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Carg11216 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11216
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-directed RNA polymerases II, IV and V subunit 11-like
Genome locationCarg_Chr14:5392448..5396299
RNA-Seq ExpressionCarg11216
SyntenyCarg11216
Gene Ontology termsGO:0006366 - transcription by RNA polymerase II (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0001055 - RNA polymerase II activity (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR008193 - DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain
IPR036603 - RNA polymerase, RBP11-like subunit
IPR037685 - RNA polymerase RBP11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008461807.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo]1.2e-5594.83Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAGYKLPHPL+YKII+RIHT SQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALEAEFAKFSRDY
        LKNA EAEFAK SRDY
Subjt:  LKNALEAEFAKFSRDY

XP_011651771.1 DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 [Cucumis sativus]2.4e-5695.69Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAGYKLPHPL+YKII+RIHT SQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALEAEFAKFSRDY
        LKNA EAEFAKFSRDY
Subjt:  LKNALEAEFAKFSRDY

XP_022152550.1 DNA-directed RNA polymerases II, IV and V subunit 11 [Momordica charantia]3.1e-5696.55Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHT SQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALEAEFAKFSRDY
        LKNA EAE AKFSRDY
Subjt:  LKNALEAEFAKFSRDY

XP_022935017.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucurbita moschata]2.0e-58100Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALEAEFAKFSRDY
        LKNALEAEFAKFSRDY
Subjt:  LKNALEAEFAKFSRDY

XP_022949378.1 DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita moschata]5.4e-5694.83Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKII+RIHT SQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALEAEFAKFSRDY
        L+N  EAEFAKFSRDY
Subjt:  LKNALEAEFAKFSRDY

TrEMBL top hitse value%identityAlignment
A0A0A0LCD5 RNA_pol_L_2 domain-containing protein1.2e-5695.69Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAGYKLPHPL+YKII+RIHT SQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALEAEFAKFSRDY
        LKNA EAEFAKFSRDY
Subjt:  LKNALEAEFAKFSRDY

A0A6J1DE90 DNA-directed RNA polymerases II, IV and V subunit 111.5e-5696.55Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHT SQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALEAEFAKFSRDY
        LKNA EAE AKFSRDY
Subjt:  LKNALEAEFAKFSRDY

A0A6J1F4E5 DNA-directed RNA polymerases II, IV and V subunit 11-like9.5e-59100Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALEAEFAKFSRDY
        LKNALEAEFAKFSRDY
Subjt:  LKNALEAEFAKFSRDY

A0A6J1GBY1 DNA-directed RNA polymerases II, IV and V subunit 112.6e-5694.83Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASF IEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKII+RIHT SQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALEAEFAKFSRDY
        L+N  EAEFAKFSRDY
Subjt:  LKNALEAEFAKFSRDY

A0A6J1IWY4 DNA-directed RNA polymerases II, IV and V subunit 11-like9.5e-59100Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALEAEFAKFSRDY
        LKNALEAEFAKFSRDY
Subjt:  LKNALEAEFAKFSRDY

SwissProt top hitse value%identityAlignment
P52435 DNA-directed RNA polymerase II subunit RPB11-a8.7e-2551.96Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAP  +E F++ EG KK++  +DTK+ NA  F I +E+HT+GNI++ QL +D  VLFAGYK+PHPL++KIIIR+ T    SP +A+  AI DL  EL  
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LK
        L+
Subjt:  LK

Q32P79 DNA-directed RNA polymerase II subunit RPB118.7e-2551.96Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAP  +E F++ EG KK++  +DTK+ NA  F I +E+HT+GNI++ QL +D  VLFAGYK+PHPL++KIIIR+ T    SP +A+  AI DL  EL  
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LK
        L+
Subjt:  LK

Q38859 DNA-directed RNA polymerases II, IV and V subunit 118.9e-5486.21Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAP+RYERFVVPEGTKKVSY+RDTKIINAASF +ERE+HTIGNI+RMQLHRDENVLFAGY+LPHPLKYKII+RIHT SQSSPMQAYNQAINDLDKELD+
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALEAEFAKFSRDY
        LKN  EAE AKFS  +
Subjt:  LKNALEAEFAKFSRDY

Q86JJ5 DNA-directed RNA polymerase II subunit rpb117.9e-2646.85Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAPDR+E FV+P+G KKV+  RDTKI NA+ F I +E+HTIGN++RMQL  D++++FAGY++PHPL++ + IRI T + ++P++   +++  L +E   
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALEAEFAK
        L+N+   +  K
Subjt:  LKNALEAEFAK

Q9VJE4 DNA-directed RNA polymerase II subunit RPB115.1e-2555.1Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKEL
        MNAP  +E F++ EG KK+  E DTK+ NAA F I +E+HT+GN++R QL +D NVLFAGYK+PHPL++K +IRI T +  SP +A+  AI DL  EL
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKEL

Arabidopsis top hitse value%identityAlignment
AT3G52090.1 DNA-directed RNA polymerase, RBP11-like6.3e-5586.21Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH
        MNAP+RYERFVVPEGTKKVSY+RDTKIINAASF +ERE+HTIGNI+RMQLHRDENVLFAGY+LPHPLKYKII+RIHT SQSSPMQAYNQAINDLDKELD+
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDH

Query:  LKNALEAEFAKFSRDY
        LKN  EAE AKFS  +
Subjt:  LKNALEAEFAKFSRDY

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like3.6e-5068.49Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIR--------------------------
        MNAP+RYERFVVPEGTKKVSY+RDTKIINAASF +ERE+HTIGNI+RMQLHRDENVLFAGY+LPHPLKYKII+R                          
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIR--------------------------

Query:  ----IHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY
            IHT SQSSPMQAYNQAINDLDKELD+LKN  EAE AKFS  +
Subjt:  ----IHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFAKFSRDY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGCCCCCGACCGATATGAGCGCTTCGTCGTTCCAGAGGGGACTAAAAAGGTCTCATACGAAAGAGACACCAAGATTATAAATGCGGCGTCGTTTATCATTGAAAG
GGAGGAACATACAATTGGAAACATCTTGCGAATGCAGCTTCATAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGAAGTATAAAATCATTATCC
GGATCCATACTGCTAGCCAATCGTCGCCGATGCAAGCATATAATCAAGCCATCAACGATTTGGATAAGGAGCTTGATCACTTGAAAAACGCACTTGAGGCTGAGTTCGCA
AAGTTCTCAAGGGACTATTGA
mRNA sequenceShow/hide mRNA sequence
AAGGAAATTAAGACAAAACCCTGAGTTTCTTTCGTCTTCTCCATCTTCCTCTCTCGGGCAGCTTCCATTACTGCAAAAACCACACCTCCAACAGCTTCACAAGGACTCCT
AAAGCCATGAATGCCCCCGACCGATATGAGCGCTTCGTCGTTCCAGAGGGGACTAAAAAGGTCTCATACGAAAGAGACACCAAGATTATAAATGCGGCGTCGTTTATCAT
TGAAAGGGAGGAACATACAATTGGAAACATCTTGCGAATGCAGCTTCATAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGAAGTATAAAATCA
TTATCCGGATCCATACTGCTAGCCAATCGTCGCCGATGCAAGCATATAATCAAGCCATCAACGATTTGGATAAGGAGCTTGATCACTTGAAAAACGCACTTGAGGCTGAG
TTCGCAAAGTTCTCAAGGGACTATTGATTTGGCTTTGAAAAAAAAACTTGGTGGAGCTCAGTTCAAGATGCAGACACAAGACAATTGGTAGCTGACATGAAATGTATTTC
CAACAACTTTGCTTTGTTTTCTTTAAGGTTGCTGAAACCATCTTGTAACTTTGCTAAACTATTTTTGGTATGAGACTATGCATTTAAATTATATATATATATATATATAT
A
Protein sequenceShow/hide protein sequence
MNAPDRYERFVVPEGTKKVSYERDTKIINAASFIIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLKYKIIIRIHTASQSSPMQAYNQAINDLDKELDHLKNALEAEFA
KFSRDY