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Carg11336 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11336
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L33-like
Genome locationCarg_Chr16:2281462..2282878
RNA-Seq ExpressionCarg11336
SyntenyCarg11336
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001705 - Ribosomal protein L33
IPR011332 - Zinc-binding ribosomal protein
IPR018264 - Ribosomal protein L33, conserved site
IPR038584 - Ribosomal protein L33 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577004.1 hypothetical protein SDJN03_24578, partial [Cucurbita argyrosperma subsp. sororia]1.7e-7699.37Show/hide
Query:  MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKK
        MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSI YGSVICMAKRYAPNTTKRKRLSRKRGGDPEKK
Subjt:  MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKK

Query:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
        KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
Subjt:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK

KAG7015026.1 rpmG, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-77100Show/hide
Query:  MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKK
        MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKK
Subjt:  MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKK

Query:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
        KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
Subjt:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK

XP_022922689.1 uncharacterized protein LOC111430611 isoform X1 [Cucurbita moschata]7.8e-7496.82Show/hide
Query:  MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKK
        MAATIRR CLDSALSCGERNRFLC+SASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIR+GSVICMA+RYAPN TKRKRLSRKRGGDPEKK
Subjt:  MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKK

Query:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEV
        KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEV
Subjt:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEV

XP_022922690.1 uncharacterized protein LOC111430611 isoform X2 [Cucurbita moschata]2.0e-7496.84Show/hide
Query:  MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKK
        MAATIRR CLDSALSCGERNRFLC+SASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIR+GSVICMA+RYAPN TKRKRLSRKRGGDPEKK
Subjt:  MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKK

Query:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
        KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
Subjt:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK

XP_023552499.1 uncharacterized protein LOC111810144 [Cucurbita pepo subsp. pepo]4.1e-7597.47Show/hide
Query:  MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKK
        MAATIRRLC DSALSCGERNRFLC+SASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIR+GSV CMAKRYAPNTTKRKRLSRKRGGDPEKK
Subjt:  MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKK

Query:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
        KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
Subjt:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK

TrEMBL top hitse value%identityAlignment
A0A5A7UZ21 50S ribosomal protein L33-like2.5e-5778.12Show/hide
Query:  MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALS--LSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPE
        MA TI+R CLD  LSCG+RN+FL NS+SS P +F++F   SF A LS  LS VPNVK  L Q A ERSIRYGSVICMAKRYAP+TTKRKRLSRKRGGDP 
Subjt:  MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALS--LSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPE

Query:  KKKKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
        KKKKTRRKGGRKDFKI+RLSSTA TGFFYAKKKSRKMADKIE+QK+DP+A RHVLFTEVK
Subjt:  KKKKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK

A0A6J1E445 uncharacterized protein LOC111430611 isoform X13.8e-7496.82Show/hide
Query:  MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKK
        MAATIRR CLDSALSCGERNRFLC+SASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIR+GSVICMA+RYAPN TKRKRLSRKRGGDPEKK
Subjt:  MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKK

Query:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEV
        KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEV
Subjt:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEV

A0A6J1E4T6 uncharacterized protein LOC111430611 isoform X29.9e-7596.84Show/hide
Query:  MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKK
        MAATIRR CLDSALSCGERNRFLC+SASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIR+GSVICMA+RYAPN TKRKRLSRKRGGDPEKK
Subjt:  MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKK

Query:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
        KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
Subjt:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK

A0A6J1J250 uncharacterized protein LOC111482725 isoform X24.2e-7394.94Show/hide
Query:  MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKK
        MAATIRRLCL SAL CGERNRFLC+SASSTPPSFVSFKCLSFSAALSL VVPNVKESLSQSARERSIR+GSVICMA+RYAPNTTKRKRLSRKRGGDPEKK
Subjt:  MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKK

Query:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
        +KTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTE K
Subjt:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK

A0A6J1J566 uncharacterized protein LOC111482725 isoform X14.2e-7394.94Show/hide
Query:  MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKK
        MAATIRRLCL SAL CGERNRFLC+SASSTPPSFVSFKCLSFSAALSL VVPNVKESLSQSARERSIR+GSVICMA+RYAPNTTKRKRLSRKRGGDPEKK
Subjt:  MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKK

Query:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
        +KTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTE K
Subjt:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK

SwissProt top hitse value%identityAlignment
B6IN38 50S ribosomal protein L335.0e-0754.35Show/hide
Query:  IIRLSSTAGTGFFYAKKKS-RKMADKIELQKFDPLAKRHVLFTEVK
        +I+L S+A TGFFY KKK+ RK  +K+E +K+DP+A++HV+F E K
Subjt:  IIRLSSTAGTGFFYAKKKS-RKMADKIELQKFDPLAKRHVLFTEVK

Q0AQ67 50S ribosomal protein L338.5e-0757.78Show/hide
Query:  IRLSSTAGTGFFY-AKKKSRKMADKIELQKFDPLAKRHVLFTEVK
        IRL+STAGTG+FY  KK +R M +K+ L+K+DP+A++HV F E K
Subjt:  IRLSSTAGTGFFY-AKKKSRKMADKIELQKFDPLAKRHVLFTEVK

Q2W1A2 50S ribosomal protein L333.8e-0756.52Show/hide
Query:  IIRLSSTAGTGFFY-AKKKSRKMADKIELQKFDPLAKRHVLFTEVK
        +I+L STAGTGFFY AKK  RK  +K+E +K+DP+ ++HV F E K
Subjt:  IIRLSSTAGTGFFY-AKKKSRKMADKIELQKFDPLAKRHVLFTEVK

Q5FFJ4 50S ribosomal protein L332.2e-0750Show/hide
Query:  IIRLSSTAGTGFFYAKKKS-RKMADKIELQKFDPLAKRHVLFTEVK
        +++L+S+AGTG+FY KK++ +K+ +K+  +K+DP+A++HVLFTE K
Subjt:  IIRLSSTAGTGFFYAKKKS-RKMADKIELQKFDPLAKRHVLFTEVK

Q5HBV6 50S ribosomal protein L332.2e-0750Show/hide
Query:  IIRLSSTAGTGFFYAKKKS-RKMADKIELQKFDPLAKRHVLFTEVK
        +++L+S+AGTG+FY KK++ +K+ +K+  +K+DP+A++HVLFTE K
Subjt:  IIRLSSTAGTGFFYAKKKS-RKMADKIELQKFDPLAKRHVLFTEVK

Arabidopsis top hitse value%identityAlignment
AT3G06320.1 Ribosomal protein L33 family protein1.4e-0958.82Show/hide
Query:  RKDFKIIRLSSTAGTGFFYAKKKSRK-MADKIELQKFDPLAKRHVLFTEVK
        +K F  IRL S AGTGFFY K+KS K + +K+E +K+DP   RHVLFTE K
Subjt:  RKDFKIIRLSSTAGTGFFYAKKKSRK-MADKIELQKFDPLAKRHVLFTEVK

AT5G18790.1 Ribosomal protein L33 family protein1.4e-0958.82Show/hide
Query:  RKDFKIIRLSSTAGTGFFYAKKKSRK-MADKIELQKFDPLAKRHVLFTEVK
        +K F  IRL S AGTGFFY K+KS K + +K+E +K+DP   RHVLFTE K
Subjt:  RKDFKIIRLSSTAGTGFFYAKKKSRK-MADKIELQKFDPLAKRHVLFTEVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCAACAATTCGAAGGCTTTGTTTGGACTCAGCGCTTTCTTGTGGAGAAAGGAACCGATTTCTCTGTAATTCTGCGTCTTCAACTCCTCCAAGCTTCGTCTCTTT
CAAGTGTCTCTCCTTCTCTGCTGCTCTCTCGTTGAGCGTCGTTCCCAATGTCAAAGAATCGTTGTCACAGAGCGCTCGGGAGAGATCAATTCGTTATGGATCCGTAATTT
GTATGGCCAAAAGATATGCTCCTAACACTACGAAGAGAAAGAGGTTGAGTAGGAAGAGGGGTGGTGATCCAGAAAAGAAAAAGAAGACAAGGAGGAAAGGGGGAAGGAAA
GATTTCAAAATAATCCGACTCTCCTCAACTGCTGGGACTGGTTTTTTCTATGCCAAGAAAAAAAGCAGGAAGATGGCTGATAAGATTGAGCTCCAGAAATTTGACCCTCT
TGCAAAACGACATGTTCTGTTCACTGAAGTCAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCAACAATTCGAAGGCTTTGTTTGGACTCAGCGCTTTCTTGTGGAGAAAGGAACCGATTTCTCTGTAATTCTGCGTCTTCAACTCCTCCAAGCTTCGTCTCTTT
CAAGTGTCTCTCCTTCTCTGCTGCTCTCTCGTTGAGCGTCGTTCCCAATGTCAAAGAATCGTTGTCACAGAGCGCTCGGGAGAGATCAATTCGTTATGGATCCGTAATTT
GTATGGCCAAAAGATATGCTCCTAACACTACGAAGAGAAAGAGGTTGAGTAGGAAGAGGGGTGGTGATCCAGAAAAGAAAAAGAAGACAAGGAGGAAAGGGGGAAGGAAA
GATTTCAAAATAATCCGACTCTCCTCAACTGCTGGGACTGGTTTTTTCTATGCCAAGAAAAAAAGCAGGAAGATGGCTGATAAGATTGAGCTCCAGAAATTTGACCCTCT
TGCAAAACGACATGTTCTGTTCACTGAAGTCAAGTAA
Protein sequenceShow/hide protein sequence
MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKKKKTRRKGGRK
DFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK