ L + +SP+FH
Subjt:  RGNGVIDGRGQKWWDLPCKPHRGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFH

Q8RY29 Polygalacturonase ADPG22.3e-0826.47Show/hide
Query:  VRHYGAIGDGTTDDTEAFKMAWDTA------------------------------------------------------------FNNMSLRG--NGVID
        V  +GA GDG TDDT+AF  AW  A                                                             NN+S+ G   GV+D
Subjt:  VRHYGAIGDGTTDDTEAFKMAWDTA------------------------------------------------------------FNNMSLRG--NGVID

Query:  GRGQKWWDLPCKPHRGGKGRTKAGPC-DSPIAIRFFMSSNLTVEGLRIKDSPQFHFSDSMPCVNLTLANI
        G G+ WW   CK       R KA PC  +P A+ F+ S +L V+ L+++++ Q   S    C N+ ++N+
Subjt:  GRGQKWWDLPCKPHRGGKGRTKAGPC-DSPIAIRFFMSSNLTVEGLRIKDSPQFHFSDSMPCVNLTLANI

Q949Z1 Polygalacturonase At1g481001.5e-2332.34Show/hide
Query:  ITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQPPSPSPSPPL-----------SPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEAFK
        + + I    + G + N A+   H H   H  ++ P  P P PPL            P P P   P D D G        FDV  +GA+GDG+ DDT AF+
Subjt:  ITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQPPSPSPSPPL-----------SPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEAFK

Query:  MAWDTA--------------------------------------------------------------FNNMSLRGNGVIDGRGQKWWDLPCKPHRGGKG
         AW  A                                                               +  +  G G ++G GQKWWDLPCKPHRG  G
Subjt:  MAWDTA--------------------------------------------------------------FNNMSLRGNGVIDGRGQKWWDLPCKPHRGGKG

Query:  RTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFH
         + +GPC SP  IRFFMS+N+ V+GLRI++SPQFH
Subjt:  RTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFH

Q949Z1 Polygalacturonase At1g481003.4e-1544.87Show/hide
Query:  AIRFFMSSNLTVEGLRIKDSPQFHF--SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEAS
        A++ F      ++G     SP  HF  SD++ C N+T++ +EL P +G++  DPFCWNAYG  +TLTIPP+ CLL+ S
Subjt:  AIRFFMSSNLTVEGLRIKDSPQFHF--SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEAS

Arabidopsis top hitse value%identityAlignment
AT1G02460.1 Pectin lyase-like superfamily protein8.1e-4127.67Show/hide
Query:  ITLIIFFFPV-HGRWHNHAKNHKHSHHH--------PHFTISQPPSPSPSPPLSPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEAFKMA
        +TLI+    +   R H+H + HKH++H+        P  +ISQPP+P P PP SP+P     P DD    +    G ++VR YGA+GDG TDDTEAFK A
Subjt:  ITLIIFFFPV-HGRWHNHAKNHKHSHHH--------PHFTISQPPSPSPSPPLSPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEAFKMA

Query:  WDTAFNN-----------------------------------------------------------------MSLRGNGVIDGRGQKWWDLPCKPHRG-G
        WD++ NN                                                                 M+L+G GVIDGRGQKWWDLPCKPHR   
Subjt:  WDTAFNN-----------------------------------------------------------------MSLRGNGVIDGRGQKWWDLPCKPHRG-G

Query:  KGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF--------------------------------------------------------------
        K     GPCDSPIA+RFFMSSNL VEGL+IK+SPQFHF                                                              
Subjt:  KGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHF--------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC
                      SD++PC NLTL++IEL P+KG+I LDPFCWNAYG  + L+IPP+ CL+    + +  +  D C
Subjt:  --------------SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC

AT1G48100.1 Pectin lyase-like superfamily protein1.1e-2432.34Show/hide
Query:  ITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQPPSPSPSPPL-----------SPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEAFK
        + + I    + G + N A+   H H   H  ++ P  P P PPL            P P P   P D D G        FDV  +GA+GDG+ DDT AF+
Subjt:  ITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQPPSPSPSPPL-----------SPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEAFK

Query:  MAWDTA--------------------------------------------------------------FNNMSLRGNGVIDGRGQKWWDLPCKPHRGGKG
         AW  A                                                               +  +  G G ++G GQKWWDLPCKPHRG  G
Subjt:  MAWDTA--------------------------------------------------------------FNNMSLRGNGVIDGRGQKWWDLPCKPHRGGKG

Query:  RTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFH
         + +GPC SP  IRFFMS+N+ V+GLRI++SPQFH
Subjt:  RTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFH

AT1G48100.1 Pectin lyase-like superfamily protein2.4e-1644.87Show/hide
Query:  AIRFFMSSNLTVEGLRIKDSPQFHF--SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEAS
        A++ F      ++G     SP  HF  SD++ C N+T++ +EL P +G++  DPFCWNAYG  +TLTIPP+ CLL+ S
Subjt:  AIRFFMSSNLTVEGLRIKDSPQFHF--SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEAS

AT1G56710.1 Pectin lyase-like superfamily protein1.5e-2637.16Show/hide
Query:  LSPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEAFKMAWDTA------------------------------------------------
        LSPSP P    +D+D      A   FDV  +GAIGD +TDDT AFKMAWD A                                                
Subjt:  LSPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEAFKMAWDTA------------------------------------------------

Query:  ----------------FNNMSLRGNGVIDGRGQKWWDLPCKPHRGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFH
                         N +S++G+GVI+GRGQKWW+LPCKPH+G  G T+ GPCDSP+AIR F SS + ++G+   +S QFH
Subjt:  ----------------FNNMSLRGNGVIDGRGQKWWDLPCKPHRGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFH

AT1G56710.1 Pectin lyase-like superfamily protein7.7e-1558.62Show/hide
Query:  SPQFHF--SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEA
        SP  HF  SDS+PC NLTL  ++LFPSKG    +PFCWNAYG ++ +T+PP+ CLL+A
Subjt:  SPQFHF--SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEA

AT4G01890.1 Pectin lyase-like superfamily protein1.3e-2738.81Show/hide
Query:  HFTISQPPSPSPSPPLSPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEAFKMAWDTA---------------------------------
        H   SQPPSPSP+P   PS  P+   D D           +DVR YGA+G+G  DDT +FK AWD+A                                 
Subjt:  HFTISQPPSPSPSPPLSPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEAFKMAWDTA---------------------------------

Query:  ---------------------------------FNNMSLRGNGVIDGRGQKWWDLPCKPHRGGKGRTK-AGPCDSPIAIRFFMSSNLTVEGLRIKDSPQF
                                          N M+L+G GVIDGRGQ WWDLPCKPH+    +TK AGPC+SP A+RFFMSSN+ V+GL IK+SPQ 
Subjt:  ---------------------------------FNNMSLRGNGVIDGRGQKWWDLPCKPHRGGKGRTK-AGPCDSPIAIRFFMSSNLTVEGLRIKDSPQF

Query:  H
        H
Subjt:  H

AT4G01890.1 Pectin lyase-like superfamily protein2.2e-1449.3Show/hide
Query:  SPQFHF--SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC
        SP  HF  S+++PC NLTL+NIEL PSK DI + PFCWNAYG     ++P + CL    S S+L      C
Subjt:  SPQFHF--SDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGCLLEASSRSILETQRDYC

AT5G14650.1 Pectin lyase-like superfamily protein2.5e-1340.74Show/hide
Query:  LTVEGLRIKDSPQFHFSDSMPCVNLTLANIELFPSKGDI-FLDPFCWNAYGDLQTLTIPPLGCL-LEASSRSILETQRDYC
        + ++G   K+  +F  SDS+PC  ++L+ IEL P+ G    LDPFCW A+G+L+T T+PP+ CL  E S  +   +  D C
Subjt:  LTVEGLRIKDSPQFHFSDSMPCVNLTLANIELFPSKGDI-FLDPFCWNAYGDLQTLTIPPLGCL-LEASSRSILETQRDYC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTCTTCTTTTTGTTCCTTTGCTTTGTGTATTACACTCATAATCTTCTTCTTTCCTGTTCATGGACGATGGCATAACCATGCAAAGAACCACAAACATTCTCACCA
TCATCCCCATTTCACCATTTCACAACCTCCTTCTCCTTCTCCTTCTCCTCCTCTTTCTCCTTCCCCCGAACCCACGAATCCTCCCGACGACGACGACGGAGGGTCATCTT
TCAACGCCACCGGCTTTTTCGACGTACGTCATTATGGCGCCATTGGAGATGGCACTACAGATGACACGGAGGCCTTCAAGATGGCATGGGACACAGCCTTTAATAACATG
TCGCTTCGAGGAAATGGCGTTATTGATGGGCGAGGTCAAAAATGGTGGGATCTTCCCTGCAAACCCCACAGAGGAGGAAAGGGAAGAACAAAGGCAGGCCCTTGTGATAG
TCCAATTGCCATAAGATTCTTCATGAGCTCAAACTTGACCGTTGAAGGGCTTAGAATCAAAGACAGCCCACAATTCCACTTCAGTGATTCTATGCCTTGTGTGAACCTAA
CACTTGCAAATATCGAGCTTTTTCCTTCAAAAGGTGACATCTTTTTGGACCCATTTTGTTGGAATGCGTATGGGGACTTGCAAACCCTAACAATCCCTCCACTTGGGTGC
TTGCTTGAAGCCTCCTCCAGGTCTATCTTGGAGACTCAAAGGGATTATTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACTCTTCTTTTTGTTCCTTTGCTTTGTGTATTACACTCATAATCTTCTTCTTTCCTGTTCATGGACGATGGCATAACCATGCAAAGAACCACAAACATTCTCACCA
TCATCCCCATTTCACCATTTCACAACCTCCTTCTCCTTCTCCTTCTCCTCCTCTTTCTCCTTCCCCCGAACCCACGAATCCTCCCGACGACGACGACGGAGGGTCATCTT
TCAACGCCACCGGCTTTTTCGACGTACGTCATTATGGCGCCATTGGAGATGGCACTACAGATGACACGGAGGCCTTCAAGATGGCATGGGACACAGCCTTTAATAACATG
TCGCTTCGAGGAAATGGCGTTATTGATGGGCGAGGTCAAAAATGGTGGGATCTTCCCTGCAAACCCCACAGAGGAGGAAAGGGAAGAACAAAGGCAGGCCCTTGTGATAG
TCCAATTGCCATAAGATTCTTCATGAGCTCAAACTTGACCGTTGAAGGGCTTAGAATCAAAGACAGCCCACAATTCCACTTCAGTGATTCTATGCCTTGTGTGAACCTAA
CACTTGCAAATATCGAGCTTTTTCCTTCAAAAGGTGACATCTTTTTGGACCCATTTTGTTGGAATGCGTATGGGGACTTGCAAACCCTAACAATCCCTCCACTTGGGTGC
TTGCTTGAAGCCTCCTCCAGGTCTATCTTGGAGACTCAAAGGGATTATTGCTAA
Protein sequenceShow/hide protein sequence
MNSSFCSFALCITLIIFFFPVHGRWHNHAKNHKHSHHHPHFTISQPPSPSPSPPLSPSPEPTNPPDDDDGGSSFNATGFFDVRHYGAIGDGTTDDTEAFKMAWDTAFNNM
SLRGNGVIDGRGQKWWDLPCKPHRGGKGRTKAGPCDSPIAIRFFMSSNLTVEGLRIKDSPQFHFSDSMPCVNLTLANIELFPSKGDIFLDPFCWNAYGDLQTLTIPPLGC
LLEASSRSILETQRDYC