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Carg11196 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11196
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L44
Genome locationCarg_Chr14:5262734..5264547
RNA-Seq ExpressionCarg11196
SyntenyCarg11196
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000552 - Ribosomal protein L44e
IPR011332 - Zinc-binding ribosomal protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4385822.1 hypothetical protein F8388_010378 [Cannabis sativa]1.5e-52100Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

KAF4397433.1 hypothetical protein G4B88_027173 [Cannabis sativa]1.5e-52100Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

KAG6581552.1 Serine carboxypeptidase-like 35, partial [Cucurbita argyrosperma subsp. sororia]1.5e-52100Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

KZV34690.1 hypothetical protein F511_00592 [Dorcoceras hygrometricum]1.5e-52100Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

XP_019152128.1 PREDICTED: 60S ribosomal protein L44-like isoform X1 [Ipomoea nil]1.5e-52100Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

TrEMBL top hitse value%identityAlignment
A0A6J1GQU0 60S ribosomal protein L447.1e-53100Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

A0A6J1KSV1 60S ribosomal protein L447.1e-53100Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

A0A7J6GSC6 Uncharacterized protein7.1e-53100Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

A0A7J6HQ78 Uncharacterized protein7.1e-53100Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

A0A803QLA4 Uncharacterized protein7.1e-53100Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

SwissProt top hitse value%identityAlignment
A8PCG3 60S ribosomal protein L441.9e-4277.88Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q ++KRCKHFE+GG+KK K
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSL
        G +L
Subjt:  GTSL

O23290 60S ribosomal protein L36a1.3e-5193.33Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

O59870 60S ribosomal protein L446.4e-4378.85Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK K
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSL
        G ++
Subjt:  GTSL

Q96499 60S ribosomal protein L441.6e-5498.1Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

Q9UWE4 60S ribosomal protein L441.9e-4277.88Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q ++KRCKHFE+GG+KK K
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSL
        G +L
Subjt:  GTSL

Arabidopsis top hitse value%identityAlignment
AT3G23390.1 Zinc-binding ribosomal protein family protein9.1e-5393.33Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

AT4G14320.1 Zinc-binding ribosomal protein family protein9.1e-5393.33Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

AT4G14320.2 Zinc-binding ribosomal protein family protein1.8e-4592.47Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEI
        MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEI
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAACGTTCCCAAGACAAAGAAGACTTATTGCAAGAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTCACACAATATAAGAAGGGGAAGGATAGTCTTGCTGC
ACAGGGAAAGCGTCGGTACGATCGCAAACAATCAGGATATGGAGGTCAGACCAAGCCTGTGTTTCACAAGAAGGCAAAAACTACCAAGAAGATTGTGTTGAGGCTGCAAT
GCCAAGGTTGCAAACACGTATCCCAGCACGCTATCAAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACTTCTCTTTTCTAG
mRNA sequenceShow/hide mRNA sequence
GTTTGCCATTAATTAGGGTTTTCGAGCAGGCCTCGTCGACGTCCAGCCGTCATGGTGAACGTTCCCAAGACAAAGAAGACTTATTGCAAGAGCAAGGAGTGCAAGAAGCA
CACCTTGCACAAGGTCACACAATATAAGAAGGGGAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAACAATCAGGATATGGAGGTCAGACCAAGCCTG
TGTTTCACAAGAAGGCAAAAACTACCAAGAAGATTGTGTTGAGGCTGCAATGCCAAGGTTGCAAACACGTATCCCAGCACGCTATCAAGAGATGCAAGCACTTCGAAATC
GGTGGAGACAAGAAGGGGAAGGGAACTTCTCTTTTCTAGACCCTTTATCAGTTTTTATCTTTTGTCATTTCTTTTTCGTAAGATCAGTTATGGAGATTTTGCAGCATTAC
TCTGTTTTGTTAATGAATTAGCTCTACATGTCCTAACGATACTATTTAGCTGAAACTTTCTCATATTTATTGTTGAATTTTCAAAGTTCTGATGCTCTTCGTATG
Protein sequenceShow/hide protein sequence
MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF