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Carg11212 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11212
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRibosomal protein S21 family protein isoform 1
Genome locationCarg_Chr14:5376525..5378670
RNA-Seq ExpressionCarg11212
SyntenyCarg11212
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001911 - Ribosomal protein S21


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573697.1 hypothetical protein SDJN03_27584, partial [Cucurbita argyrosperma subsp. sororia]5.0e-4088.89Show/hide
Query:  MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
        MNSL+RN+SCSIRSS+H      LH  QQQWRGIRVKVLNGNLERA+TFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
Subjt:  MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI

Query:  LIKKVRGL
        LIKKVRGL
Subjt:  LIKKVRGL
KAG6581566.1 Cycloartenol-C-24-methyltransferase, partial [Cucurbita argyrosperma subsp. sororia]1.3e-48100Show/hide
Query:  MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
        MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
Subjt:  MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI

Query:  LIKKVRGL
        LIKKVRGL
Subjt:  LIKKVRGL
XP_022934889.1 uncharacterized protein LOC111441929 [Cucurbita moschata]1.3e-48100Show/hide
Query:  MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
        MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
Subjt:  MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI

Query:  LIKKVRGL
        LIKKVRGL
Subjt:  LIKKVRGL
XP_022945130.1 uncharacterized protein LOC111449463 [Cucurbita moschata]5.0e-4088.89Show/hide
Query:  MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
        MNSL+RN+SCSIRSS+H      LH  QQQWRGIRVKVLNGNLERA+TFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
Subjt:  MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI

Query:  LIKKVRGL
        LIKKVRGL
Subjt:  LIKKVRGL
XP_022982723.1 uncharacterized protein LOC111481507 [Cucurbita maxima]1.9e-4797.22Show/hide
Query:  MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
        MNSLSRNLSCSIRSS+HTNCL+HLHYQQQQWRGIRVKVLNGNLERALTFLQRKM+SSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
Subjt:  MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI

Query:  LIKKVRGL
        LIKKVRGL
Subjt:  LIKKVRGL
TrEMBL top hitse value%identityAlignment
A0A6J1DEG8 uncharacterized protein LOC1110196994.1e-4086.61Show/hide
Query:  MNSLSRNLSCSIRSSLHT----NCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
        MNSL+RN+SC IR S+HT    + LQ+LH QQQQWRGIRVKVLNGNLERAL FLQRKM+SSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
Subjt:  MNSLSRNLSCSIRSSLHT----NCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK

Query:  LKAILIKKVRGL
        LKAILIKKVRGL
Subjt:  LKAILIKKVRGL
A0A6J1F3V2 uncharacterized protein LOC1114419296.4e-49100Show/hide
Query:  MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
        MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
Subjt:  MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI

Query:  LIKKVRGL
        LIKKVRGL
Subjt:  LIKKVRGL
A0A6J1G018 uncharacterized protein LOC1114494632.4e-4088.89Show/hide
Query:  MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
        MNSL+RN+SCSIRSS+H      LH  QQQWRGIRVKVLNGNLERA+TFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
Subjt:  MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI

Query:  LIKKVRGL
        LIKKVRGL
Subjt:  LIKKVRGL
A0A6J1HQF3 uncharacterized protein LOC1114664317.1e-4087.96Show/hide
Query:  MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
        MNSL+RN+SCSIRSS+H      LH  QQQWRGIRVKVLNGNLERA+TFLQRKM+SSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
Subjt:  MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI

Query:  LIKKVRGL
        LIKKVRGL
Subjt:  LIKKVRGL
A0A6J1J5L6 uncharacterized protein LOC1114815079.2e-4897.22Show/hide
Query:  MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
        MNSLSRNLSCSIRSS+HTNCL+HLHYQQQQWRGIRVKVLNGNLERALTFLQRKM+SSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI
Subjt:  MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAI

Query:  LIKKVRGL
        LIKKVRGL
Subjt:  LIKKVRGL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G26360.1 Ribosomal protein S21 family protein1.7e-2572.94Show/hide
Query:  LHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL
        L+ Q QQ RGIRVKV + +L++ALT LQ+KM+SSG+ERLIK  QTHHIKNSEK+VLARKNLER+I+S D ARKL++ILIKKVRGL
Subjt:  LHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTCGTTGTCGCGAAACCTATCTTGCTCCATCAGATCTTCGTTGCACACCAATTGCCTGCAGCACCTTCACTATCAGCAGCAGCAATGGAGGGGGATCAGAGTGAA
GGTACTGAATGGAAATTTGGAGCGGGCACTGACATTTTTGCAAAGGAAGATGCGATCGAGCGGAATTGAGCGGCTGATTAAGCGTGAACAGACTCATCATATAAAGAATT
CTGAGAAACGAGTTTTGGCCAGAAAGAATTTGGAGCGCAAAATTCGATCGCAGGACCTCGCTCGCAAGCTCAAAGCCATCCTTATAAAGAAAGTCAGGGGTCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATCACTTTCTTTCTCGCCGTCGTTTCCCTTCATCCCAAGTTTCGACTCTCTAACCGCAGCTACCGTCGCCGTCCTTCACTGTGCCTTATCGGCGCCGACATAGCCCACTT
CACCTGCTGTATGAACGACAAACCGAGTGGTTGAACTCTAGTAATGAATTCGTTGTCGCGAAACCTATCTTGCTCCATCAGATCTTCGTTGCACACCAATTGCCTGCAGC
ACCTTCACTATCAGCAGCAGCAATGGAGGGGGATCAGAGTGAAGGTACTGAATGGAAATTTGGAGCGGGCACTGACATTTTTGCAAAGGAAGATGCGATCGAGCGGAATT
GAGCGGCTGATTAAGCGTGAACAGACTCATCATATAAAGAATTCTGAGAAACGAGTTTTGGCCAGAAAGAATTTGGAGCGCAAAATTCGATCGCAGGACCTCGCTCGCAA
GCTCAAAGCCATCCTTATAAAGAAAGTCAGGGGTCTGTAAGCATGTGGTATGTGGCATTATAGTTTCACAGGCATCTCCTCTTAACTATGGCTGCCTCTTAAAAGTGCAA
TTGAAGTTCCTTTATTCAGCAGGAAGGCGCCAACGAGCTGTTTATCTTACATGGCTTTCTATCGTTCTGTTTTCTCTTATCTGAGCAATATTGCTGCCCGCTATGGTACC
TCCCAAATTCTGTTGTTCCTCTTTTGAAATATATTAAAAATTGCCCATAAGGGTCCTATAATAGTGAGTTTAAAGGGAGCGGACTCGAATCAATGTTGGCCACTTAGATT
TAACATCTTACACCTGTTTTTGGTGTCTAGATGTTGTATGGGTCAAGTGGGTTATCTCGTGATATTAGTCGTAAGGGTCAAGTGGGTTATCTCGTGATATTAGTCGTAAG
GGTCATGGGTATAATAAGGAGTTTAGAGGGAGTGAATTTAATCAATGGTGACCACTTAGATTTAACATCTTACTCGTGTTTTTGGTGTCTAGATGTTGT
Protein sequenceShow/hide protein sequence
MNSLSRNLSCSIRSSLHTNCLQHLHYQQQQWRGIRVKVLNGNLERALTFLQRKMRSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVRGL