CuGenDBv2

Gene ID	Carg11208
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosomal protein
Genome location	Carg_Chr14:5338458..5340931
RNA-Seq Expression	Carg11208
Synteny	Carg11208
Gene Ontology terms	GO:0000470 - maturation of LSU-rRNA (biological process) GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR016095 - Ribosomal protein L1, 3-layer alpha/beta-sandwich IPR023673 - Ribosomal protein L1, conserved site IPR023674 - Ribosomal protein L1-like IPR028364 - Ribosomal protein L1/ribosomal biogenesis protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7018069.1 50S ribosomal protein L1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

3.6e-34

100

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Query:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS
        MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS
Subjt:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS

XP_022152718.1 LOW QUALITY PROTEIN: 50S ribosomal protein L1, chloroplastic-like [Momordica charantia]

2.3e-28

87.67

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Query:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS
        M+FD+LIASPDM+P+VASLGKLLGPRG MPNPKAGTVA NLPQA+AEFKQGKVEYRA KTGIVHLPFGK DFS
Subjt:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS

XP_022948661.1 50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata]

2.3e-28

87.67

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Query:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS
        M+FD+LIASPDM+P+VASLGKLLGPRG MPNPKAGTVA NLPQA+AEFKQGKVEYRA KTGIVHLPFGK DFS
Subjt:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS

XP_022998464.1 50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima]

2.3e-28

87.67

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Query:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS
        M+FD+LIASPDM+P+VASLGKLLGPRG MPNPKAGTVA NLPQA+AEFKQGKVEYRA KTGIVHLPFGK DFS
Subjt:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS

XP_038905945.1 50S ribosomal protein L1, chloroplastic-like [Benincasa hispida]

2.3e-28

87.67

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Query:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS
        M+FD+LIASPDM+P+VASLGKLLGPRG MPNPKAGTVA NLPQA+AEFKQGKVEYRA KTGIVHLPFGK DFS
Subjt:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS

TrEMBL top hits

e value

%identity

Alignment

A0A151TLS8 Ribosomal protein

1.4e-28

84.93

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Query:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS
        M FD+LIASPDM+P+VASLGK+LGPRG MPNPKAGTV PN+PQA+AEFKQGKVEYRA KTGIVHLPFGK DFS
Subjt:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS

A0A4D6LKV0 Ribosomal protein

1.4e-28

84.93

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Query:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS
        M FD+LIASPDM+P+VASLGK+LGPRG MPNPKAGTV PN+PQA+AEFKQGKVEYRA KTGIVHLPFGK DFS
Subjt:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS

A0A6J1DFM3 Ribosomal protein

1.1e-28

87.67

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Query:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS
        M+FD+LIASPDM+P+VASLGKLLGPRG MPNPKAGTVA NLPQA+AEFKQGKVEYRA KTGIVHLPFGK DFS
Subjt:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS

A0A6J1G9U2 Ribosomal protein

1.1e-28

87.67

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Query:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS
        M+FD+LIASPDM+P+VASLGKLLGPRG MPNPKAGTVA NLPQA+AEFKQGKVEYRA KTGIVHLPFGK DFS
Subjt:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS

A0A6J1KEE5 Ribosomal protein

1.1e-28

87.67

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Query:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS
        M+FD+LIASPDM+P+VASLGKLLGPRG MPNPKAGTVA NLPQA+AEFKQGKVEYRA KTGIVHLPFGK DFS
Subjt:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS

SwissProt top hits

e value

%identity

Alignment

A6MVP8 50S ribosomal protein L1, chloroplastic

1.5e-22

63.01

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Query:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS
        ++FD+LIA+PDM+P +A LGK+LGPRG MP+PK+GTV  ++ +A+ EFK+GK+EYRA K+GIVH+ FGK DFS
Subjt:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS

B0CAD0 50S ribosomal protein L1

1.1e-22

65.75

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Query:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS
        M+FD LIA+PDM+P+VA +G++LGPRG MP+PKAGTV  +LPQA+ EFK GK+E+RA +TGIVH+ FGK  FS
Subjt:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS

Q0I6K8 50S ribosomal protein L1

1.5e-22

65.75

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Query:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS
        MNFD LIA+PDM+P+VA LG++LGPRG MPNPKAGTV  +L  A+ EFK GK+E+RA +TGIVH+ FGK  F+
Subjt:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS

Q9LE95 50S ribosomal protein L1, chloroplastic

2.3e-23

68.06

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Query:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDF
        M+FD+LIA+ DM+ +VASLG++LGPRG MP PKAGTV PN+ QA+ EFK+GKVE+R  KTGIVH+PFGK +F
Subjt:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDF

Q9LY66 50S ribosomal protein L1, chloroplastic

6.5e-26

72.6

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Query:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS
        M FD+LIASPDM+ +VA LGK+LGPRG MPNPKAGTV  N+PQA+ EFK+GKVE+RA KTGIVH+PFGK +F+
Subjt:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS

Arabidopsis top hits

e value

%identity

Alignment

AT2G42710.1 Ribosomal protein L1p/L10e family

8.4e-13

39.73

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Query:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS
        ++FD+ +A+P M+P V  + ++L   G MPNPK G+V  ++ +A+ + K G  ++R  KT I+H+P GK  FS
Subjt:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS

AT3G63490.1 Ribosomal protein L1p/L10e family

4.6e-27

72.6

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Query:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS
        M FD+LIASPDM+ +VA LGK+LGPRG MPNPKAGTV  N+PQA+ EFK+GKVE+RA KTGIVH+PFGK +F+
Subjt:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS

AT3G63490.2 Ribosomal protein L1p/L10e family

4.0e-15

55.07

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Query:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGK
        M FD+LIASPDM+ +VA LGK+LGPRG MPNPKAGTV  N+PQ+    ++GK+     K G+     GK
Subjt:  MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGK

Sequences

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CDS sequence

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ATGAATTTTGACCAATTGATTGCTTCCCCAGACATGGTGCCTGAGGTTGCTAGCCTCGGGAAGCTCCTAGGACCTCGAGGATTCATGCCGAATCCGAAAGCCGGTACTGT
AGCACCCAATTTGCCTCAGGCATTAGCAGAATTCAAGCAGGGGAAAGTTGAATACAGAGCATATAAAACTGGTATAGTTCACTTACCATTTGGAAAACCTGACTTCAGCT
AA

mRNA sequence

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GGTAGAAGAAGAACTTTGCAACCTCACTCTCCATCAATGGCGGCCTGTAATTCCACTTCTCCTTCTTCCCTAATGTTCACTTTCTTCTGTAGATAACCAAGATCTCATCT
CTTTCAAGGGGATACTCCGATATTCCACCATCAAATCCTTCTCCTCCTGCCATTTTCTTTGCAGTCCTAGGAGATCAGATGATTGGGTATTGTTTAATTTTCAGAGACGA
GCGAGGCACCATGTGATTGTCGCTGCTCTCGCCGCCGCCGTGAGTGTCGCCGAGGTGGACGCCGAGGAAAACGAGGGGGTCGTTGCGCCTAAACCTAAGAAGGTGAGAAA
ATTGATGAAGCAAAGAATGCTGGAGCTGATTTGGTTGGTGGGGAGGACATTATAGAACAGCTAAAAGGAGGATTTATGAATTTTGACCAATTGATTGCTTCCCCAGACAT
GGTGCCTGAGGTTGCTAGCCTCGGGAAGCTCCTAGGACCTCGAGGATTCATGCCGAATCCGAAAGCCGGTACTGTAGCACCCAATTTGCCTCAGGCATTAGCAGAATTCA
AGCAGGGGAAAGTTGAATACAGAGCATATAAAACTGGTATAGTTCACTTACCATTTGGAAAACCTGACTTCAGCTAAGAGGACCTTCTTATAAACTTGCTGGCTGCCATA
AAATCAGTAGAAACCAATAAGCCATCAGGTGCAAAAGGTGTATACTGGAAGAGCGCTCACATATGCTCGTCGATGGGGCCTTCAATTCGGTTAAATATAAGGGAGATGTT
AGATTTCGAATGTCCCTGGAGCGCTTGACGAATAACAGACCTGTACTGTTCTTATGTTTGTTGAATCAGCCTCTTGGGGGATCCATTGGAAGATAATGGTGCCCATATGT
GAGCAACATTGAAAAGAGGATAAGAGAAGAAGCTAGGAAGGAGAGTCGGGAGATATCAGATAGTTATCGACTACACAGAAACAAGCATACTGCATAGTTTTCTCTACCGA
CTCACTTTGTATTAATGGTGTTGGGTTCTTATGGATCTACCACGCTTTGATTGACCTCTTGCCAAGGGGAAAAAAATGATTAATGTACTCAACTGTATTGACCAGCTGCT
GCTCCTTAATTTGGGGCATTTTGAAAGTGGTTGGTTCTTAT

Protein sequence

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MNFDQLIASPDMVPEVASLGKLLGPRGFMPNPKAGTVAPNLPQALAEFKQGKVEYRAYKTGIVHLPFGKPDFS

Carg11208 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome