; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg11206 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11206
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein RETICULATA-RELATED 4, chloroplastic-like
Genome locationCarg_Chr14:5334381..5336223
RNA-Seq ExpressionCarg11206
SyntenyCarg11206
Gene Ontology termsGO:0031969 - chloroplast membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581562.1 Protein RETICULATA-RELATED 4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.0e-8498.3Show/hide
Query:  MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHD--GGGGGGGGGGGHEGGEEEDREKNRAEAIAVL
        MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHD  GGGGGGGGGGGHEGGEEEDREKNRAEAIAVL
Subjt:  MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHD--GGGGGGGGGGGHEGGEEEDREKNRAEAIAVL

Query:  AEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA
        AEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTK A
Subjt:  AEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA

KAG7018067.1 Protein RETICULATA-RELATED 4, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]6.7e-93100Show/hide
Query:  MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGGGGGGGGHEGGEEEDREKNRAEAIAVLAE
        MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGGGGGGGGHEGGEEEDREKNRAEAIAVLAE
Subjt:  MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGGGGGGGGHEGGEEEDREKNRAEAIAVLAE

Query:  AGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKATVASCVSKARMS
        AGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKATVASCVSKARMS
Subjt:  AGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKATVASCVSKARMS

XP_022934115.1 protein RETICULATA-RELATED 4, chloroplastic-like [Cucurbita moschata]2.3e-8598.85Show/hide
Query:  MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGGGGGGGGHEGGEEEDREKNRAEAIAVLAE
        MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTC APSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGGGGGGGGHEGGEEEDREKNRAEAIAVLAE
Subjt:  MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGGGGGGGGHEGGEEEDREKNRAEAIAVLAE

Query:  AGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA
        AGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTK A
Subjt:  AGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA

XP_022982741.1 protein RETICULATA-RELATED 4, chloroplastic-like [Cucurbita maxima]1.7e-8397.7Show/hide
Query:  MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGGGGGGGGHEGGEEEDREKNRAEAIAVLAE
        MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHD GGGGGGGG GHEGGEEEDREKNRAEAIAVLAE
Subjt:  MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGGGGGGGGHEGGEEEDREKNRAEAIAVLAE

Query:  AGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA
        AGRSTESLPKDLAAAIAAGRVP VIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTK A
Subjt:  AGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA

XP_023526496.1 protein RETICULATA-RELATED 4, chloroplastic-like [Cucurbita pepo subsp. pepo]7.5e-8498.29Show/hide
Query:  MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGGGGGGG-GHEGGEEEDREKNRAEAIAVLA
        MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGGGGGGG GHEGGEEEDREKNRAEAIAVLA
Subjt:  MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGGGGGGG-GHEGGEEEDREKNRAEAIAVLA

Query:  EAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA
        EAGRSTESLPKDLAAAIAAGRVP VIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTK A
Subjt:  EAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA

TrEMBL top hitse value%identityAlignment
A0A0A0LCC3 Uncharacterized protein6.4e-5778.57Show/hide
Query:  MAIRNFTNLSTPSPFLRRSPPL-NFTYILTCRTCTAPSLRF---HSP-RRRRSLGISVAFASSGG-IPPGGHDGGGGGG--GGGGGHEGGEEEDREKNRA
        MAIRN TNLS P PFL RSPP  NF YILT  T T PSLR     SP R RR+L IS+AFASS G IPPGGH GGGGG   G GGG EG  EEDREKNRA
Subjt:  MAIRNFTNLSTPSPFLRRSPPL-NFTYILTCRTCTAPSLRF---HSP-RRRRSLGISVAFASSGG-IPPGGHDGGGGGG--GGGGGHEGGEEEDREKNRA

Query:  EAIAVLAEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA
        EA  VLAEAGRSTESLPKDLA AIAAGRVP VIVERFLE+EKSAVLRWLMQFGGFKER+LADDLFLAK+AMECGVGIFTK A
Subjt:  EAIAVLAEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA

A0A1S3CG26 protein RETICULATA-RELATED 4, chloroplastic-like1.9e-5677.78Show/hide
Query:  MAIRNFTNLSTPSPFLRRSPPL-NFTYILTCRTCTAPSLRF---HSP-RRRRSLGISVAFASSGG-IPPGGHDGGGGGGGGGGGHEGGEEEDREKNRAEA
        MAIRNF+NLS P PFL  SPP  NFTYILT  T + PSLR     SP R RR+L IS+AFASS G IPPGGH  GGGG G G G E  EEEDREKNRAEA
Subjt:  MAIRNFTNLSTPSPFLRRSPPL-NFTYILTCRTCTAPSLRF---HSP-RRRRSLGISVAFASSGG-IPPGGHDGGGGGGGGGGGHEGGEEEDREKNRAEA

Query:  IAVLAEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA
        IAVLAEAGRS ESLPKDLA AIAAGRVP VIVERFLE+EKSA LRWLMQFGGFKER+LADDLFLAK+AMECGVGIFTK A
Subjt:  IAVLAEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA

A0A5A7TXM9 Protein RETICULATA-RELATED 41.9e-5677.78Show/hide
Query:  MAIRNFTNLSTPSPFLRRSPPL-NFTYILTCRTCTAPSLRF---HSP-RRRRSLGISVAFASSGG-IPPGGHDGGGGGGGGGGGHEGGEEEDREKNRAEA
        MAIRNF+NLS P PFL  SPP  NFTYILT  T + PSLR     SP R RR+L IS+AFASS G IPPGGH  GGGG G G G E  EEEDREKNRAEA
Subjt:  MAIRNFTNLSTPSPFLRRSPPL-NFTYILTCRTCTAPSLRF---HSP-RRRRSLGISVAFASSGG-IPPGGHDGGGGGGGGGGGHEGGEEEDREKNRAEA

Query:  IAVLAEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA
        IAVLAEAGRS ESLPKDLA AIAAGRVP VIVERFLE+EKSA LRWLMQFGGFKER+LADDLFLAK+AMECGVGIFTK A
Subjt:  IAVLAEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA

A0A6J1F6R6 protein RETICULATA-RELATED 4, chloroplastic-like1.1e-8598.85Show/hide
Query:  MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGGGGGGGGHEGGEEEDREKNRAEAIAVLAE
        MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTC APSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGGGGGGGGHEGGEEEDREKNRAEAIAVLAE
Subjt:  MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGGGGGGGGHEGGEEEDREKNRAEAIAVLAE

Query:  AGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA
        AGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTK A
Subjt:  AGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA

A0A6J1J072 protein RETICULATA-RELATED 4, chloroplastic-like8.1e-8497.7Show/hide
Query:  MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGGGGGGGGHEGGEEEDREKNRAEAIAVLAE
        MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHD GGGGGGGG GHEGGEEEDREKNRAEAIAVLAE
Subjt:  MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGGGGGGGGHEGGEEEDREKNRAEAIAVLAE

Query:  AGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA
        AGRSTESLPKDLAAAIAAGRVP VIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTK A
Subjt:  AGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA

SwissProt top hitse value%identityAlignment
Q8RWG3 Protein RETICULATA-RELATED 6, chloroplastic1.1e-0536.14Show/hide
Query:  NRAEAIAVLAEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQ-FGGFKERLLADDLFLAKMAMECGVGIFT
        +RAE   V+  AGR  ++LP D+   +  G V   +++   ++E+  ++  L Q F GF+ERLLAD  FL ++A+E  + I T
Subjt:  NRAEAIAVLAEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQ-FGGFKERLLADDLFLAKMAMECGVGIFT

Q94CJ5 Protein RETICULATA-RELATED 4, chloroplastic1.8e-3253.93Show/hide
Query:  TNLSTP--SPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGG-GGGGGGHEGGE-------EEDREKNRAEAIA
        +NL+ P  + F R S   +F  ++     +A S+ F+    RR     V  ASSG    GG D  GGG  GGGGG +GG+       +EDR++NR EA+ 
Subjt:  TNLSTP--SPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGG-GGGGGGHEGGE-------EEDREKNRAEAIA

Query:  VLAEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA
        +L E+G   ESLPKDLAAAI AGR+PG ++ RFLE++KSAV+RWLMQFGGF+ERLLADDLF+AK+AMECGVGIFTK A
Subjt:  VLAEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA

Q9SIY5 Protein RETICULATA-RELATED 5, chloroplastic7.7e-0738.55Show/hide
Query:  NRAEAIAVLAEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQ-FGGFKERLLADDLFLAKMAMECGVGIFT
        +RAE   V+  AGR  ++LP+D+   +  G V   I++ F ++E+  ++  L Q F GF+ERLLAD  FL ++A+E  + I T
Subjt:  NRAEAIAVLAEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQ-FGGFKERLLADDLFLAKMAMECGVGIFT

Arabidopsis top hitse value%identityAlignment
AT2G40400.1 Protein of unknown function (DUF399 and DUF3411)5.5e-0838.55Show/hide
Query:  NRAEAIAVLAEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQ-FGGFKERLLADDLFLAKMAMECGVGIFT
        +RAE   V+  AGR  ++LP+D+   +  G V   I++ F ++E+  ++  L Q F GF+ERLLAD  FL ++A+E  + I T
Subjt:  NRAEAIAVLAEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQ-FGGFKERLLADDLFLAKMAMECGVGIFT

AT2G40400.2 Protein of unknown function (DUF399 and DUF3411)5.5e-0838.55Show/hide
Query:  NRAEAIAVLAEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQ-FGGFKERLLADDLFLAKMAMECGVGIFT
        +RAE   V+  AGR  ++LP+D+   +  G V   I++ F ++E+  ++  L Q F GF+ERLLAD  FL ++A+E  + I T
Subjt:  NRAEAIAVLAEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQ-FGGFKERLLADDLFLAKMAMECGVGIFT

AT5G12470.1 Protein of unknown function (DUF3411)1.3e-3353.93Show/hide
Query:  TNLSTP--SPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGG-GGGGGGHEGGE-------EEDREKNRAEAIA
        +NL+ P  + F R S   +F  ++     +A S+ F+    RR     V  ASSG    GG D  GGG  GGGGG +GG+       +EDR++NR EA+ 
Subjt:  TNLSTP--SPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGG-GGGGGGHEGGE-------EEDREKNRAEAIA

Query:  VLAEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA
        +L E+G   ESLPKDLAAAI AGR+PG ++ RFLE++KSAV+RWLMQFGGF+ERLLADDLF+AK+AMECGVGIFTK A
Subjt:  VLAEAGRSTESLPKDLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATCCGAAATTTCACTAATCTCTCCACACCGTCGCCGTTTCTCCGCCGTTCACCTCCGCTGAATTTTACTTACATTCTCACCTGCCGAACCTGCACTGCTCCATC
TCTCCGCTTCCACTCTCCCCGCCGTCGCCGAAGCCTCGGAATCTCCGTCGCATTCGCTTCATCCGGTGGAATTCCACCCGGAGGACATGACGGAGGCGGCGGCGGTGGTG
GAGGCGGCGGCGGACACGAAGGAGGCGAGGAGGAGGATCGGGAGAAGAACAGAGCGGAGGCGATTGCGGTGCTGGCGGAGGCCGGGAGGTCGACAGAGAGTTTGCCGAAG
GATCTGGCGGCGGCGATTGCGGCGGGGAGAGTACCGGGGGTGATCGTGGAGAGATTCTTGGAGATGGAGAAATCGGCGGTGTTGCGGTGGTTGATGCAGTTCGGCGGATT
TAAAGAACGGCTTCTGGCGGACGACTTGTTCTTGGCTAAGATGGCCATGGAATGTGGCGTTGGAATTTTCACAAAGAAAGCTACTGTGGCCTCATGCGTGAGCAAGGCGC
GCATGAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGATCCGAAATTTCACTAATCTCTCCACACCGTCGCCGTTTCTCCGCCGTTCACCTCCGCTGAATTTTACTTACATTCTCACCTGCCGAACCTGCACTGCTCCATC
TCTCCGCTTCCACTCTCCCCGCCGTCGCCGAAGCCTCGGAATCTCCGTCGCATTCGCTTCATCCGGTGGAATTCCACCCGGAGGACATGACGGAGGCGGCGGCGGTGGTG
GAGGCGGCGGCGGACACGAAGGAGGCGAGGAGGAGGATCGGGAGAAGAACAGAGCGGAGGCGATTGCGGTGCTGGCGGAGGCCGGGAGGTCGACAGAGAGTTTGCCGAAG
GATCTGGCGGCGGCGATTGCGGCGGGGAGAGTACCGGGGGTGATCGTGGAGAGATTCTTGGAGATGGAGAAATCGGCGGTGTTGCGGTGGTTGATGCAGTTCGGCGGATT
TAAAGAACGGCTTCTGGCGGACGACTTGTTCTTGGCTAAGATGGCCATGGAATGTGGCGTTGGAATTTTCACAAAGAAAGCTACTGTGGCCTCATGCGTGAGCAAGGCGC
GCATGAGCTAA
Protein sequenceShow/hide protein sequence
MAIRNFTNLSTPSPFLRRSPPLNFTYILTCRTCTAPSLRFHSPRRRRSLGISVAFASSGGIPPGGHDGGGGGGGGGGGHEGGEEEDREKNRAEAIAVLAEAGRSTESLPK
DLAAAIAAGRVPGVIVERFLEMEKSAVLRWLMQFGGFKERLLADDLFLAKMAMECGVGIFTKKATVASCVSKARMS