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Carg11229 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11229
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionsm-like protein LSM7
Genome locationCarg_Chr14:5504024..5508390
RNA-Seq ExpressionCarg11229
SyntenyCarg11229
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0000956 - nuclear-transcribed mRNA catabolic process (biological process)
GO:0005688 - U6 snRNP (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0097526 - spliceosomal tri-snRNP complex (cellular component)
GO:0120115 - Lsm2-8 complex (cellular component)
GO:1990726 - Lsm1-7-Pat1 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR017132 - Sm-like protein Lsm7
IPR044641 - Sm-like protein Lsm7/SmG


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_020260133.1 sm-like protein LSM7 isoform X2 [Asparagus officinalis]6.6e-4796.97Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSP DGTDEIANPF+QPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

XP_022152570.1 sm-like protein LSM7 [Momordica charantia]3.9e-4798.99Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRD DDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

XP_022934168.1 sm-like protein LSM7 [Cucurbita moschata]1.0e-47100Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

XP_022948303.1 sm-like protein LSM7 [Cucurbita moschata]1.3e-4798.99Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

XP_022983896.1 sm-like protein LSM7 [Cucurbita maxima]3.0e-4798.99Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE IEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

TrEMBL top hitse value%identityAlignment
A0A6J1DI46 sm-like protein LSM71.9e-4798.99Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRD DDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

A0A6J1F6X2 sm-like protein LSM75.0e-48100Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

A0A6J1G9G2 sm-like protein LSM76.5e-4898.99Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

A0A6J1J3M9 sm-like protein LSM71.4e-4798.99Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE IEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

A0A6J1KGY2 sm-like protein LSM76.5e-4898.99Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

SwissProt top hitse value%identityAlignment
O74499 U6 snRNA-associated Sm-like protein LSm76.3e-2453.19Show/hide
Query:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD
        RKE++LDL+++ D+ +Q   TGGRQ+TG LKG+DQL+NLVLD+  E LR+ +D  K T   R+LGL+V RGT ++L++P+DG++EI NPF+Q +
Subjt:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD

Q54HF6 Probable U6 snRNA-associated Sm-like protein LSm75.1e-2657.78Show/hide
Query:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPF
        +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+  EF+RD++DPL TTD+ R LGL+VCRG++VM+V P +G + I NP+
Subjt:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPF

Q9CQQ8 U6 snRNA-associated Sm-like protein LSm72.7e-2756.52Show/hide
Query:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQ
        +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RD DD  K T+ TR+LGL+VCRGT+V+L+ P DG + I NPF+Q
Subjt:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQ

Q9SI54 Sm-like protein LSM72.9e-4593.62Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKTTDQTRRLGLIVCRGTAVMLVSP DGT+EIANPF+
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI

Q9UK45 U6 snRNA-associated Sm-like protein LSm77.2e-2857.29Show/hide
Query:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  IE++RD DD  K T+ TR+LGL+VCRGT+V+L+ P DG + I NPFIQ   A
Subjt:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA

Arabidopsis top hitse value%identityAlignment
AT2G03870.1 Small nuclear ribonucleoprotein family protein2.1e-4693.62Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKTTDQTRRLGLIVCRGTAVMLVSP DGT+EIANPF+
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI

AT2G03870.2 Small nuclear ribonucleoprotein family protein2.1e-4693.62Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKTTDQTRRLGLIVCRGTAVMLVSP DGT+EIANPF+
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI

AT2G23930.1 probable small nuclear ribonucleoprotein G9.0e-1038.67Show/hide
Query:  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVD
        DL K++DK +Q+KL   R VTGTL+G+DQ +NLV+D  +E        +   D+T  +G++V RG +++ V  ++
Subjt:  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVD

AT2G23930.2 probable small nuclear ribonucleoprotein G1.1e-0737.14Show/hide
Query:  VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVD
        +DK +Q+KL   R VTGTL+G+DQ +NLV+D  +E        +   D+T  +G++V RG +++ V  ++
Subjt:  VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVD

AT3G11500.1 Small nuclear ribonucleoprotein family protein2.0e-0940Show/hide
Query:  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVD
        DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  +E   + DD    TD    +G++V RG +++ V  ++
Subjt:  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAGGGCGTCCAAGTGAAGCTTACCGGCGGCAGACAAGTTACTGGAACGCTAAAAGGATATGA
TCAATTGCTGAACCTTGTGCTGGATGAAGCTATAGAGTTTTTAAGAGATTCTGATGATCCGTTGAAGACAACAGATCAAACCAGACGTCTTGGCCTAATTGTCTGCAGGG
GGACTGCCGTAATGCTTGTGTCTCCAGTTGATGGTACAGACGAGATTGCTAACCCCTTTATCCAACCGGATGGTGCATAG
mRNA sequenceShow/hide mRNA sequence
CATTCTTTCCGCTCCTCACCACTTCCATTGAAAGTAAGCTCCAATTCATTCCCCTTCTTCACACAAATTTCGGTTTTATTCGTTGTTCTTTTGCTCAGTGTAGCTTCCAG
TTCTTCAATATTGTTTTCCAGATGCATGATGCCGTAACTTCGTCGAGATTATTTGAATCGACCAGCAGATGGAATTTTATTTTTCGCTCGTCGTAATTTGTTTCATTTCT
CGGATATTTCAGGTTTCTGGTGCCTTTAATTTTACTGAGGAGTTGCGAAAACGCTATCGTGATGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACA
AGGGCGTCCAAGTGAAGCTTACCGGCGGCAGACAAGTTACTGGAACGCTAAAAGGATATGATCAATTGCTGAACCTTGTGCTGGATGAAGCTATAGAGTTTTTAAGAGAT
TCTGATGATCCGTTGAAGACAACAGATCAAACCAGACGTCTTGGCCTAATTGTCTGCAGGGGGACTGCCGTAATGCTTGTGTCTCCAGTTGATGGTACAGACGAGATTGC
TAACCCCTTTATCCAACCGGATGGTGCATAGGTGTAATTTTTTGTTTACTTTACTTTCCCTGTTCTCTATCTGAATATCAAGTTCCGCTATTTTCTTTGTGATTCCTCTA
TCTCTCTCTCCCTCTCTCTATTAAAAACAATTGAGTTTGAACCCTTCTATCTAGATACGTGGAGCACTTATCCATGTGAAGTAAAATTTGTGAAATTTTGTTAATTTCAG
TAAACTTACCGCTTTCTCTG
Protein sequenceShow/hide protein sequence
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA