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Carg11215 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11215
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRecombination protein like
Genome locationCarg_Chr14:5392071..5392427
RNA-Seq ExpressionCarg11215
SyntenyCarg11215
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048367.1 putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa]1.0e-4174.6Show/hide
Query:  MAALSAGHRHFF------PAVQFGNRSISPRPIVLLCCHNHN-QDPSDSSEEKT-KKDQEGKQMVPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLS
        MAALSAGHRHFF        VQF NRSISPR I +LC HN +  DP+D S+EKT KK QE K+MV GF+QR++KMG++LKEKLSPQRKGDWKD+TLMSLS
Subjt:  MAALSAGHRHFF------PAVQFGNRSISPRPIVLLCCHNHN-QDPSDSSEEKT-KKDQEGKQMVPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLS

Query:  FAVYVYISQKIVCAYFLWMSMPKQLW
        FAVYVYISQKIVCAYFLWMSMPK LW
Subjt:  FAVYVYISQKIVCAYFLWMSMPKQLW

KAG6581569.1 hypothetical protein SDJN03_21571, partial [Cucurbita argyrosperma subsp. sororia]4.3e-61100Show/hide
Query:  MAALSAGHRHFFPAVQFGNRSISPRPIVLLCCHNHNQDPSDSSEEKTKKDQEGKQMVPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLSFAVYVYIS
        MAALSAGHRHFFPAVQFGNRSISPRPIVLLCCHNHNQDPSDSSEEKTKKDQEGKQMVPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLSFAVYVYIS
Subjt:  MAALSAGHRHFFPAVQFGNRSISPRPIVLLCCHNHNQDPSDSSEEKTKKDQEGKQMVPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLSFAVYVYIS

Query:  QKIVCAYFLWMSMPKQLW
        QKIVCAYFLWMSMPKQLW
Subjt:  QKIVCAYFLWMSMPKQLW

KAG6606884.1 hypothetical protein SDJN03_00226, partial [Cucurbita argyrosperma subsp. sororia]1.9e-4580.17Show/hide
Query:  MAALSAGHRHFF--PAVQFGNRSISPRPIVLLCCHNHN-QDPSDSSEEKTKKDQEGKQMVPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLSFAVYV
        MAALSAGHR+FF   AV F NRSISPR IVLLC HN N  DPSD SEEK KK+QE KQ +PGF+QR++KMG+ELKEKLSPQRKGDWKD+TLMSLSFAVYV
Subjt:  MAALSAGHRHFF--PAVQFGNRSISPRPIVLLCCHNHN-QDPSDSSEEKTKKDQEGKQMVPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLSFAVYV

Query:  YISQKIVCAYFLWMSMPKQLW
        YISQKIVCAYF+WMSMPKQ+W
Subjt:  YISQKIVCAYFLWMSMPKQLW

KGN58582.1 hypothetical protein Csa_001602 [Cucumis sativus]1.9e-4073.02Show/hide
Query:  MAALSAGHRHFF------PAVQFGNRSISPRPIVLLCCHNHN-QDPSDSSEEKT-KKDQEGKQMVPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLS
        MAALSAGHRHFF        + F NRSISPR I +LC HN +  DP+D SEEKT KK QE K+MV GF+QR++KMG++LKEKLSPQRKGDWKD+TLMSLS
Subjt:  MAALSAGHRHFF------PAVQFGNRSISPRPIVLLCCHNHN-QDPSDSSEEKT-KKDQEGKQMVPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLS

Query:  FAVYVYISQKIVCAYFLWMSMPKQLW
        FAVYVYISQKIVCAYFLWM+MPK LW
Subjt:  FAVYVYISQKIVCAYFLWMSMPKQLW

XP_022152649.1 uncharacterized protein LOC111020315 [Momordica charantia]1.5e-3470.16Show/hide
Query:  MAALSAGHRHFF----PAVQFGNRSISPRPIVLLCCHNHNQDPSDSSEEKTKKDQEGKQM-VPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLSFAV
        MAALSAGHRHFF     A Q   R  SP+ IVLLC   H+QDP   SEE +K+ +E KQ  + GF++R++KMGMELKEKLSPQRKGDWKDV LMSLSFAV
Subjt:  MAALSAGHRHFF----PAVQFGNRSISPRPIVLLCCHNHNQDPSDSSEEKTKKDQEGKQM-VPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLSFAV

Query:  YVYISQKIVCAYFLWMSMPK-QLW
        YVYISQKIVCAYF+WMSMPK QLW
Subjt:  YVYISQKIVCAYFLWMSMPK-QLW

TrEMBL top hitse value%identityAlignment
A0A0A0LD14 Uncharacterized protein9.1e-4173.02Show/hide
Query:  MAALSAGHRHFF------PAVQFGNRSISPRPIVLLCCHNHN-QDPSDSSEEKT-KKDQEGKQMVPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLS
        MAALSAGHRHFF        + F NRSISPR I +LC HN +  DP+D SEEKT KK QE K+MV GF+QR++KMG++LKEKLSPQRKGDWKD+TLMSLS
Subjt:  MAALSAGHRHFF------PAVQFGNRSISPRPIVLLCCHNHN-QDPSDSSEEKT-KKDQEGKQMVPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLS

Query:  FAVYVYISQKIVCAYFLWMSMPKQLW
        FAVYVYISQKIVCAYFLWM+MPK LW
Subjt:  FAVYVYISQKIVCAYFLWMSMPKQLW

A0A5D3BX35 Putative RNA/RNP complex-1-interacting phosphatase4.8e-4274.6Show/hide
Query:  MAALSAGHRHFF------PAVQFGNRSISPRPIVLLCCHNHN-QDPSDSSEEKT-KKDQEGKQMVPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLS
        MAALSAGHRHFF        VQF NRSISPR I +LC HN +  DP+D S+EKT KK QE K+MV GF+QR++KMG++LKEKLSPQRKGDWKD+TLMSLS
Subjt:  MAALSAGHRHFF------PAVQFGNRSISPRPIVLLCCHNHN-QDPSDSSEEKT-KKDQEGKQMVPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLS

Query:  FAVYVYISQKIVCAYFLWMSMPKQLW
        FAVYVYISQKIVCAYFLWMSMPK LW
Subjt:  FAVYVYISQKIVCAYFLWMSMPKQLW

A0A660KVF0 Uncharacterized protein1.6e-2453.23Show/hide
Query:  MAALSAGHRHFFPAVQFG--NRSISPRPIVLLCCHNHNQDPSDSSEEKTKKDQEGKQMVPGFIQR----YKKMGMELKEKLSPQRKGDWKDVTLMSLSFA
        MAALS GH      + +    +S SP  ++L CC  H   P DSS  +TKK++  ++++   +QR    ++K G  L+E LSP++KGDWKD+TLMSLSFA
Subjt:  MAALSAGHRHFFPAVQFG--NRSISPRPIVLLCCHNHNQDPSDSSEEKTKKDQEGKQMVPGFIQR----YKKMGMELKEKLSPQRKGDWKDVTLMSLSFA

Query:  VYVYISQKIVCAYFLWMSMPKQLW
        VYVYISQK+VCAYF WMSMPKQLW
Subjt:  VYVYISQKIVCAYFLWMSMPKQLW

A0A6J1DGN1 uncharacterized protein LOC1110203157.5e-3570.16Show/hide
Query:  MAALSAGHRHFF----PAVQFGNRSISPRPIVLLCCHNHNQDPSDSSEEKTKKDQEGKQM-VPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLSFAV
        MAALSAGHRHFF     A Q   R  SP+ IVLLC   H+QDP   SEE +K+ +E KQ  + GF++R++KMGMELKEKLSPQRKGDWKDV LMSLSFAV
Subjt:  MAALSAGHRHFF----PAVQFGNRSISPRPIVLLCCHNHNQDPSDSSEEKTKKDQEGKQM-VPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLSFAV

Query:  YVYISQKIVCAYFLWMSMPK-QLW
        YVYISQKIVCAYF+WMSMPK QLW
Subjt:  YVYISQKIVCAYFLWMSMPK-QLW

A0A6P9E117 uncharacterized protein LOC1183445073.2e-2554.17Show/hide
Query:  MAALSAGHRHF--FPAVQFGNRSISPRPIVLLCCHNHNQDPSDSSEEKTKKDQEGKQMVPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLSFAVYVY
        MAAL  GH  +     +Q   +  SPR  +LL C +H   P+D+S  +TKK+   + ++PG +  + K G  LKE +SPQ+KGDWKDV LMSLSFAVYVY
Subjt:  MAALSAGHRHF--FPAVQFGNRSISPRPIVLLCCHNHNQDPSDSSEEKTKKDQEGKQMVPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLSFAVYVY

Query:  ISQKIVCAYFLWMSMPKQLW
        ISQKIVCAY  WMSMPKQ W
Subjt:  ISQKIVCAYFLWMSMPKQLW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52070.1 unknown protein1.8e-0939.6Show/hide
Query:  CHNHNQDPSDSSE-----------EKTKKDQEGKQMVPGFIQRYKKMGMELKEKLSPQ-RKGDWKDVTLMSLSFAVYVYISQKIVCAYFLW--MSMPKQL
        C NH      SS             K K  +E + ++   ++R      ++ + L P+ +KGD KD+ LMSLSFAVYVYISQ +VCAYF W  +S PK  
Subjt:  CHNHNQDPSDSSE-----------EKTKKDQEGKQMVPGFIQRYKKMGMELKEKLSPQ-RKGDWKDVTLMSLSFAVYVYISQKIVCAYFLW--MSMPKQL

Query:  W
        W
Subjt:  W

AT3G52070.2 unknown protein1.6e-0839.8Show/hide
Query:  CHNHNQDPSDSSE-----------EKTKKDQEGKQMVPGFIQRYKKMGMELKEKLSPQ-RKGDWKDVTLMSLSFAVYVYISQKIVCAYFLW--MSMPK
        C NH      SS             K K  +E + ++   ++R      ++ + L P+ +KGD KD+ LMSLSFAVYVYISQ +VCAYF W  +S PK
Subjt:  CHNHNQDPSDSSE-----------EKTKKDQEGKQMVPGFIQRYKKMGMELKEKLSPQ-RKGDWKDVTLMSLSFAVYVYISQKIVCAYFLW--MSMPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCCCTCTCCGCCGGCCACCGTCATTTCTTCCCCGCCGTGCAGTTCGGAAACAGAAGCATCAGCCCAAGACCAATCGTCCTTCTCTGCTGCCATAACCATAACCA
AGACCCTTCGGATTCTTCTGAAGAAAAAACAAAGAAAGACCAAGAAGGAAAACAGATGGTTCCTGGGTTTATCCAGAGATATAAGAAGATGGGAATGGAATTGAAGGAGA
AATTGAGTCCTCAGAGAAAAGGGGACTGGAAAGATGTGACATTGATGAGCCTTTCATTTGCTGTTTATGTGTATATATCTCAGAAGATTGTTTGTGCTTATTTTCTTTGG
ATGTCAATGCCAAAACAACTGTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCCCTCTCCGCCGGCCACCGTCATTTCTTCCCCGCCGTGCAGTTCGGAAACAGAAGCATCAGCCCAAGACCAATCGTCCTTCTCTGCTGCCATAACCATAACCA
AGACCCTTCGGATTCTTCTGAAGAAAAAACAAAGAAAGACCAAGAAGGAAAACAGATGGTTCCTGGGTTTATCCAGAGATATAAGAAGATGGGAATGGAATTGAAGGAGA
AATTGAGTCCTCAGAGAAAAGGGGACTGGAAAGATGTGACATTGATGAGCCTTTCATTTGCTGTTTATGTGTATATATCTCAGAAGATTGTTTGTGCTTATTTTCTTTGG
ATGTCAATGCCAAAACAACTGTGGTAG
Protein sequenceShow/hide protein sequence
MAALSAGHRHFFPAVQFGNRSISPRPIVLLCCHNHNQDPSDSSEEKTKKDQEGKQMVPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLSFAVYVYISQKIVCAYFLW
MSMPKQLW